mRNA_L-elsbetiae_contig16175.4244.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16175.4244.1
Unique NamemRNA_L-elsbetiae_contig16175.4244.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16175.4244.1 vs. uniprot
Match: A0A6H5JPN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPN6_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 2.860e-60
Identity = 93/113 (82.30%), Postives = 100/113 (88.50%), Query Frame = 1 
Query:    4 LTGAPNEHGFEYVEHLNDLALDCRESNLRKSTTLNGNNLHMNRLKHAFWVEGVKGAARKAEEIERSQELYWSIVRRLPPLPDFVFAFKRFKRPRDSPRKVETLQSAGCPTNEQ 342
            +TG+P+EHGFEYVEHLN +ALDCRESNL  STTL+GNNLHMNR KHAFWVEGVKGAA KAE + RSQE YW+IVRRLPPLPDFVFAFK  KRPRDS RKVETLQ AGC TNEQ
Sbjct:   50 VTGSPDEHGFEYVEHLNGIALDCRESNLMTSTTLHGNNLHMNRSKHAFWVEGVKGAACKAE-VNRSQESYWNIVRRLPPLPDFVFAFKCAKRPRDSSRKVETLQPAGCATNEQ 161
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BLAST of mRNA_L-elsbetiae_contig16175.4244.1 vs. uniprot
Match: D7FPQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPQ6_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 1.070e-48
Identity = 80/107 (74.77%), Postives = 87/107 (81.31%), Query Frame = 1 
Query:    1 GLTGAPNEHGFEYVEHLNDLALDCRESNLRKSTTLNGNNLHMNRLKHAFWVEGVKGAARKAEEIERSQELYWSIVRRLPPLPDFVFAFKRFKRPRDSPRKVETLQSA 321
            G  G+PNE  F YVEHL+D+ALDCRESNLR STT +GNNLHMNRLK AF  +GV GA RKAEEI+RSQE YW IVR LP LPDFVFAFK  KRPRD PRK+ETLQ A
Sbjct:    9 GYKGSPNEQRFGYVEHLDDIALDCRESNLRTSTTSHGNNLHMNRLKRAFRDKGVAGAGRKAEEIDRSQEPYWKIVRVLPALPDFVFAFKLVKRPRDLPRKLETLQPA 115
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16175.4244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JPN6_9PHAE2.860e-6082.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPQ6_ECTSI1.070e-4874.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16175contigL-elsbetiae_contig16175:1942..2286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size345
Cds size345
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815668.5258732-CDS-L-elsbetiae_contig16175:1941..22861622815668.5258732-CDS-L-elsbetiae_contig16175:1941..2286Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16175 1942..2286 +
1691683026.2870474-CDS-L-elsbetiae_contig16175:1941..22861691683026.2870474-CDS-L-elsbetiae_contig16175:1941..2286Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16175 1942..2286 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16175.4244.1prot_L-elsbetiae_contig16175.4244.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16175 1942..2286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16175.4244.1

>prot_L-elsbetiae_contig16175.4244.1 ID=prot_L-elsbetiae_contig16175.4244.1|Name=mRNA_L-elsbetiae_contig16175.4244.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
GLTGAPNEHGFEYVEHLNDLALDCRESNLRKSTTLNGNNLHMNRLKHAFW
VEGVKGAARKAEEIERSQELYWSIVRRLPPLPDFVFAFKRFKRPRDSPRK
VETLQSAGCPTNEQ*
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mRNA from alignment at L-elsbetiae_contig16175:1942..2286+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16175.4244.1 ID=mRNA_L-elsbetiae_contig16175.4244.1|Name=mRNA_L-elsbetiae_contig16175.4244.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=345bp|location=Sequence derived from alignment at L-elsbetiae_contig16175:1942..2286+ (Laminarionema elsbetiae ELsaHSoW15)
GGTTTGACAGGTGCGCCCAACGAGCACGGGTTTGAGTACGTGGAGCACCT
GAACGACTTGGCCCTGGACTGCCGCGAAAGTAATTTGAGGAAATCCACTA
CACTGAACGGTAACAATCTCCACATGAACAGGTTGAAGCATGCTTTTTGG
GTCGAGGGCGTGAAAGGCGCAGCACGCAAAGCAGAGGAAATCGAGAGATC
GCAGGAGTTATACTGGAGCATCGTACGTCGTCTACCGCCGCTTCCTGATT
TTGTGTTCGCGTTCAAGCGTTTCAAACGGCCGCGAGATTCACCACGAAAA
GTAGAGACGCTGCAATCAGCAGGGTGTCCTACGAACGAGCAGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16175:1942..2286+

>mRNA_L-elsbetiae_contig16175.4244.1 ID=mRNA_L-elsbetiae_contig16175.4244.1|Name=mRNA_L-elsbetiae_contig16175.4244.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig16175:1942..2286+ (Laminarionema elsbetiae ELsaHSoW15)
GGTTTGACAGGTGCGCCCAACGAGCACGGGTTTGAGTACGTGGAGCACCT
GAACGACTTGGCCCTGGACTGCCGCGAAAGTAATTTGAGGAAATCCACTA
CACTGAACGGTAACAATCTCCACATGAACAGGTTGAAGCATGCTTTTTGG
GTCGAGGGCGTGAAAGGCGCAGCACGCAAAGCAGAGGAAATCGAGAGATC
GCAGGAGTTATACTGGAGCATCGTACGTCGTCTACCGCCGCTTCCTGATT
TTGTGTTCGCGTTCAAGCGTTTCAAACGGCCGCGAGATTCACCACGAAAA
GTAGAGACGCTGCAATCAGCAGGGTGTCCTACGAACGAGCAGTGAGGTTT
GACAGGTGCGCCCAACGAGCACGGGTTTGAGTACGTGGAGCACCTGAACG
ACTTGGCCCTGGACTGCCGCGAAAGTAATTTGAGGAAATCCACTACACTG
AACGGTAACAATCTCCACATGAACAGGTTGAAGCATGCTTTTTGGGTCGA
GGGCGTGAAAGGCGCAGCACGCAAAGCAGAGGAAATCGAGAGATCGCAGG
AGTTATACTGGAGCATCGTACGTCGTCTACCGCCGCTTCCTGATTTTGTG
TTCGCGTTCAAGCGTTTCAAACGGCCGCGAGATTCACCACGAAAAGTAGA
GACGCTGCAATCAGCAGGGTGTCCTACGAACGAGCAGTGA
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