mRNA_L-elsbetiae_contig16170.4242.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16170.4242.1
Unique NamemRNA_L-elsbetiae_contig16170.4242.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16170.4242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16170contigL-elsbetiae_contig16170:1435..1743 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size311
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815668.383188-CDS-L-elsbetiae_contig16170:1434..17431622815668.383188-CDS-L-elsbetiae_contig16170:1434..1743Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16170 1435..1743 +
1691683026.184344-CDS-L-elsbetiae_contig16170:1434..17431691683026.184344-CDS-L-elsbetiae_contig16170:1434..1743Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16170 1435..1743 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16170.4242.1prot_L-elsbetiae_contig16170.4242.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16170 1435..1743 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16170.4242.1

>prot_L-elsbetiae_contig16170.4242.1 ID=prot_L-elsbetiae_contig16170.4242.1|Name=mRNA_L-elsbetiae_contig16170.4242.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
LVYLPDRAHRSQTQNPGCCECVIWVALSTSSRLRDTPQDVPQCSTGSSLF
LKMLFAQGFKKHYAHLRSHERVCRTYTQTPAPLGWVVVTDRCLLLVLKTT
IIN
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mRNA from alignment at L-elsbetiae_contig16170:1435..1743+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16170.4242.1 ID=mRNA_L-elsbetiae_contig16170.4242.1|Name=mRNA_L-elsbetiae_contig16170.4242.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=309bp|location=Sequence derived from alignment at L-elsbetiae_contig16170:1435..1743+ (Laminarionema elsbetiae ELsaHSoW15)
TTAGTCTACCTCCCCGATCGCGCTCACCGAAGCCAAACACAAAACCCTGG
GTGTTGTGAGTGTGTCATATGGGTAGCACTGAGTACCTCCAGTCGTCTTC
GGGATACCCCACAGGATGTGCCCCAATGCAGCACAGGGAGTTCGCTGTTC
CTCAAAATGCTCTTCGCCCAAGGATTTAAAAAACACTACGCCCACCTTCG
ATCGCACGAGCGTGTGTGTCGTACCTACACACAAACACCCGCCCCCCTGG
GCTGGGTGGTTGTAACCGATCGCTGCCTTCTTCTCGTGCTGAAAACAACC
ATCATCAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16170:1435..1743+

>mRNA_L-elsbetiae_contig16170.4242.1 ID=mRNA_L-elsbetiae_contig16170.4242.1|Name=mRNA_L-elsbetiae_contig16170.4242.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig16170:1435..1743+ (Laminarionema elsbetiae ELsaHSoW15)
TTAGTCTACCTCCCCGATCGCGCTCACCGAAGCCAAACACAAAACCCTGG
GTGTTGTGAGTGTGTCATATGGGTAGCACTGAGTACCTCCAGTCGTCTTC
GGGATACCCCACAGGATGTGCCCCAATGCAGCACAGGGAGTTCGCTGTTC
CTCAAAATGCTCTTCGCCCAAGGATTTAAAAAACACTACGCCCACCTTCG
ATCGCACGAGCGTGTGTGTCGTACCTACACACAAACACCCGCCCCCCTGG
GCTGGGTGGTTGTAACCGATCGCTGCCTTCTTCTCGTGCTGAAAACAACC
ATCATCAACTTAGTCTACCTCCCCGATCGCGCTCACCGAAGCCAAACACA
AAACCCTGGGTGTTGTGAGTGTGTCATATGGGTAGCACTGAGTACCTCCA
GTCGTCTTCGGGATACCCCACAGGATGTGCCCCAATGCAGCACAGGGAGT
TCGCTGTTCCTCAAAATGCTCTTCGCCCAAGGATTTAAAAAACACTACGC
CCACCTTCGATCGCACGAGCGTGTGTGTCGTACCTACACACAAACACCCG
CCCCCCTGGGCTGGGTGGTTGTAACCGATCGCTGCCTTCTTCTCGTGCTG
AAAACAACCATCATCAAC
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