mRNA_L-elsbetiae_contig16162.4235.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16162.4235.1
Unique NamemRNA_L-elsbetiae_contig16162.4235.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig16162.4235.1 vs. uniprot
Match: D7FXF6_ECTSI (SET domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXF6_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 1.060e-33
Identity = 77/177 (43.50%), Postives = 99/177 (55.93%), Query Frame = 1 
Query:    1 PQSWGRKLIWQFAPDAAAFPPGRRKSWNHALDRLHRS-GVLRPTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQDGGRLGSERRAVLSRVMMICEANIFGEEEDAADGTRALFELACRINHSCLPNCTYRVVDGRVVVRAIADVVPGSELFVSYLSCDEIMRPTKQRRLCLSESK 528
            P S   +++  FAPD    P GR  +    LD+L  + G LRP                              X      +G +RR++L +V+MIC+ANIFGE  +  +G R+LF L CRINHSCLPNC+Y V+DGR+VVRAIADV  G EL VSYL+ D + RPT  RRL L E+K
Sbjct:  329 PPSVQERVLQLFAPDPEGVPQGRLHALEFFLDKLWTAMGALRPPAASSSSCVAAAANGKGAGRLQDAGSRGGDXXXXXX-IGRKRRSLLMKVLMICDANIFGEGANEENGPRSLFWLGCRINHSCLPNCSYHVLDGRMVVRAIADVEQGEELLVSYLAFDHVARPTPDRRLRLLETK 504
[Close]
BLAST of mRNA_L-elsbetiae_contig16162.4235.1 vs. uniprot
Match: UPI00200A2175 (SET domain-containing protein-lysine N-methyltransferase n=1 Tax=Paraburkholderia terrae TaxID=311230 RepID=UPI00200A2175)

HSP 1 Score: 56.6 bits (135), Expect = 5.250e-7
Identity = 38/101 (37.62%), Postives = 54/101 (53.47%), Query Frame = 1 
Query:  232 GRLGSERRAVLSRVMMICEANIFGEEEDAA-DGTRALFELACRINHSCLPNCTYRVVDGRVVVRAIADVVPGSELFVSY-LSCD-EIMRPTKQRRLCLSES 525
            G L S RRA   + + +    +FG  +    DG+R     A  +NH+C PNC       RV + A+AD+VPGSELF+ Y L+ D E     +Q+  CL +S
Sbjct:   35 GELTSWRRAATRQRVDVGHTFVFGLSDGRVIDGSRG-GNSARFLNHACAPNCEAIESGDRVFIHALADIVPGSELFIDYALAIDGEPTDEIRQQYACLCDS 134
[Close]
BLAST of mRNA_L-elsbetiae_contig16162.4235.1 vs. uniprot
Match: S8GHC0_TOXGM (Histone lysine methyltransferase, SET, putative n=15 Tax=Toxoplasma gondii TaxID=5811 RepID=S8GHC0_TOXGM)

HSP 1 Score: 56.2 bits (134), Expect = 4.980e-6
Identity = 34/90 (37.78%), Postives = 50/90 (55.56%), Query Frame = 1 
Query:  262 LSRVMMICEANIFGEEEDAADGTRALFELACRINHSCLPNCTYRV-VDGRVVVRAIADVVPGSELFVSYLSCDEIMRPTKQRRLCLSESK 528
            L  ++ I   N F + ED       ++ +    +HSCLPN  +    D   V+R  AD+  G E+ ++YLS D++MRPT QRR  LSE+K
Sbjct:  145 LELLLQIWIHNCFEQFEDPVG--YVIYFMPSFSSHSCLPNALWFTDEDHTFVLRTRADIAAGDEVTLTYLSEDDLMRPTLQRRKVLSETK 232
[Close]
BLAST of mRNA_L-elsbetiae_contig16162.4235.1 vs. uniprot
Match: A0A813ESR8_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813ESR8_POLGL)

HSP 1 Score: 55.1 bits (131), Expect = 1.120e-5
Identity = 33/102 (32.35%), Postives = 51/102 (50.00%), Query Frame = 1 
Query:  235 RLGSERRAVLSRVMMICEANIFGEEEDAADGT---------RALFELACRINHSCLPNCTY--RVVDGRVVVRAIADVVPGSELFVSYLSCDEIMRPTKQRR 507
            +L S  R  L +   I   N F      ADG+          A++ +AC+ NHSCLPN ++  R +DG  V+R+   +  G E+ +SYL   ++  PT  R+
Sbjct:   48 KLSSSDRQRLVQFKTIMNFNSFETRPALADGSGLDDDLDDRAAIYMVACKANHSCLPNASWYTRDLDGTRVMRSTHSLKKGEEVLISYLQDSDLRLPTAYRQ 149
[Close]
BLAST of mRNA_L-elsbetiae_contig16162.4235.1 vs. uniprot
Match: A0A812SAB8_9DINO (Yif1a protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812SAB8_9DINO)

HSP 1 Score: 55.1 bits (131), Expect = 1.170e-5
Identity = 26/65 (40.00%), Postives = 40/65 (61.54%), Query Frame = 1 
Query:  316 AADGTRALFELACRINHSCLPNCTY-RVVDGRVVVRAIADVVPGSELFVSYLSCDEIMRPTKQRR 507
            A DG+ ++  +  R NH+C PN T      G + + A+ D+ PG E+ VSYLS ++++RPT  RR
Sbjct:  324 AIDGSTSVCRIVSRANHACQPNATLCPETGGAIRLVALCDLAPGEEILVSYLSGEDLLRPTWARR 388
[Close]
BLAST of mRNA_L-elsbetiae_contig16162.4235.1 vs. uniprot
Match: UPI00097C5E3C (SET domain-containing protein-lysine N-methyltransferase n=1 Tax=Pelomonas sp. KK5 TaxID=1855730 RepID=UPI00097C5E3C)

HSP 1 Score: 52.8 bits (125), Expect = 1.590e-5
Identity = 25/46 (54.35%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:  358 INHSCLPNCTYRVVDGRVVVRAIADVVPGSELFVSY-LSCDEIMRP 492
            INHSC PNC    V+GRV ++A+AD+ PG ELF  Y L+ DE   P
Sbjct:   84 INHSCAPNCEADEVEGRVYIKALADLSPGEELFYDYGLTIDERYTP 129
[Close]
BLAST of mRNA_L-elsbetiae_contig16162.4235.1 vs. uniprot
Match: M4C156_HYAAE (SET domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C156_HYAAE)

HSP 1 Score: 54.3 bits (129), Expect = 2.050e-5
Identity = 30/88 (34.09%), Postives = 46/88 (52.27%), Query Frame = 1 
Query:  262 LSRVMMICEANIFGEEEDAADGTRALFELACRINHSCLPNCTYRVVDGRVVVRAIADVVPGSELFVSYLSCDEIMRPTKQRRLCLSES 525
            ++R++ +   N    E     G   LF  ACRI HSC+PNC++   D  + + AI  +VPG  L + Y +     RPT +R+  L +S
Sbjct:  175 MARLIGVLNTNAHELETLGGSG---LFLSACRIEHSCMPNCSFTTFDSTLWMTAIRSIVPGDALSIDYGNF--FYRPTPERQESLLDS 257
[Close]
BLAST of mRNA_L-elsbetiae_contig16162.4235.1 vs. uniprot
Match: G4YKV5_PHYSP (SET domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=G4YKV5_PHYSP)

HSP 1 Score: 53.1 bits (126), Expect = 5.100e-5
Identity = 27/67 (40.30%), Postives = 37/67 (55.22%), Query Frame = 1 
Query:  325 GTRALFELACRINHSCLPNCTYRVVDGRVVVRAIADVVPGSELFVSYLSCDEIMRPTKQRRLCLSES 525
            G   LF  ACR+ HSCLPNC++   D  + + AI  + PG  L + Y +     RPT +R+  L ES
Sbjct:  193 GGSGLFLSACRMEHSCLPNCSFTTFDSTLWMTAIRPIAPGDALSIDYGNF--FYRPTPERQESLLES 257
[Close]
BLAST of mRNA_L-elsbetiae_contig16162.4235.1 vs. uniprot
Match: F0VBM4_NEOCL (SET domain-containing protein n=2 Tax=Neospora caninum (strain Liverpool) TaxID=572307 RepID=F0VBM4_NEOCL)

HSP 1 Score: 52.8 bits (125), Expect = 7.760e-5
Identity = 32/90 (35.56%), Postives = 49/90 (54.44%), Query Frame = 1 
Query:  262 LSRVMMICEANIFGEEEDAADGTRALFELACRINHSCLPNCTYRV-VDGRVVVRAIADVVPGSELFVSYLSCDEIMRPTKQRRLCLSESK 528
            L  ++ I   N F + ED       ++ +    +HSCLPN  +    D   V+R  AD+  G E+ ++YLS +++MRPT  RR  LSE+K
Sbjct:  145 LELLLQIWIHNCFEQFEDPVG--YVIYFMPSFSSHSCLPNALWFTDEDHTFVLRTRADIAAGDEVTLTYLSEEDLMRPTLHRRRVLSETK 232
[Close]
BLAST of mRNA_L-elsbetiae_contig16162.4235.1 vs. uniprot
Match: A0A244DYF1_9BURK (SET domain-containing protein-lysine N-methyltransferase n=2 Tax=Paraburkholderia TaxID=1822464 RepID=A0A244DYF1_9BURK)

HSP 1 Score: 50.4 bits (119), Expect = 9.150e-5
Identity = 30/79 (37.97%), Postives = 40/79 (50.63%), Query Frame = 1 
Query:  232 GRLGSERRAVLSRVMMICEANIFGEEEDAA-DGTRALFELACRINHSCLPNCTYRVVDGRVVVRAIADVVPGSELFVSY 465
            G L S RRA   +        +FG  +    DG+R     A  +NH+C PNC       RV + A+AD+ PGSELF+ Y
Sbjct:   29 GELTSWRRAAARQRADAGHTFVFGLSDGRVIDGSRG-GNSARFLNHACAPNCEAIESGDRVFIHALADIAPGSELFIDY 106
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16162.4235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FXF6_ECTSI1.060e-3343.50SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
UPI00200A21755.250e-737.62SET domain-containing protein-lysine N-methyltrans... [more]
S8GHC0_TOXGM4.980e-637.78Histone lysine methyltransferase, SET, putative n=... [more]
A0A813ESR8_POLGL1.120e-532.35Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
A0A812SAB8_9DINO1.170e-540.00Yif1a protein n=1 Tax=Symbiodinium natans TaxID=87... [more]
UPI00097C5E3C1.590e-554.35SET domain-containing protein-lysine N-methyltrans... [more]
M4C156_HYAAE2.050e-534.09SET domain-containing protein n=1 Tax=Hyaloperonos... [more]
G4YKV5_PHYSP5.100e-540.30SET domain-containing protein n=5 Tax=Phytophthora... [more]
F0VBM4_NEOCL7.760e-535.56SET domain-containing protein n=2 Tax=Neospora can... [more]
A0A244DYF1_9BURK9.150e-537.97SET domain-containing protein-lysine N-methyltrans... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16162contigL-elsbetiae_contig16162:933..3037 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size531
Cds size531
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16162.4235.1prot_L-elsbetiae_contig16162.4235.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16162 933..3037 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815667.8703184-CDS-L-elsbetiae_contig16162:932..11041622815667.8703184-CDS-L-elsbetiae_contig16162:932..1104Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16162 933..1104 +
1691683025.8408594-CDS-L-elsbetiae_contig16162:932..11041691683025.8408594-CDS-L-elsbetiae_contig16162:932..1104Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16162 933..1104 +
1622815667.8833005-CDS-L-elsbetiae_contig16162:1233..13801622815667.8833005-CDS-L-elsbetiae_contig16162:1233..1380Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16162 1234..1380 +
1691683025.8551598-CDS-L-elsbetiae_contig16162:1233..13801691683025.8551598-CDS-L-elsbetiae_contig16162:1233..1380Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16162 1234..1380 +
1622815667.895772-CDS-L-elsbetiae_contig16162:2052..21191622815667.895772-CDS-L-elsbetiae_contig16162:2052..2119Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16162 2053..2119 +
1691683025.8708334-CDS-L-elsbetiae_contig16162:2052..21191691683025.8708334-CDS-L-elsbetiae_contig16162:2052..2119Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16162 2053..2119 +
1622815667.9075081-CDS-L-elsbetiae_contig16162:2892..30371622815667.9075081-CDS-L-elsbetiae_contig16162:2892..3037Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16162 2893..3037 +
1691683025.8813646-CDS-L-elsbetiae_contig16162:2892..30371691683025.8813646-CDS-L-elsbetiae_contig16162:2892..3037Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16162 2893..3037 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16162.4235.1

>prot_L-elsbetiae_contig16162.4235.1 ID=prot_L-elsbetiae_contig16162.4235.1|Name=mRNA_L-elsbetiae_contig16162.4235.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=177bp
PQSWGRKLIWQFAPDAAAFPPGRRKSWNHALDRLHRSGVLRPTTTTAAAT
ATATASAASGTRGAEGGGRGQGQEQDGGRLGSERRAVLSRVMMICEANIF
GEEEDAADGTRALFELACRINHSCLPNCTYRVVDGRVVVRAIADVVPGSE
LFVSYLSCDEIMRPTKQRRLCLSESK*
back to top

mRNA from alignment at L-elsbetiae_contig16162:933..3037+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16162.4235.1 ID=mRNA_L-elsbetiae_contig16162.4235.1|Name=mRNA_L-elsbetiae_contig16162.4235.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2105bp|location=Sequence derived from alignment at L-elsbetiae_contig16162:933..3037+ (Laminarionema elsbetiae ELsaHSoW15)
CCTCAATCTTGGGGACGAAAACTTATTTGGCAGTTCGCGCCAGACGCGGC
CGCCTTCCCCCCGGGGCGCCGCAAATCCTGGAACCACGCCCTGGACCGCC
TGCACCGATCCGGCGTGCTCCGTCCCACCACCACGACGGCTGCCGCTACG
GCTACCGCTACGGCTTCTGCTGGTATTGCTGGTGGCCGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCACGGGGGCGGCGAACAGAGACGTGG
AACGGCTCCAGGGCAGCGGGGCCGCCGACGACAGAGGGCGAGGCCAGGAA
GCCTCGGGTACTCGGGGCGCGGAAGGGGGTGGGCGAGGACAAGGGCAAGA
ACAAGACGGTGGCCGCTTGGGCTCGGAGCGACGGGCGGTGCTGTCGAGGG
TGATGATGATCTGCGAGGCCAACATTTTCGGGGAGGAAGAGGATGCAGGT
GATGATCTTTGTTACGTATGTGCGGACATGGGGCTGCATAAATACGCGCG
CGCGCACACACGGGGCACCCGCGCGGACGGCGACGATGCTCGCGCGGGAG
AGCTCGCGGTTTGAACTTGGAGGAACGTTTGCGCTCCGGCGAAGTGTACG
CGTCAGTGAATACCGCGGCACCCCGTTTAGGACGAATGCGTGCATGGCAT
CGGTTCTAGTTTTTTAAGTTGCAACGTGGAGGCGGGTGGGGATCAATACA
ATGTAGTTGCGTTTTTTTTCGTTTTTAACATATTGTCCCATTCGCGTTGC
CTCTTTCCTCCCTACGGCGTCGTCCTCCTTCCGAGAGGGGACGTTCCCCA
GTTCGGCTTTGATCATCATACCTTTTCTCTCTTTTCGTTCTTCCCTCCCT
CCAGTGTCTACCTTGTGCCCGGTACTGGACACACAGATACACGGACGCTG
AAGTCCTTTCATAGGCCAGGCTGCCAGTCACGGCCTATCCCTAACATCAA
GGCACACGCATCAGCACGTCGGCTTGGCATACACCACGAATAGAACGAAA
CAGCTCTCTCTGTATGCGATCCGCGGGACCCCGCCCCCCCGTGTGTGTGT
GTGAGTGTATTTACGCGCGCGCACTAAATTCGATCGACCCAAAAAACTTG
CCCGGCGCCGCGGCGGGCAGCGGATGGAACGCGGGCACTGTTCGAGCTGG
CGTGTCGGATCAACCACAGCTGTCTCCCAAACTGCACGTGAGTTCGAGCC
GGCGAGGAGCCATACATACGTGCATGTCGACAAAATGTTTTCTGCGGGGT
GTGGTCGAAGATTGCATGTGTTCAGATCAGGGCACGCTAAATACACCCGC
AGTACCGTCCGACCAGTTTACAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CATTTGCTTGCTTGCTGAGCAACTAGCTGCCCGTGTGTGTAGCGAACACC
AGGAGTGCTCAAGCGGTAGCACACCGCAAGGTTGCAGGTACATGGTGTTA
TGTCGGCGTATGCTGAAAGGAGGCAGGCAGGCAGGCAGGGAGGGAGGGAG
GGAGGGAGGAAGGATGATGGCCAGTCTCAGAGGACGGGGTGCCCAGCACT
TGAATATCAGCCTCTCCCCCCCTCTCCCTTCTCCCGCCCCGCGACAAAAT
CGATAAGACACGGAGTACAAGCAAAGATGGGGGACGAGTCAAGCAAGAAA
CTCAAAAAGAAGATCATTCTGACGAAAAAAACATGGTTATTTCAAGAGCG
CCTCAAGTTGGCCGTATGTACCCCTCTTGAACGGCGCTCCGTCAATGTTT
TGAAAGGGACGCATGGCCAGTGATCAATCGATCAATCGACCATAATGCAA
GCTAGATGGATACCCCTAGCCCCCCCCCCCCGCCCAACCGAGCACCTGAG
TAGACCTCCGCTCTCACCCCTTGTGTACCTTTTTCCGCCCTCACCCCTTG
TACCTTTTCCTGCCCTCGTCGGGTTGTGAATACGGACCCGCCCGGCCGCT
GTTTTTGTAGTTATCGCGTGGTCGACGGGCGTGTAGTGGTTCGAGCCATC
GCCGACGTGGTGCCCGGGAGCGAGCTGTTCGTTTCGTACTTGTCTTGCGA
CGAGATCATGAGGCCTACCAAGCAGCGACGCCTTTGTCTCTCGGAGAGCA
AGTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig16162:933..3037+

>mRNA_L-elsbetiae_contig16162.4235.1 ID=mRNA_L-elsbetiae_contig16162.4235.1|Name=mRNA_L-elsbetiae_contig16162.4235.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1062bp|location=Sequence derived from alignment at L-elsbetiae_contig16162:933..3037+ (Laminarionema elsbetiae ELsaHSoW15)
CCTCAATCTTGGGGACGAAAACTTATTTGGCAGTTCGCGCCAGACGCGGC
CGCCTTCCCCCCGGGGCGCCGCAAATCCTGGAACCACGCCCTGGACCGCC
TGCACCGATCCGGCGTGCTCCGTCCCACCACCACGACGGCTGCCGCTACG
GCTACCGCTACGGCTTCTGCTGCCTCAATCTTGGGGACGAAAACTTATTT
GGCAGTTCGCGCCAGACGCGGCCGCCTTCCCCCCGGGGCGCCGCAAATCC
TGGAACCACGCCCTGGACCGCCTGCACCGATCCGGCGTGCTCCGTCCCAC
CACCACGACGGCTGCCGCTACGGCTACCGCTACGGCTTCTGCTGCCTCGG
GTACTCGGGGCGCGGAAGGGGGTGGGCGAGGACAAGGGCAAGAACAAGAC
GGTGGCCGCTTGGGCTCGGAGCGACGGGCGGTGCTGTCGAGGGTGATGAT
GATCTGCGAGGCCAACATTTTCGGGGAGGAAGAGGATGCAGCCTCGGGTA
CTCGGGGCGCGGAAGGGGGTGGGCGAGGACAAGGGCAAGAACAAGACGGT
GGCCGCTTGGGCTCGGAGCGACGGGCGGTGCTGTCGAGGGTGATGATGAT
CTGCGAGGCCAACATTTTCGGGGAGGAAGAGGATGCAGCGGATGGAACGC
GGGCACTGTTCGAGCTGGCGTGTCGGATCAACCACAGCTGTCTCCCAAAC
TGCACCGGATGGAACGCGGGCACTGTTCGAGCTGGCGTGTCGGATCAACC
ACAGCTGTCTCCCAAACTGCACTTATCGCGTGGTCGACGGGCGTGTAGTG
GTTCGAGCCATCGCCGACGTGGTGCCCGGGAGCGAGCTGTTCGTTTCGTA
CTTGTCTTGCGACGAGATCATGAGGCCTACCAAGCAGCGACGCCTTTGTC
TCTCGGAGAGCAAGTGATTATCGCGTGGTCGACGGGCGTGTAGTGGTTCG
AGCCATCGCCGACGTGGTGCCCGGGAGCGAGCTGTTCGTTTCGTACTTGT
CTTGCGACGAGATCATGAGGCCTACCAAGCAGCGACGCCTTTGTCTCTCG
GAGAGCAAGTGA
back to top