mRNA_L-elsbetiae_contig16158.4232.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16158.4232.1
Unique NamemRNA_L-elsbetiae_contig16158.4232.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig16158.4232.1 vs. uniprot
Match: A0A6H5J7P3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P3_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.550e-23
Identity = 49/76 (64.47%), Postives = 56/76 (73.68%), Query Frame = 1 
Query:    1 VLERQKKREGYGDNVNSVFARTVRGHLQYLPGQAIGARGVGNQCKRGACFKELIDMCAGDGDEGIPRDVVLALLRH 228
            VL+RQK+R+  GDNV+ V ARTVR  LQYL  Q IGA G GNQC+RG CF   + M  G G EGIPRDVVLALLR+
Sbjct:  148 VLDRQKERDSQGDNVSYVLARTVRRILQYLAAQEIGASGQGNQCRRGDCFARAMGMFFGKGMEGIPRDVVLALLRY 223
[Close]
BLAST of mRNA_L-elsbetiae_contig16158.4232.1 vs. uniprot
Match: A0A6H5KKJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ8_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 4.080e-7
Identity = 24/66 (36.36%), Postives = 38/66 (57.58%), Query Frame = 1 
Query:   31 YGDNVNSVFARTVRGHLQYLPGQAIGARGVGNQCKRGACFKELIDMCAGDGDEGIPRDVVLALLRH 228
            Y D+     A+ VR  + Y   + +G  G GNQ K G C +    + AGDG++G+P +VV A+L++
Sbjct:   24 YKDDPGYCVAKRVRNQVYYDTAKDLGCFGRGNQLKAGECMRAATKVFAGDGNDGLPTEVVKAMLQY 89
[Close]
BLAST of mRNA_L-elsbetiae_contig16158.4232.1 vs. uniprot
Match: A0A6H5KG83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG83_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 7.880e-6
Identity = 25/66 (37.88%), Postives = 36/66 (54.55%), Query Frame = 1 
Query:   31 YGDNVNSVFARTVRGHLQYLPGQAIGARGVGNQCKRGACFKELIDMCAGDGDEGIPRDVVLALLRH 228
            Y D+     A+ VR    Y   + +G  G GNQ K G C      + AGDG++G+P +VV A+L+H
Sbjct:  115 YKDDPGYCVAKRVRNQGYYDTAKDLGCFGRGNQLKAGECMCAATKVFAGDGNDGLPTEVVKAMLQH 180
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16158.4232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5J7P3_9PHAE1.550e-2364.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKJ8_9PHAE4.080e-736.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KG83_9PHAE7.880e-637.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16158contigL-elsbetiae_contig16158:2157..2387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-08_006220.1
Exons1
Model size233
Cds size231
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815667.6895363-CDS-L-elsbetiae_contig16158:2156..23871622815667.6895363-CDS-L-elsbetiae_contig16158:2156..2387Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16158 2157..2387 +
1691683025.7246606-CDS-L-elsbetiae_contig16158:2156..23871691683025.7246606-CDS-L-elsbetiae_contig16158:2156..2387Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16158 2157..2387 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16158.4232.1prot_L-elsbetiae_contig16158.4232.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16158 2157..2387 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16158.4232.1

>prot_L-elsbetiae_contig16158.4232.1 ID=prot_L-elsbetiae_contig16158.4232.1|Name=mRNA_L-elsbetiae_contig16158.4232.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=77bp
VLERQKKREGYGDNVNSVFARTVRGHLQYLPGQAIGARGVGNQCKRGACF
KELIDMCAGDGDEGIPRDVVLALLRH*
back to top

mRNA from alignment at L-elsbetiae_contig16158:2157..2387+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16158.4232.1 ID=mRNA_L-elsbetiae_contig16158.4232.1|Name=mRNA_L-elsbetiae_contig16158.4232.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=231bp|location=Sequence derived from alignment at L-elsbetiae_contig16158:2157..2387+ (Laminarionema elsbetiae ELsaHSoW15)
GTGCTCGAACGCCAGAAGAAACGAGAGGGCTATGGCGACAACGTTAACAG
TGTGTTTGCACGGACCGTACGGGGCCATCTACAGTATCTCCCGGGGCAAG
CAATTGGGGCGAGGGGTGTTGGGAACCAATGCAAGCGGGGGGCGTGTTTC
AAAGAGTTGATCGACATGTGCGCAGGCGACGGTGATGAGGGTATTCCCCG
CGACGTCGTTTTGGCTCTGCTGAGGCACTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig16158:2157..2387+

>mRNA_L-elsbetiae_contig16158.4232.1 ID=mRNA_L-elsbetiae_contig16158.4232.1|Name=mRNA_L-elsbetiae_contig16158.4232.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=462bp|location=Sequence derived from alignment at L-elsbetiae_contig16158:2157..2387+ (Laminarionema elsbetiae ELsaHSoW15)
GTGCTCGAACGCCAGAAGAAACGAGAGGGCTATGGCGACAACGTTAACAG
TGTGTTTGCACGGACCGTACGGGGCCATCTACAGTATCTCCCGGGGCAAG
CAATTGGGGCGAGGGGTGTTGGGAACCAATGCAAGCGGGGGGCGTGTTTC
AAAGAGTTGATCGACATGTGCGCAGGCGACGGTGATGAGGGTATTCCCCG
CGACGTCGTTTTGGCTCTGCTGAGGCACTGAGTGCTCGAACGCCAGAAGA
AACGAGAGGGCTATGGCGACAACGTTAACAGTGTGTTTGCACGGACCGTA
CGGGGCCATCTACAGTATCTCCCGGGGCAAGCAATTGGGGCGAGGGGTGT
TGGGAACCAATGCAAGCGGGGGGCGTGTTTCAAAGAGTTGATCGACATGT
GCGCAGGCGACGGTGATGAGGGTATTCCCCGCGACGTCGTTTTGGCTCTG
CTGAGGCACTGA
back to top