mRNA_L-elsbetiae_contig1615.4229.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1615.4229.1
Unique NamemRNA_L-elsbetiae_contig1615.4229.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1615.4229.1 vs. uniprot
Match: A0A6H5KTN4_9PHAE (Elongation of fatty acids protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTN4_9PHAE)

HSP 1 Score: 429 bits (1103), Expect = 4.290e-148
Identity = 196/255 (76.86%), Postives = 217/255 (85.10%), Query Frame = 1 
Query:  241 MMETDWERWGAIAPPTSW-VNDWNEPYSEIYDWYPWMRKFYSRLEIEKDCISGWLWMRKTSPWLPILICAVYLLFCYVGPKVMAKRKAFDLRGPLVAWNFALSAFSLVGVIRTVPHLFHILSIYGFKYTICAKPTMWYGSGAVGCWTQLFVLSKIPELGDTIFVVLRKKPLIFLHWYHHVTVLLYCWHSYYEQTTYGLYFITMNFTVHAVMYLYYALAGMKIRLCKPQYITTLQISQMVVGVAVCVAGGYYISKG 1002
            MME DW RW AI  P     N WNEPY+E+YDW+PW+R+FY++ EI  DC   W W R  SPWLPIL+C  YL FCYVGPKVMA RK FDLR PL+AWNF LSAFS VG++RTVPHL  IL +YGFKYTICAKPTMWYGSGAVG WTQ FV SKIPELGDTIFVVLRKKPLIFLHWYHHVTVLLYCWHSY+EQTTYGLYFI+MN+TVHA+MYLYY LAGM+IRLCKP YITT+QISQMVVG+AVCVAGGYY++ G
Sbjct:    1 MMEADWARWDAIELPHGGKFNYWNEPYAEVYDWHPWLRRFYTQREINYDCKEAWHWTRDNSPWLPILVCMGYLAFCYVGPKVMANRKPFDLRRPLIAWNFMLSAFSFVGMMRTVPHLIQILYVYGFKYTICAKPTMWYGSGAVGMWTQAFVFSKIPELGDTIFVVLRKKPLIFLHWYHHVTVLLYCWHSYFEQTTYGLYFISMNYTVHALMYLYYGLAGMRIRLCKPYYITTMQISQMVVGIAVCVAGGYYMAMG 255
[Close]
BLAST of mRNA_L-elsbetiae_contig1615.4229.1 vs. uniprot
Match: D8LFZ1_ECTSI (Elongation of fatty acids protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFZ1_ECTSI)

HSP 1 Score: 336 bits (861), Expect = 2.060e-112
Identity = 156/184 (84.78%), Postives = 169/184 (91.85%), Query Frame = 1 
Query:  451 YLLFCYVGPKVMAKRKAFDLRGPLVAWNFALSAFSLVGVIRTVPHLFHILSIYGFKYTICAKPTMWYGSGAVGCWTQLFVLSKIPELGDTIFVVLRKKPLIFLHWYHHVTVLLYCWHSYYEQTTYGLYFITMNFTVHAVMYLYYALAGMKIRLCKPQYITTLQISQMVVGVAVCVAGGYYISKG 1002
            YL FCYVGPKVMA RK FDLR PL+AWNF LSAFS VG++RTVPHL  IL +YGFKYTICAKPTMWYGSGAVG WTQ FV SKIPELGDTIFVVLRKKPLIFLHWYHHVTVLLYCWHSY+EQTTYGLYFI+MN+TVHA+MYLYY LAGM+IRLCKP YITT+QISQMVVG+AVCVAGGYY++ G
Sbjct:    3 YLAFCYVGPKVMANRKPFDLRRPLIAWNFLLSAFSFVGMMRTVPHLVQILYVYGFKYTICAKPTMWYGSGAVGMWTQAFVFSKIPELGDTIFVVLRKKPLIFLHWYHHVTVLLYCWHSYFEQTTYGLYFISMNYTVHALMYLYYGLAGMRIRLCKPYYITTMQISQMVVGIAVCVAGGYYMAMG 186
[Close]
BLAST of mRNA_L-elsbetiae_contig1615.4229.1 vs. uniprot
Match: A0A836CLW9_9STRA (Elongation of fatty acids protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLW9_9STRA)

HSP 1 Score: 285 bits (728), Expect = 3.900e-92
Identity = 131/201 (65.17%), Postives = 160/201 (79.60%), Query Frame = 1 
Query:  400 LWMRKTSPWLPILICAVYLLFCYVGPKVMAKRKAFDLRGPLVAWNFALSAFSLVGVIRTVPHLFHILSIYGFKYTICAKPTMWYGSGAVGCWTQLFVLSKIPELGDTIFVVLRKKPLIFLHWYHHVTVLLYCWHSYYEQTTYGLYFITMNFTVHAVMYLYYALAGMKIRLCKPQYITTLQISQMVVGVAVCVAGGYYISKG 1002
            +++R+ SPW PI ICAVYLLFCY+G   M  RKA+ L   L+ WNFAL+ FSL+G +RTVPHL +++++ G+KYTI  +   W G GAVG W Q+FV SKIPELGDT+F+VLRK+PLIFLHWYHHVTVLLYCWHSYY +  YGLYF  MN++VHAVMYLYYALA ++IRLCKP Y+TTLQISQM VG+AVC +   Y  KG
Sbjct:    2 VFLREWSPWGPIGICAVYLLFCYLGTLYMKNRKAYGLNRALMLWNFALAMFSLMGALRTVPHLANVIALKGYKYTITEQGRDWVGGGAVGFWAQMFVFSKIPELGDTVFIVLRKRPLIFLHWYHHVTVLLYCWHSYYNEAAYGLYFAAMNYSVHAVMYLYYALAALRIRLCKPYYVTTLQISQMFVGIAVCCSCWIYYKKG 202
[Close]
BLAST of mRNA_L-elsbetiae_contig1615.4229.1 vs. uniprot
Match: A0A835ZI52_9STRA (Elongation of fatty acids protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI52_9STRA)

HSP 1 Score: 271 bits (694), Expect = 3.190e-86
Identity = 126/195 (64.62%), Postives = 149/195 (76.41%), Query Frame = 1 
Query:  406 MRKTSPWLPILICAVYLLFCYVGPKVMAKRKAFDLRGPLVAWNFALSAFSLVGVIRTVPHLFHILSIYGFKYTICAKPTMWYGSGAVGCWTQLFVLSKIPELGDTIFVVLRKKPLIFLHWYHHVTVLLYCWHSYYEQTTYGLYFITMNFTVHAVMYLYYALAGMKIRLCKPQYITTLQISQMVVGVAVCVAGGYY 990
            +RK SP  P+ +C +YL+  Y+G + M  RKAFDLRGPLV WN AL+ FSL G +RTVPH+F++L   G+ YTI A    W G GAVG W   FV SK PELGDT+F++LRKKPLIFLHWYHHVTVLLYCWHSYY Q  YGLYF  MN++VHAVMYLYYALA +KIRLCKP YIT +QISQM +G+ VC +  YY
Sbjct:    4 LRKVSPTYPVTVCIIYLIGVYLGRRAMRNRKAFDLRGPLVVWNLALAVFSLWGALRTVPHVFYVLYKEGYTYTIIADGRDWCGGGAVGVWALWFVYSKTPELGDTVFIILRKKPLIFLHWYHHVTVLLYCWHSYYYQEAYGLYFAAMNYSVHAVMYLYYALAAVKIRLCKPYYITAMQISQMFMGIFVCGSAWYY 198
[Close]
BLAST of mRNA_L-elsbetiae_contig1615.4229.1 vs. uniprot
Match: A0A7S4C8Y4_9EUGL (Elongation of fatty acids protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4C8Y4_9EUGL)

HSP 1 Score: 223 bits (568), Expect = 1.220e-67
Identity = 108/222 (48.65%), Postives = 152/222 (68.47%), Query Frame = 1 
Query:  316 YSEIYDWYPWMRKFYSRLEIE--KDCISGWLWMRKTSPWLPILICAVYLLFCYVGPKVMAKRKAFDLRGPLVAWNFALSAFSLVGVIRTVPHLFHILSIYGFKYTICAKPTMWYGSGAVGCWTQLFVLSKIPELGDTIFVVLRKKPLIFLHWYHHVTVLLYCWHSYYEQTTYGLYFITMNFTVHAVMYLYYAL--AGMKIRLCKPQYITTLQISQMVVGVAV 969
            + +++   P +  FY + E E   D +  W+  R   P LPI++C +Y++  + G K+M  +K F LR  L+ WN +LS FS++G IRTVPHL ++LS   F  T+C  P   +G GA G W Q+F+LSK PELGDT+F+VL+KKPL+FLHWYHHVTVLL+CWHSY  ++  GLYF++MN++VH +MY YYAL  A + ++    + +T LQI+QMVVGV V
Sbjct:   26 FEQLFQKVPALSSFYFKGEAEYQPDPVQAWMAAR---PLLPIIVCTLYVVLVFAGRKIMENKKPFGLRPLLILWNGSLSLFSIIGAIRTVPHLLYLLSTESFADTMCVSPVGHWGVGATGFWVQMFILSKFPELGDTVFIVLKKKPLLFLHWYHHVTVLLFCWHSYVTESASGLYFVSMNYSVHGIMYGYYALMTARVPMKWFPSELLTLLQIAQMVVGVVV 244
[Close]
BLAST of mRNA_L-elsbetiae_contig1615.4229.1 vs. uniprot
Match: A0A1Z5JZY4_FISSO (Elongation of fatty acids protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JZY4_FISSO)

HSP 1 Score: 220 bits (560), Expect = 1.520e-66
Identity = 117/240 (48.75%), Postives = 141/240 (58.75%), Query Frame = 1 
Query:  295 VNDWNEPYSEIYDWYPWMRKFYSRLEIEKDCISGWLWMRKTSPWLPILICAVYLLFCYVGPKVMAKRKAFDLRGPLVAWNFALSAFSLVGVIRTVPHLFHILSIYGFKYTICAKPTMWYGSGAVGCWTQLFVLSKIPELGDTIFVVLRKKPLIFLHWYHHVTVLLYCWHSYYEQTTYGLYFITMNFTVHAVMYLYYALAG--MKIRLCKPQYITTLQISQMVVGVAVCVAGGYYISKGAE 1008
            VN  N  Y E    YP +   Y+  E   D I    WM K  P +P+  C +Y +  Y G    AKR  ++ R  L  WN  LS FS VG++RT PHLFH L+   F+  +C  P   YGSG+ G W QLF+LSK PEL DT F+V+ KKPLIFLHWYHH+TVLLYCWHSY   +  G+ F  MN+TVHA MY YY L    MK +   P  IT +QISQMVVGVA  +   YY    AE
Sbjct:    9 VNGDNLEYREFSCLYPQVEHLYTSFEKFYDPIPLLNWM-KGQPGIPVAACIIYAVSIYYGQAYFAKRDRWNWRNTLAVWNLFLSVFSFVGMLRTAPHLFHNLTHLSFRDNMCLDPRTTYGSGSTGLWVQLFILSKFPELIDTFFIVIHKKPLIFLHWYHHITVLLYCWHSYVTTSPTGIIFTAMNYTVHATMYGYYFLMALRMKPKWFNPMVITAMQISQMVVGVATTIVSYYYFLTDAE 247
[Close]
BLAST of mRNA_L-elsbetiae_contig1615.4229.1 vs. uniprot
Match: K8YQD6_NANGC (Elongation of fatty acids protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YQD6_NANGC)

HSP 1 Score: 220 bits (560), Expect = 3.620e-66
Identity = 116/253 (45.85%), Postives = 149/253 (58.89%), Query Frame = 1 
Query:  256 WERWGAIAPPTSWVNDWNEPYSEIYDWYPWMRKFYSRLEIEKDCISGWLWMRKTSPWLPILICAVYLLFCYVGPKVMAKRKAFDLRGPLVAWNFALSAFSLVGVIRTVPHLFHILSIYGFKYTICAKPTMWYGSGAVGCWTQLFVLSKIPELGDTIFVVLRKKPLIFLHWYHHVTVLLYCWHSYYEQTTYGLYFITMNFTVHAVMYLYYALAGMKI--RLCKPQYITTLQISQMVVGVAVCVAGGYYISKGAE 1008
            W     I P  S V D N P+++++  YP +  FY+  E      S   + + T P LP+ +C +Y L   VG KVM  R   + +  L  WN  LS FS  G++RTVPHL   ++   FK TIC  P   YG GA G W  LF+ SK+PEL DT+F+V RK  L FLHWYHH+TVLL+CWHSY   ++ GLYF+ MN++VHAVMY YY L  +K       P  IT  QISQM+VGV +CVA  YY+    E
Sbjct:   13 WGEMPKIIPYRS-VPD-NVPFTQLFQHYPVLSPFYTEYEKNFHASSYVNFAQNTWPALPLALCGIYGLMIVVGTKVMESRPKHEWKTALACWNLLLSVFSFCGMLRTVPHLLQNVTTLPFKDTICRHPAETYGEGACGLWVMLFIYSKVPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYAVTSSTGLYFVAMNYSVHAVMYAYYYLTAIKAWPSWIPPSIITVAQISQMMVGVGICVASFYYLYTDPE 263
[Close]
BLAST of mRNA_L-elsbetiae_contig1615.4229.1 vs. uniprot
Match: A0A024UN53_9STRA (Elongation of fatty acids protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UN53_9STRA)

HSP 1 Score: 218 bits (555), Expect = 9.380e-66
Identity = 109/229 (47.60%), Postives = 147/229 (64.19%), Query Frame = 1 
Query:  325 IYDWYPWMRKFYSRLEIEKDCISGW-LWMRKTSPWLPILICAVYLLFCYVGPKVMAKRKAFDLRGPLVAWNFALSAFSLVGVIRTVPHLFHILSIYGFKYTICAKPTMWYGSGAVGCWTQLFVLSKIPELGDTIFVVLRKKPLIFLHWYHHVTVLLYCWHSYYEQTTYGLYFITMNFTVHAVMYLYYALAGMKIRLCKPQYITTLQISQMVVGVAVCVAGGYYISKGAE 1008
            ++++YP +   Y     E   +  W     +++ ++ + +CA Y   CYVG K M  R+AFDL   L  WN  LS FS  G +RTVP L H +  +G  +++C+  T+ YG+G VG W  LF+ SKIPEL DT FVV+RKKPL FLHWYHH+TVLLYCWH+Y   ++ GLYF+ MN+TVHAVMY+YY L  +  R      +T LQ+SQMVVGVAVCVA   ++S  + 
Sbjct:   18 LHEFYPCLAPLYP-FAFENSFMLTWEAQFCRSTMYMCMALCAAYGFSCYVGKKFMRSREAFDLTPALALWNLTLSVFSACGALRTVPFLVHSIYHHGVYHSVCSDATLHYGNGPVGFWVSLFIFSKIPELFDTFFVVIRKKPLRFLHWYHHITVLLYCWHAYSVLSSSGLYFVAMNYTVHAVMYMYYFLTALGYRPRWAYVVTMLQMSQMVVGVAVCVANVIFLSTSSS 245
[Close]
BLAST of mRNA_L-elsbetiae_contig1615.4229.1 vs. uniprot
Match: A0A7S1VJD7_9STRA (Elongation of fatty acids protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VJD7_9STRA)

HSP 1 Score: 218 bits (554), Expect = 1.370e-65
Identity = 113/230 (49.13%), Postives = 142/230 (61.74%), Query Frame = 1 
Query:  316 YSEIYDWYPWMRKFYSRLEIEKDCISGWLWMRKTSPWLPILICAVYLLFCYVGPKVMAKRKAFDLRGPLVAWNFALSAFSLVGVIRTVPHLFHILSIYGFKYTICAKPTMWYGSGAVGCWTQLFVLSKIPELGDTIFVVLRKKPLIFLHWYHHVTVLLYCWHSYYEQTTYGLYFITMNFTVHAVMYLYYALAG--MKIRLCKPQYITTLQISQMVVGVAVCVAGGYYISK 999
            Y E    YP + +FY   E + D I   LWM   + WLP+   +VY + C+ G   M     +  R  L AWNF LS FS VG++RT P+L H L     +  +CA P   +GSG+ G W QLF+LSK PEL DT F+V+ KKPLIFLHWYHH+TVLLYCWHSY   +  G++F+ MN++VHA MY YY L    MK +   P  IT+ QISQM+VGVAV  AG YY  K
Sbjct:   16 YREFSCVYPQLDRFYFSFEKKYDPIPLSLWMEANN-WLPVAAVSVYAILCWRGQVWMKDHDRWHWRYILTAWNFGLSLFSFVGMMRTAPNLLHNLVTMSLEDNMCADPRETFGSGSTGLWVQLFILSKFPELFDTFFIVIHKKPLIFLHWYHHITVLLYCWHSYVSTSPPGIFFVVMNYSVHASMYFYYGLMALRMKPKWMHPMIITSFQISQMIVGVAVTCAGFYYYLK 244
[Close]
BLAST of mRNA_L-elsbetiae_contig1615.4229.1 vs. uniprot
Match: T0R9K8_SAPDV (Elongation of fatty acids protein n=2 Tax=Saprolegniaceae TaxID=4764 RepID=T0R9K8_SAPDV)

HSP 1 Score: 217 bits (553), Expect = 1.470e-65
Identity = 98/190 (51.58%), Postives = 134/190 (70.53%), Query Frame = 1 
Query:  433 ILICAVYLLFCYVGPKVMAKRKAFDLRGPLVAWNFALSAFSLVGVIRTVPHLFHILSIYGFKYTICAKPTMWYGSGAVGCWTQLFVLSKIPELGDTIFVVLRKKPLIFLHWYHHVTVLLYCWHSYYEQTTYGLYFITMNFTVHAVMYLYYALAGMKIRLCKPQYITTLQISQMVVGVAVCVAGGYYISKG 1002
            +++CA+Y + C  G +VM  R AF L+  L  WN  L+ FS++G IRTVP L + L++ G+ + +CA+    YG G V  W  LF+ SKIPEL DT+F+VLRKKPLIFLHWYHH+TVL++CWH+Y   +  GL+F+ MN+TVH VMY YY LA + IR    +++T +Q+ QMVVGVAVC +G YY+  G
Sbjct:   45 VVLCAIYCVLCLGGREVMRSRSAFGLQTALALWNLGLATFSIMGAIRTVPFLLNTLAVRGWHHAVCAEAMPHYGHGPVSFWVTLFIFSKIPELVDTMFIVLRKKPLIFLHWYHHITVLMFCWHAYANLSPSGLFFVAMNYTVHGVMYFYYFLAAIGIRASWAKFVTIIQLLQMVVGVAVCASGVYYVKAG 234
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1615.4229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTN4_9PHAE4.290e-14876.86Elongation of fatty acids protein n=1 Tax=Ectocarp... [more]
D8LFZ1_ECTSI2.060e-11284.78Elongation of fatty acids protein n=1 Tax=Ectocarp... [more]
A0A836CLW9_9STRA3.900e-9265.17Elongation of fatty acids protein n=1 Tax=Tribonem... [more]
A0A835ZI52_9STRA3.190e-8664.62Elongation of fatty acids protein n=1 Tax=Tribonem... [more]
A0A7S4C8Y4_9EUGL1.220e-6748.65Elongation of fatty acids protein n=1 Tax=Eutrepti... [more]
A0A1Z5JZY4_FISSO1.520e-6648.75Elongation of fatty acids protein n=2 Tax=Fistulif... [more]
K8YQD6_NANGC3.620e-6645.85Elongation of fatty acids protein n=3 Tax=Monodops... [more]
A0A024UN53_9STRA9.380e-6647.60Elongation of fatty acids protein n=3 Tax=Aphanomy... [more]
A0A7S1VJD7_9STRA1.370e-6549.13Elongation of fatty acids protein n=1 Tax=Grammato... [more]
T0R9K8_SAPDV1.470e-6551.58Elongation of fatty acids protein n=2 Tax=Saproleg... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1615contigL-elsbetiae_contig1615:16334..21954 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score332.0
Seed ortholog evalue3.2e-88
Seed eggNOG ortholog2880.D8LFZ1
KEGG rclassRC00004,RC00039,RC02728,RC02888,RC02997
KEGG koko:K10203
KEGG ReactionR07758,R07762,R09419,R10825
KEGG Pathwayko00062,ko01040,ko01110,ko01212,map00062,map01040,map01110,map01212
KEGG ModuleM00415
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.very-long-chain 3-ketoacyl-CoA synthase activity
EggNOG OGsKOG3071@1,KOG3072@2759
EC2.3.1.199
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Ec32 ortholog descriptionFatty acid elongase
Ec32 orthologEc-21_005210.1
Exons5
Model size1008
Cds size1008
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1615.4229.1prot_L-elsbetiae_contig1615.4229.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1615 16334..21954 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815667.5075774-CDS-L-elsbetiae_contig1615:16333..164791622815667.5075774-CDS-L-elsbetiae_contig1615:16333..16479Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1615 16334..16479 -
1691683025.6234958-CDS-L-elsbetiae_contig1615:16333..164791691683025.6234958-CDS-L-elsbetiae_contig1615:16333..16479Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1615 16334..16479 -
1622815667.5184414-CDS-L-elsbetiae_contig1615:17001..171641622815667.5184414-CDS-L-elsbetiae_contig1615:17001..17164Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1615 17002..17164 -
1691683025.6348977-CDS-L-elsbetiae_contig1615:17001..171641691683025.6348977-CDS-L-elsbetiae_contig1615:17001..17164Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1615 17002..17164 -
1622815667.5299075-CDS-L-elsbetiae_contig1615:17538..176651622815667.5299075-CDS-L-elsbetiae_contig1615:17538..17665Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1615 17539..17665 -
1691683025.6437342-CDS-L-elsbetiae_contig1615:17538..176651691683025.6437342-CDS-L-elsbetiae_contig1615:17538..17665Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1615 17539..17665 -
1622815667.542691-CDS-L-elsbetiae_contig1615:19019..191981622815667.542691-CDS-L-elsbetiae_contig1615:19019..19198Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1615 19020..19198 -
1691683025.6535687-CDS-L-elsbetiae_contig1615:19019..191981691683025.6535687-CDS-L-elsbetiae_contig1615:19019..19198Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1615 19020..19198 -
1622815667.5554245-CDS-L-elsbetiae_contig1615:21561..219541622815667.5554245-CDS-L-elsbetiae_contig1615:21561..21954Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1615 21562..21954 -
1691683025.670231-CDS-L-elsbetiae_contig1615:21561..219541691683025.670231-CDS-L-elsbetiae_contig1615:21561..21954Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1615 21562..21954 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1615.4229.1

>prot_L-elsbetiae_contig1615.4229.1 ID=prot_L-elsbetiae_contig1615.4229.1|Name=mRNA_L-elsbetiae_contig1615.4229.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=336bp
MLNSPRRSLVPRIAARGNTSRQSFLSLSPRRSSRLDSSARGKAQRERLRV
SSALSGGQQKRRASCLREKNKNPSTRRRNIMMETDWERWGAIAPPTSWVN
DWNEPYSEIYDWYPWMRKFYSRLEIEKDCISGWLWMRKTSPWLPILICAV
YLLFCYVGPKVMAKRKAFDLRGPLVAWNFALSAFSLVGVIRTVPHLFHIL
SIYGFKYTICAKPTMWYGSGAVGCWTQLFVLSKIPELGDTIFVVLRKKPL
IFLHWYHHVTVLLYCWHSYYEQTTYGLYFITMNFTVHAVMYLYYALAGMK
IRLCKPQYITTLQISQMVVGVAVCVAGGYYISKGAE
back to top

mRNA from alignment at L-elsbetiae_contig1615:16334..21954-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1615.4229.1 ID=mRNA_L-elsbetiae_contig1615.4229.1|Name=mRNA_L-elsbetiae_contig1615.4229.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5621bp|location=Sequence derived from alignment at L-elsbetiae_contig1615:16334..21954- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTGAACAGCCCCCGCCGTTCGCTGGTTCCGCGCATTGCGGCGAGAGG
CAATACTTCCCGCCAATCGTTTCTCTCTCTCTCTCCACGCCGGAGCTCGC
GACTTGACAGCAGTGCACGCGGTAAGGCTCAAAGGGAACGTCTCCGTGTG
TCTTCCGCCCTCTCTGGTGGACAACAGAAGAGGAGAGCGAGTTGTTTGCG
CGAGAAGAACAAAAACCCTTCCACCAGACGACGCAATATAATGATGGAGA
CGGATTGGGAGAGGTGGGGCGCGATAGCCCCTCCGACCTCGTGGGTCAAC
GACTGGAACGAGCCCTACTCGGAGATTTACGACTGGTACCCTTGGATGCG
GAAGTTCTACTCGCGGCTCGAGATCGAGAAGGACTGCATATCGGTGAGGG
AGAGCGTCTCTCTGTCTTCTCTTACGCACGAAAACAGGGTTTTGAGGTGC
TGATGTGTCACGGATGCCGGATGATTGTTTCGCTTGTCCGCGCACAAGTA
GCGCTGGGCAAGAGGTGTCGCAGCAATGGGGCGCTCAGTCTTGTGACTGA
AAGGCGTGGGAGGAAGTGCCAGACCGCTCCTTCCTTTGCCGACCTCCGGC
GGTCTCGCCCTTCCAAAAAACATGTGGTATGAAAAATAGATCCTGTGTGG
GCGTTGAACAGAAGCGTTTTCTCTGGGCCAAGGCCTGCTCAACTGCTGTC
GTCGCGCTGGTGCGGTGGACCCCCATTCATTCCGCCGTTGCGCTAAGCCG
TGATCCCCTCTTTTTGGCGGTGGCAGCCTGCGGATGCGAAGAGTAAGGTC
TTTGCAGCTGTGGCTGACTTGTTTTGGTCCTATTCCCTCCCACCCCCCCC
CCACCCCAGACGGTTGCTCTATTTTTTCAAATGCGAGCTCGCCGGGGCAA
TATCTTGCTTTTCTCCCGCGGGGGGGGGCATGGTCCCCTGTAGATTGGCG
TACGCGAACTGTATGTGCTGCTTTATTGGCCGTAACACGGACAGCAGTGG
GTGCGATTGCCACGGGGTATGTCATGCTCGGTTGGCGTGGTCGGGGTTGT
TGTTGGCTTCACATCAAAACTAAAACCGTTCCGATCTCTCCACCCCGGTC
TGTTTCTGAGAAAGCATCTAGACCTTTTTCATGTAATTACTTCACTTATA
CTTGTAAATATGCAGCGATTCCTGTGCTTTTTAAGTGGTGGTACATTCGC
TGCGTTCGCGGTTTGCGGCCAGCACCGCCGTAGCTGCGCGCATGGGAGAT
GGAGGACTAGACTTACCACTGTTGCTGTACCCCTTGCAGCAGACGACGAG
GTGGCGGCTGTACTTTGGTTATGTACAGGTGTAGTAGTGGGTGGGAGGAA
TCACGCTCGTCGCTCCCGCGTGTGCCTGTTGCTCGGTGCGCTCGAGTTAG
ACATTTCGATATCGGAATGTTTAATTAACACTTTTTGGATCGCACCGTCT
CTCATGTGGGCTAGGTACCATTTCCGGTAAACTGATCTCTATCAACACTG
CTTGCTGCCTGCCGAGAGGGGATCTCTCCTTGTAAGAATTTAGATGCAAG
ATAACTTTTTTTTTCCTCAGGGCATGGCTTCTTGTTTTGAGGACGGCCTT
GTCGCCAGGGGCTGCAGACTCCAGATTGAAGCACCCCCGACGTTTGCAGC
CAGTAAGCAAATCGCACAACAACAGTAGAGGAACCCGTGAGCCTTTTTTG
AGCCGCAAAGCTTGTGTGTGATGCCTCTCGCTCGACGCCGTCCCACGCCA
CAAACAGCAGTACCACAGTAATTTTGAGTACAATCATATGTAGTACTGGG
CCCTGTGCTATATAGTGCAGGTTGAATTTCTGGCACAGACAGCGCCCTCA
TTAGTGCAGGTCCTGCACTAATGAGGAAGATCCCGATATAGTGCAAGTTG
GCCACCGCGGTGCCCCGCAATAGTGCAGGTTAGGTACACACACACACATG
ATCGCAGCGCATTCCGCTAGGCGGGTGCGCCAGGTAGACATGAGAGAGTT
TGTCGAGACGTAGTGAGGGCGGGGGGTACGTGGTTGTTGTTTTTTTGTTT
GCAGTGAGCTTCCTCTATGCTTTTCTCGTTTTTTGTTTTTTTTTCTTTCA
ACATCGCAGCGAGTGCGCCGAGCAGGTATGGGGGAGTTTGTCACGACATA
ATAGTGAGGGCGAGGGGTGCATGGTTGTTTTTCTTGCGATGCCTTCCTGC
TATGCTTGTCTTGGTTTGTGTGTGTTGTTTCTTGCAAAATCGAAGCGGGT
GCGCCAGGCAGACATGAGAGTTTTGTCGCCACGTAATGAGGGCGGGGGGC
AGCAGTACATGGTTGCTCGTTTTTTTGCAGTGCGCTTTCTGTCGTTTCTT
TTTCTGGTTTGTCTTTTTCTATCTTGCAACATCAAAGAAACGCAACGAGG
ACTGAGATTTAGCTTCGTCCACTTGTAATACATGATCTCAATCCATTTCA
TACTCTGTTGGCCCCGCAAAGCGTGAAGTCAAAGAGTGCTTCAATAGTGC
AGGACCTGCACCATTAAGGGATATTCAAAACCTCATTAGTGCCGAACCTG
CACTATTGAGGCACTCTTATCAGTACTGCAGGTGCCCGCTATACTGCAGG
TAAAGCTTCTCGACAGACCCCTGCACTAAATAGGGCCCAGTACTGTACCC
TCACCGCCACACTTCTCCGGTTAGGCCACCACCAACCTCAACTTTGAATC
CCCCCCCCCTTCCCCTCTCCGAAACCCTCCTGCCTCGCCGCCAACACCAT
CGTCAGGGGTGGCTGTGGATGCGGAAGACGAGCCCCTGGCTGCCTATCCT
CATCTGCGCGGTGTACCTCCTCTTCTGCTACGTGGGGCCCAAGGTGATGG
CGAAGCGGAAAGCTTTCGACCTCCGCGGCCCGCTGGTGGCGTGGAACTTC
GCGCTGTCGGCGTTCTCCCTTGTGGGGGTGATTCGGTGAGTAGAAGGGGA
AAGTTGTCGAGAGTGCCTGTCACGTCATCACTACATAAGCTGTTGCTGTA
GTATAGCTTTGCCGTGCGAGAGAAGAAACGAGGCATGGATGAGGAGATGG
AGCGGGGGGCTCTGCTGGGTGTGGCGGGGGTGGGGGCTATTGGGGTGACG
AGTATGCCGTTCATGGGGAGAGAAGATGCGGGCAGCCGGAGAACGGAAGG
GAAGAGGTTGTGTGTGTGAAACATAGAAAGTAGGACAGATCCCAGCATGC
ACCGGTCGAGTGAGAGCGAGTGCAAAGAGAGGAGCACGGAGGGAAGGGAA
GGGAAGGAAGAGAAGCAGTATTGTGTCAGTGTACCGCGGAAGTAGGCTTA
GGCCCATTATGCTGGCATAGCTTTTAGCATAATTCGCACCTGAGAGCATA
CGATTATGCTCTGTTTTTTGGAGCATAAAGGGGGCATATTTGCCACTTTT
CAGCATAATTGAGATTTTTGAGATGAATTAGCATAATTGGCCTTTATTTG
GGGCAAACAAGCATTTTATTGGGGTTGAAAAAAGGAGCATAAGAGGGAAA
AAAGCGTAATGGGCCTAAGTCCCAGCGGTATGTATTGAATTGTTGTAAGG
GAGGGGACTCAAGAATGGAACAGAGGGGGACGGTGATCTAGGAAAGGAGG
GAAAGAGGCAACCAGTACACAGTCAGCGGTGCCAGACGAAGAGGGGGGGG
GGGGGCATGTTGTATGTCCAAAACGCGAGTTGCATGGCACCAGGTACGCA
GAGGCTAGACAAGAAGTACACATGTATGTATGTACATGCTCAACATATTG
TGTGCCTGGGGGGTGTTCCGACGATGGGGGCGACATACTGCGAAACAGAT
GAAGGTAGGAGACGCGGGAAAAAGAGGGGAGCATCTGGGAGGGAGAAAGT
ACTGCACATGTCCCACACACGGATGTGCATCCCTCAGCTGAGATCGTCGA
TGGGAAGAAGAACCCATACCTCAAGAAAGATAGATGCATTCGGGCTTTTT
TTGTTCTTTGTCGTATCATGTGCGTGATCGTCGAGACAGCAGCAGTTGAA
AACGGTTAATTTCTGACGGTGAAACGCACCTAGTTTTACTCGGTTGTGTA
CCTGAAATACCTTTAAAAAGCCCCTTTCCCTCCTCCTGCCCCCCCTACCC
CTCTCTTCTCCCTCTTTTCTCATGGCTGCTCCGATAAACAGAGAATGTGC
ACGGAAGTTTTGTGATCCAGATCAAAAACCAAACCAAACCCTTAATTAAC
AACCCCTCCGTGTTTCGCCTGTGTTTTTATTTGCCATTCGCGCGTGAACG
TGGGCGTTTTACACCCGGCTGCCTCCCATGCACGCTCAGCACTGTGCCTC
ACCTTTTCCATATCCTCTCCATCTACGGGTTCAAGTACACCATCTGCGCC
AAGCCGACCATGTGGTACGGCTCGGGGGCTGTCGGATGCTGGACCCAACT
GTTCGTGCTTTCTAAGGTGGGTGGCTGGGATGTTACAAGATGAAAGAGGA
ACGCCCGGGGCGGCGTGAAAGGGGCGCACGCGGCCCGTGGGGGCTTCGTG
ATTCTATTTTGGGGTGGGGTTGGTTTCGACATCGAATGCGAGGAGATAGA
TGGTAAAGGGTTGGAGGGGGAGCTCTTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTTTCAGCTTGTATGTATGATGCGCGCTGCGGCCGCATGTGGCAGCT
GGGTTTGTGATGGTTACGGCGGTCCAACCTCCGCCGACCGCCTGCCCACC
CCACCGTCTCTCTCCTCCTCCCCTCTCTTAGTCCTCAGCCTTTTGTTCTC
TTGTGCTTTTCTCTGTTGTGTCCATATTGTGTTGTGTTAGATTCCTGAGC
TAGGCGACACCATCTTCGTCGTGCTCCGCAAGAAGCCGCTCATCTTCCTG
CACTGGTACCACCACGTGACGGTGTTGCTGTACTGCTGGCACTCGTACTA
CGAGCAAACCACCTACGGGCTGTACTTCATCACCATGAACTTCACCGTGC
ACGGTAAGCGTCGAGTCCAACCGCATCCTATCCACTCTACTAGATTCAGC
CGACAGCCAGCCTACTGCGTGGCACGGAGGTTGTGGGGGGGGGTTATGGT
TCCTCTGCGGATCCCCCTTCTTTCCTTTTGCGACTGCTGTGTACTGCTTG
TGCACGCCCGCCCCCGCCCGCTTGTTGTTGTTGTCTTTACATTAAAAACC
GTTCGTATCTCTCTTATCTAGCACCTCCATGAGTCCGTACTAATCCAACA
CTGATGCGGTCGATTCCCGTGGTCACAGAATAACCTACCTTAAGCGGGCG
TACTGAAAAAATAACGTTACTATACCTTTTATTTTCCATTTGTTTTACCT
GACGTCCACCGCTGTCTGTCTGTTGGTCTGCATGATACGTACGTTTTTTT
TCCAAGTGTTTCATCTGACGTCCACCGCTGTCTGCCTGCCTGCCTGTGTG
TTTGTGTGCATGACCTCTTGTGGTCTTTTCGTTGCGCCTGCTTCTGCATT
CGATCGACCCCCCTCGCCCTTCCAGCCGTCATGTACCTCTACTACGCGCT
GGCCGGCATGAAGATCCGCCTCTGCAAGCCCCAGTACATCACCACGCTCC
AGATCAGCCAGATGGTGGTCGGTGTGGCCGTGTGTGTCGCTGGAGGGTAC
TACATTTCGAAAGGTGCGGAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1615:16334..21954-

>mRNA_L-elsbetiae_contig1615.4229.1 ID=mRNA_L-elsbetiae_contig1615.4229.1|Name=mRNA_L-elsbetiae_contig1615.4229.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2016bp|location=Sequence derived from alignment at L-elsbetiae_contig1615:16334..21954- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTGAACAGCCCCCGCCGTTCGCTGGTTCCGCGCATTGCGGCGAGAGG
CAATACTTCCCGCCAATCGTTTCTCTCTCTCTCTCCACGCCGGAGCTCGC
GACTTGACAGCAGTGCACGCGGTAAGGCTCAAAGGGAACGTCTCCGTGTG
TCTTCCGCCCTCTCTGGTGGACAACAGAAGAGGAGAGCGAGTTGTTTGCG
CGAGAAGAACAAAAACCCTTCCACCAGACGACGCAATATAATGATGGAGA
CGGATTGGGAGAGGTGGGGCGCGATAGCCCCTCCGACCTCGTGGGTCAAC
GACTGGAACGAGCCCTACTCGGAGATTTACGACTGGTACCCTTGGATGCG
GAAGTTCTACTCGCGGCTCGAGATCGAGAAGGACTGCATATCGATGTTGA
ACAGCCCCCGCCGTTCGCTGGTTCCGCGCATTGCGGCGAGAGGCAATACT
TCCCGCCAATCGTTTCTCTCTCTCTCTCCACGCCGGAGCTCGCGACTTGA
CAGCAGTGCACGCGGTAAGGCTCAAAGGGAACGTCTCCGTGTGTCTTCCG
CCCTCTCTGGTGGACAACAGAAGAGGAGAGCGAGTTGTTTGCGCGAGAAG
AACAAAAACCCTTCCACCAGACGACGCAATATAATGATGGAGACGGATTG
GGAGAGGTGGGGCGCGATAGCCCCTCCGACCTCGTGGGTCAACGACTGGA
ACGAGCCCTACTCGGAGATTTACGACTGGTACCCTTGGATGCGGAAGTTC
TACTCGCGGCTCGAGATCGAGAAGGACTGCATATCGGGGTGGCTGTGGAT
GCGGAAGACGAGCCCCTGGCTGCCTATCCTCATCTGCGCGGTGTACCTCC
TCTTCTGCTACGTGGGGCCCAAGGTGATGGCGAAGCGGAAAGCTTTCGAC
CTCCGCGGCCCGCTGGTGGCGTGGAACTTCGCGCTGTCGGCGTTCTCCCT
TGTGGGGGTGATTCGGGGTGGCTGTGGATGCGGAAGACGAGCCCCTGGCT
GCCTATCCTCATCTGCGCGGTGTACCTCCTCTTCTGCTACGTGGGGCCCA
AGGTGATGGCGAAGCGGAAAGCTTTCGACCTCCGCGGCCCGCTGGTGGCG
TGGAACTTCGCGCTGTCGGCGTTCTCCCTTGTGGGGGTGATTCGCACTGT
GCCTCACCTTTTCCATATCCTCTCCATCTACGGGTTCAAGTACACCATCT
GCGCCAAGCCGACCATGTGGTACGGCTCGGGGGCTGTCGGATGCTGGACC
CAACTGTTCGTGCTTTCTAAGCACTGTGCCTCACCTTTTCCATATCCTCT
CCATCTACGGGTTCAAGTACACCATCTGCGCCAAGCCGACCATGTGGTAC
GGCTCGGGGGCTGTCGGATGCTGGACCCAACTGTTCGTGCTTTCTAAGAT
TCCTGAGCTAGGCGACACCATCTTCGTCGTGCTCCGCAAGAAGCCGCTCA
TCTTCCTGCACTGGTACCACCACGTGACGGTGTTGCTGTACTGCTGGCAC
TCGTACTACGAGCAAACCACCTACGGGCTGTACTTCATCACCATGAACTT
CACCGTGCACGATTCCTGAGCTAGGCGACACCATCTTCGTCGTGCTCCGC
AAGAAGCCGCTCATCTTCCTGCACTGGTACCACCACGTGACGGTGTTGCT
GTACTGCTGGCACTCGTACTACGAGCAAACCACCTACGGGCTGTACTTCA
TCACCATGAACTTCACCGTGCACGCCGTCATGTACCTCTACTACGCGCTG
GCCGGCATGAAGATCCGCCTCTGCAAGCCCCAGTACATCACCACGCTCCA
GATCAGCCAGATGGTGGTCGGTGTGGCCGTGTGTGTCGCTGGAGGGTACT
ACATTTCGAAAGGTGCGGAGCCGTCATGTACCTCTACTACGCGCTGGCCG
GCATGAAGATCCGCCTCTGCAAGCCCCAGTACATCACCACGCTCCAGATC
AGCCAGATGGTGGTCGGTGTGGCCGTGTGTGTCGCTGGAGGGTACTACAT
TTCGAAAGGTGCGGAG
back to top