mRNA_L-elsbetiae_contig16149.4226.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16149.4226.1
Unique NamemRNA_L-elsbetiae_contig16149.4226.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig16149.4226.1 vs. uniprot
Match: D8LNC2_ECTSI (COP9 signalosome complex subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNC2_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 8.580e-44
Identity = 75/80 (93.75%), Postives = 77/80 (96.25%), Query Frame = 1
Query:    1 EEEQGIWGFKALKQTMKLLFSMSAFEEFTKCYTQLLGYTKGAVTQNVGEKGVNSVLDYVSSSNDWGLLKGFYEQTLDTLR 240
            EEEQGIWGFKALKQ MKLLF MSAF+EFT CYTQLLGYTKGAV+QNVGEKGVNSVLDYVSSSNDWGLLKGFYEQTLDTLR
Sbjct:   84 EEEQGIWGFKALKQMMKLLFKMSAFQEFTDCYTQLLGYTKGAVSQNVGEKGVNSVLDYVSSSNDWGLLKGFYEQTLDTLR 163          
BLAST of mRNA_L-elsbetiae_contig16149.4226.1 vs. uniprot
Match: H3GHW8_PHYRM (COP9 signalosome complex subunit 2 n=15 Tax=Peronosporaceae TaxID=4777 RepID=H3GHW8_PHYRM)

HSP 1 Score: 101 bits (252), Expect = 1.420e-23
Identity = 46/80 (57.50%), Postives = 62/80 (77.50%), Query Frame = 1
Query:    1 EEEQGIWGFKALKQTMKLLFSMSAFEEFTKCYTQLLGYTKGAVTQNVGEKGVNSVLDYVSSSNDWGLLKGFYEQTLDTLR 240
            + EQ  WGFKALK+T+KLLF +   +   + Y +LLGYTK AVT+NVGEKG+NS+LD+VS+S  W +L+ FYE TL+TL+
Sbjct:   63 QTEQSDWGFKALKRTVKLLFELQRHDAAMRTYEELLGYTKTAVTRNVGEKGINSILDFVSTSKSWDVLQKFYETTLETLK 142          
BLAST of mRNA_L-elsbetiae_contig16149.4226.1 vs. uniprot
Match: A0A8K1FC14_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FC14_PYTOL)

HSP 1 Score: 99.8 bits (247), Expect = 7.180e-23
Identity = 45/79 (56.96%), Postives = 62/79 (78.48%), Query Frame = 1
Query:    4 EEQGIWGFKALKQTMKLLFSMSAFEEFTKCYTQLLGYTKGAVTQNVGEKGVNSVLDYVSSSNDWGLLKGFYEQTLDTLR 240
            E Q  WGFKALK+ +KL F ++ ++   K Y +LLGYTK AVT+NVGEKG+NS+LD+VS+S +W +L+ FYE TL+TL+
Sbjct:   64 ESQSDWGFKALKRIVKLHFELNRYDAAIKRYEELLGYTKSAVTRNVGEKGINSILDFVSTSKNWEILQRFYETTLETLK 142          
BLAST of mRNA_L-elsbetiae_contig16149.4226.1 vs. uniprot
Match: A0A0P1AF91_PLAHL (COP9 signalosome complex subunit 2 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AF91_PLAHL)

HSP 1 Score: 98.2 bits (243), Expect = 2.250e-22
Identity = 44/74 (59.46%), Postives = 60/74 (81.08%), Query Frame = 1
Query:   19 WGFKALKQTMKLLFSMSAFEEFTKCYTQLLGYTKGAVTQNVGEKGVNSVLDYVSSSNDWGLLKGFYEQTLDTLR 240
            WGFKALK+ +KLLF +   +E  + Y +LLGYTK AVT+NVGEKG+NS+LD+VS+S +W +L+ FYE TL+TL+
Sbjct:   68 WGFKALKRIVKLLFELQRHDEAMRRYEELLGYTKTAVTRNVGEKGINSILDFVSTSKNWEILQQFYETTLETLK 141          
BLAST of mRNA_L-elsbetiae_contig16149.4226.1 vs. uniprot
Match: A0A484DTH4_BRELC (COP9 signalosome complex subunit 2 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DTH4_BRELC)

HSP 1 Score: 98.2 bits (243), Expect = 2.890e-22
Identity = 44/74 (59.46%), Postives = 60/74 (81.08%), Query Frame = 1
Query:   19 WGFKALKQTMKLLFSMSAFEEFTKCYTQLLGYTKGAVTQNVGEKGVNSVLDYVSSSNDWGLLKGFYEQTLDTLR 240
            WGFKALK+ +KLLF +   +E  + Y +LLGYTK AVT+NVGEKG+NS+LD+VS+S +W +L+ FYE TL+TL+
Sbjct:   69 WGFKALKRIVKLLFDLHHHDEAMRTYEELLGYTKTAVTRNVGEKGINSILDFVSTSKNWEILQRFYETTLETLK 142          
BLAST of mRNA_L-elsbetiae_contig16149.4226.1 vs. uniprot
Match: UPI000719CF87 (COP9 signalosome complex subunit 2-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719CF87)

HSP 1 Score: 94.0 bits (232), Expect = 7.690e-22
Identity = 45/80 (56.25%), Postives = 58/80 (72.50%), Query Frame = 1
Query:    1 EEEQGIWGFKALKQTMKLLFSMSAFEEFTKCYTQLLGYTKGAVTQNVGEKGVNSVLDYVSSSNDWGLLKGFYEQTLDTLR 240
            EE++G WGFKALKQ +K+ F +S +EE    Y QLL Y K AVT+N  EK +NS+LDY+S+S +  LL+ FYE TLD LR
Sbjct:   50 EEDKGEWGFKALKQMIKINFKLSNYEEMMTRYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMELLQEFYETTLDALR 129          
BLAST of mRNA_L-elsbetiae_contig16149.4226.1 vs. uniprot
Match: B3S818_TRIAD (COP9 signalosome complex subunit 2 n=2 Tax=Trichoplax TaxID=10227 RepID=B3S818_TRIAD)

HSP 1 Score: 95.1 bits (235), Expect = 3.310e-21
Identity = 45/80 (56.25%), Postives = 58/80 (72.50%), Query Frame = 1
Query:    1 EEEQGIWGFKALKQTMKLLFSMSAFEEFTKCYTQLLGYTKGAVTQNVGEKGVNSVLDYVSSSNDWGLLKGFYEQTLDTLR 240
            EEE+G WGFKALKQ +K+ F M  F +  + Y QLL Y K AVT+N  EK +NS+LDY+S+S++  LL+ FYE TLD LR
Sbjct:   60 EEEKGDWGFKALKQMIKINFKMKKFHQMMEKYQQLLTYIKSAVTRNYSEKSINSILDYISTSDEADLLQNFYETTLDALR 139          
BLAST of mRNA_L-elsbetiae_contig16149.4226.1 vs. uniprot
Match: F0WS67_9STRA (COP9 signalosome complex subunit 2 n=3 Tax=Albugo TaxID=65356 RepID=F0WS67_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 4.710e-21
Identity = 42/80 (52.50%), Postives = 61/80 (76.25%), Query Frame = 1
Query:    1 EEEQGIWGFKALKQTMKLLFSMSAFEEFTKCYTQLLGYTKGAVTQNVGEKGVNSVLDYVSSSNDWGLLKGFYEQTLDTLR 240
            ++E+  WGFKALK+ +KL F    ++     Y +LLGYTK +VT+NVGEKG+NS+LD+VS+S +W +L+ FYE TL+TL+
Sbjct:   61 QQEESDWGFKALKRIVKLHFDKKEYDNAILRYEELLGYTKSSVTRNVGEKGINSILDHVSTSKNWEILQRFYETTLETLK 140          
BLAST of mRNA_L-elsbetiae_contig16149.4226.1 vs. uniprot
Match: UPI000CEAD62C (COP9 signalosome complex subunit 2-like n=1 Tax=Salvelinus alpinus TaxID=8036 RepID=UPI000CEAD62C)

HSP 1 Score: 88.2 bits (217), Expect = 6.240e-21
Identity = 42/80 (52.50%), Postives = 55/80 (68.75%), Query Frame = 1
Query:    1 EEEQGIWGFKALKQTMKLLFSMSAFEEFTKCYTQLLGYTKGAVTQNVGEKGVNSVLDYVSSSNDWGLLKGFYEQTLDTLR 240
            E E+G WGFKALKQ +K+ F ++ F E    Y QLL Y + AVT+N  EK +NS+LDY+S+S    LL+ FYE TLD L+
Sbjct:   17 EGEKGEWGFKALKQMIKINFKLTNFPEMMSRYKQLLTYIRSAVTRNYSEKSINSILDYISTSKQMDLLQEFYETTLDALK 96          
BLAST of mRNA_L-elsbetiae_contig16149.4226.1 vs. uniprot
Match: A0A8I6RDF2_CIMLE (COP9 signalosome complex subunit 2 n=1 Tax=Cimex lectularius TaxID=79782 RepID=A0A8I6RDF2_CIMLE)

HSP 1 Score: 94.4 bits (233), Expect = 6.270e-21
Identity = 43/79 (54.43%), Postives = 58/79 (73.42%), Query Frame = 1
Query:    4 EEQGIWGFKALKQTMKLLFSMSAFEEFTKCYTQLLGYTKGAVTQNVGEKGVNSVLDYVSSSNDWGLLKGFYEQTLDTLR 240
            E++G WGFKALKQ +KLLF +  +++    Y +LL Y K +VT+N  EK +NS+LDYVSSS D GLL+ FYE TL+ L+
Sbjct:   60 EQKGEWGFKALKQVIKLLFKLGKYDDMMASYKRLLTYIKSSVTRNHSEKSINSILDYVSSSKDMGLLQSFYETTLEALK 138          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16149.4226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNC2_ECTSI8.580e-4493.75COP9 signalosome complex subunit 2 n=2 Tax=Ectocar... [more]
H3GHW8_PHYRM1.420e-2357.50COP9 signalosome complex subunit 2 n=15 Tax=Perono... [more]
A0A8K1FC14_PYTOL7.180e-2356.96Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0P1AF91_PLAHL2.250e-2259.46COP9 signalosome complex subunit 2 n=1 Tax=Plasmop... [more]
A0A484DTH4_BRELC2.890e-2259.46COP9 signalosome complex subunit 2 n=1 Tax=Bremia ... [more]
UPI000719CF877.690e-2256.25COP9 signalosome complex subunit 2-like n=1 Tax=Pr... [more]
B3S818_TRIAD3.310e-2156.25COP9 signalosome complex subunit 2 n=2 Tax=Trichop... [more]
F0WS67_9STRA4.710e-2152.50COP9 signalosome complex subunit 2 n=3 Tax=Albugo ... [more]
UPI000CEAD62C6.240e-2152.50COP9 signalosome complex subunit 2-like n=1 Tax=Sa... [more]
A0A8I6RDF2_CIMLE6.270e-2154.43COP9 signalosome complex subunit 2 n=1 Tax=Cimex l... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16149contigL-elsbetiae_contig16149:2598..3725 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.0
Seed ortholog evalue7.4e-36
Seed eggNOG ortholog2880.D8LNC2
Preferred nameCOPS2
KEGG koko:K12176
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000122,GO:0000338,GO:0000715,GO:0000909,GO:0002009,GO:0003006,GO:0003674,GO:0003712,GO:0003714,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007282,GO:0007283,GO:0007292,GO:0007293,GO:0007399,GO:0007517,GO:0007519,GO:0008134,GO:0008150,GO:0008152,GO:0008180,GO:0008230,GO:0008231,GO:0008283,GO:0008356,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009653,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0014706,GO:0016043,GO:0016070,GO:0016333,GO:0016922,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019827,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0023052,GO:0030154,GO:0030163,GO:0030182,GO:0030582,GO:0030584,GO:0030718,GO:0030727,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031647,GO:0031935,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032991,GO:0033043,GO:0033044,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035257,GO:0035914,GO:0036099,GO:0036211,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043235,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044798,GO:0045892,GO:0045934,GO:0046483,GO:0046983,GO:0048134,GO:0048135,GO:0048138,GO:0048140,GO:0048142,GO:0048232,GO:0048468,GO:0048477,GO:0048513,GO:0048519,GO:0048523,GO:0048608,GO:0048609,GO:0048646,GO:0048699,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051301,GO:0051427,GO:0051704,GO:0051716,GO:0060255,GO:0060429,GO:0060537,GO:0060538,GO:0060968,GO:0061061,GO:0061458,GO:0065007,GO:0065008,GO:0070013,GO:0070646,GO:0070647,GO:0070791,GO:0071704,GO:0071840,GO:0075259,GO:0080090,GO:0090052,GO:0090054,GO:0090304,GO:0090575,GO:0097659,GO:0098727,GO:0140110,GO:1901360,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1902275,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.protein deneddylation
EggNOG OGsCOG5159@1,KOG1464@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Ec32 ortholog descriptionProteasome component (PCI) domain
Ec32 orthologEc-04_004400.1
Exons2
Model size240
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815667.328869-CDS-L-elsbetiae_contig16149:2597..27061622815667.328869-CDS-L-elsbetiae_contig16149:2597..2706Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16149 2598..2706 +
1691683025.4940135-CDS-L-elsbetiae_contig16149:2597..27061691683025.4940135-CDS-L-elsbetiae_contig16149:2597..2706Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16149 2598..2706 +
1622815667.3394823-CDS-L-elsbetiae_contig16149:3594..37251622815667.3394823-CDS-L-elsbetiae_contig16149:3594..3725Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16149 3595..3725 +
1691683025.5135808-CDS-L-elsbetiae_contig16149:3594..37251691683025.5135808-CDS-L-elsbetiae_contig16149:3594..3725Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16149 3595..3725 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16149.4226.1prot_L-elsbetiae_contig16149.4226.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16149 2598..3725 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16149.4226.1

>prot_L-elsbetiae_contig16149.4226.1 ID=prot_L-elsbetiae_contig16149.4226.1|Name=mRNA_L-elsbetiae_contig16149.4226.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=80bp
EEEQGIWGFKALKQTMKLLFSMSAFEEFTKCYTQLLGYTKGAVTQNVGEK
GVNSVLDYVSSSNDWGLLKGFYEQTLDTLR
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mRNA from alignment at L-elsbetiae_contig16149:2598..3725+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16149.4226.1 ID=mRNA_L-elsbetiae_contig16149.4226.1|Name=mRNA_L-elsbetiae_contig16149.4226.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1128bp|location=Sequence derived from alignment at L-elsbetiae_contig16149:2598..3725+ (Laminarionema elsbetiae ELsaHSoW15)
GAGGAGGAGCAGGGCATCTGGGGGTTCAAGGCCCTTAAACAAACGATGAA GCTCTTGTTCTCCATGTCGGCGTTCGAGGAGTTCACAAAATGCTACACGC AGCTTCTGGGTCAGTAAATAGTGGAGGGGGGAGGGGGGAGGGGGGAGGGG GAGGTCCTTTCCATTCCTTCCTCTTGGTTTTTGTGCGAGGTTTTGTACGA TACTGGCCTATGTAATTTGCATGCTTTTTTTTTCGCACGCACTGCGGCAA CGTGTTTTTCGCCTTCTGTTATTGTAGTGCAGTCTTCAAGGGCGATCGAT CCCTATCCCACTGTGTTCCACGCTGTTTTCAGTCTACGCTATACAAATCG CGCGAGTTTGATGCGTCTGTTCGCCAAGGTATGCATCACGAAAACACCCC CCATCCCTGGTGTCCGTATCAATACCCACGCCCTCGACCGCCATGTGTAC CATCCACGTGGACTCTATTTAGAAACCACCTCCTCTACTACTGCTGTACA TCGAAGGGGCAGGGGCGTAAGCACAAACATCGCATTCGGCCGACTTGGCT CAGAAAGCCGCACCATCAGCGTTAACCATACAGCGAGGATAAGGACGTCG AAGTCCGAGAGACAGACAGACCGACAGATAGGCAGGCAGGCAGGCAGGCA GGCAGACGAACACATAGAGACAGGGGAAGATATCTTAGTGTGCTTTTACG CGAAACGCGCTACCCCCTACTGCTATGGTGCGGTGCCCCCATCTGCTTCG AGTGCTACCCATGTAACAAGACGCTTTATCTCTTCTCTCTTTCTCTCTTC TCAGACTTTCTTCGTCTCTACTTTCTTCGTCTCTCTTACTTTTTATTTCG ATCGAGGTCAAAAGCATGGATGGCACCACGGAAGAAAAGCGTGACGCGCG CGCGCATCACTTTTTTTTTCGTTCTGTTTTGTTTGGCTTGTTGTTTTATT TTCTCTCCTCGGTTTTTTTCTCTGGCTCGTCCAAAAACGCCGTCCAGGGT ACACGAAGGGAGCCGTGACGCAGAACGTGGGGGAGAAGGGCGTCAACAGC GTGCTCGACTACGTGTCTTCCTCCAACGACTGGGGCCTCCTCAAGGGGTT CTATGAGCAGACGCTGGACACGCTCAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16149:2598..3725+

>mRNA_L-elsbetiae_contig16149.4226.1 ID=mRNA_L-elsbetiae_contig16149.4226.1|Name=mRNA_L-elsbetiae_contig16149.4226.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=480bp|location=Sequence derived from alignment at L-elsbetiae_contig16149:2598..3725+ (Laminarionema elsbetiae ELsaHSoW15)
GAGGAGGAGCAGGGCATCTGGGGGTTCAAGGCCCTTAAACAAACGATGAA
GCTCTTGTTCTCCATGTCGGCGTTCGAGGAGTTCACAAAATGCTACACGC
AGCTTCTGGGAGGAGGAGCAGGGCATCTGGGGGTTCAAGGCCCTTAAACA
AACGATGAAGCTCTTGTTCTCCATGTCGGCGTTCGAGGAGTTCACAAAAT
GCTACACGCAGCTTCTGGGGTACACGAAGGGAGCCGTGACGCAGAACGTG
GGGGAGAAGGGCGTCAACAGCGTGCTCGACTACGTGTCTTCCTCCAACGA
CTGGGGCCTCCTCAAGGGGTTCTATGAGCAGACGCTGGACACGCTCAGGG
GTACACGAAGGGAGCCGTGACGCAGAACGTGGGGGAGAAGGGCGTCAACA
GCGTGCTCGACTACGTGTCTTCCTCCAACGACTGGGGCCTCCTCAAGGGG
TTCTATGAGCAGACGCTGGACACGCTCAGG
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