mRNA_L-elsbetiae_contig10417.422.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10417.422.1
Unique NamemRNA_L-elsbetiae_contig10417.422.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10417.422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10417contigL-elsbetiae_contig10417:5882..6278 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size397
Cds size342
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815267.2334647-UTR-L-elsbetiae_contig10417:5881..59361622815267.2334647-UTR-L-elsbetiae_contig10417:5881..5936Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10417 5882..5936 +
1691682806.3253126-UTR-L-elsbetiae_contig10417:5881..59361691682806.3253126-UTR-L-elsbetiae_contig10417:5881..5936Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10417 5882..5936 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815267.2433991-CDS-L-elsbetiae_contig10417:5936..62781622815267.2433991-CDS-L-elsbetiae_contig10417:5936..6278Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10417 5937..6278 +
1691682806.3397694-CDS-L-elsbetiae_contig10417:5936..62781691682806.3397694-CDS-L-elsbetiae_contig10417:5936..6278Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10417 5937..6278 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10417.422.1prot_L-elsbetiae_contig10417.422.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10417 5937..6278 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10417.422.1

>prot_L-elsbetiae_contig10417.422.1 ID=prot_L-elsbetiae_contig10417.422.1|Name=mRNA_L-elsbetiae_contig10417.422.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=114bp
MSMYLCPRRQSHATYRYSITCIPHANGTPARSSRAIFQDTASSARTATLQ
LHAQHAPQKRGHNQRTKTTRSIKICYIQVVATKRGHDQRTTKTTRSTKKY
AIQVVAATTSSSQ*
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mRNA from alignment at L-elsbetiae_contig10417:5882..6278+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10417.422.1 ID=mRNA_L-elsbetiae_contig10417.422.1|Name=mRNA_L-elsbetiae_contig10417.422.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=397bp|location=Sequence derived from alignment at L-elsbetiae_contig10417:5882..6278+ (Laminarionema elsbetiae ELsaHSoW15)
GTCGGCATATTATATAAATAAAATCACGAACGACACAAACGCAACAAAAT
GAAAGATGAGCATGTATTTATGCCCCCGAAGACAATCTCACGCTACATAT
AGGTACAGCATCACATGTATACCACACGCAAACGGCACCCCGGCAAGGTC
TAGTCGAGCCATTTTTCAGGATACGGCATCTTCAGCACGCACAGCAACGC
TCCAGCTTCACGCGCAACACGCGCCGCAGAAAAGGGGCCACAACCAACGC
ACAAAAACAACGCGAAGCATAAAAATATGCTATATCCAAGTGGTGGCCAC
CAAAAGGGGCCACGACCAACGCACAACAAAAACAACGCGAAGCACAAAAA
AATATGCTATCCAAGTGGTGGCCGCCACCACCTCTTCTTCTCAGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10417:5882..6278+

>mRNA_L-elsbetiae_contig10417.422.1 ID=mRNA_L-elsbetiae_contig10417.422.1|Name=mRNA_L-elsbetiae_contig10417.422.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=684bp|location=Sequence derived from alignment at L-elsbetiae_contig10417:5882..6278+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCATGTATTTATGCCCCCGAAGACAATCTCACGCTACATATAGGTA
CAGCATCACATGTATACCACACGCAAACGGCACCCCGGCAAGGTCTAGTC
GAGCCATTTTTCAGGATACGGCATCTTCAGCACGCACAGCAACGCTCCAG
CTTCACGCGCAACACGCGCCGCAGAAAAGGGGCCACAACCAACGCACAAA
AACAACGCGAAGCATAAAAATATGCTATATCCAAGTGGTGGCCACCAAAA
GGGGCCACGACCAACGCACAACAAAAACAACGCGAAGCACAAAAAAATAT
GCTATCCAAGTGGTGGCCGCCACCACCTCTTCTTCTCAGTAGATGAGCAT
GTATTTATGCCCCCGAAGACAATCTCACGCTACATATAGGTACAGCATCA
CATGTATACCACACGCAAACGGCACCCCGGCAAGGTCTAGTCGAGCCATT
TTTCAGGATACGGCATCTTCAGCACGCACAGCAACGCTCCAGCTTCACGC
GCAACACGCGCCGCAGAAAAGGGGCCACAACCAACGCACAAAAACAACGC
GAAGCATAAAAATATGCTATATCCAAGTGGTGGCCACCAAAAGGGGCCAC
GACCAACGCACAACAAAAACAACGCGAAGCACAAAAAAATATGCTATCCA
AGTGGTGGCCGCCACCACCTCTTCTTCTCAGTAG
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