mRNA_L-elsbetiae_contig16144.4219.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16144.4219.1
Unique NamemRNA_L-elsbetiae_contig16144.4219.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16144.4219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16144contigL-elsbetiae_contig16144:2..2111 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size606
Cds size393
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16144.4219.1prot_L-elsbetiae_contig16144.4219.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16144 800..2111 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815666.9348042-UTR-L-elsbetiae_contig16144:1..1321622815666.9348042-UTR-L-elsbetiae_contig16144:1..132Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16144 2..132 +
1691683025.3092012-UTR-L-elsbetiae_contig16144:1..1321691683025.3092012-UTR-L-elsbetiae_contig16144:1..132Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16144 2..132 +
1622815666.9457853-UTR-L-elsbetiae_contig16144:717..7991622815666.9457853-UTR-L-elsbetiae_contig16144:717..799Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16144 718..799 +
1691683025.3169975-UTR-L-elsbetiae_contig16144:717..7991691683025.3169975-UTR-L-elsbetiae_contig16144:717..799Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16144 718..799 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815666.9569426-CDS-L-elsbetiae_contig16144:799..9821622815666.9569426-CDS-L-elsbetiae_contig16144:799..982Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16144 800..982 +
1691683025.3247318-CDS-L-elsbetiae_contig16144:799..9821691683025.3247318-CDS-L-elsbetiae_contig16144:799..982Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16144 800..982 +
1622815666.9683573-CDS-L-elsbetiae_contig16144:1116..12241622815666.9683573-CDS-L-elsbetiae_contig16144:1116..1224Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16144 1117..1224 +
1691683025.3324382-CDS-L-elsbetiae_contig16144:1116..12241691683025.3324382-CDS-L-elsbetiae_contig16144:1116..1224Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16144 1117..1224 +
1622815666.9782298-CDS-L-elsbetiae_contig16144:1613..16761622815666.9782298-CDS-L-elsbetiae_contig16144:1613..1676Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16144 1614..1676 +
1691683025.3430982-CDS-L-elsbetiae_contig16144:1613..16761691683025.3430982-CDS-L-elsbetiae_contig16144:1613..1676Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16144 1614..1676 +
1622815666.9930038-CDS-L-elsbetiae_contig16144:2072..21111622815666.9930038-CDS-L-elsbetiae_contig16144:2072..2111Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16144 2073..2111 +
1691683025.3539598-CDS-L-elsbetiae_contig16144:2072..21111691683025.3539598-CDS-L-elsbetiae_contig16144:2072..2111Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16144 2073..2111 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16144.4219.1

>prot_L-elsbetiae_contig16144.4219.1 ID=prot_L-elsbetiae_contig16144.4219.1|Name=mRNA_L-elsbetiae_contig16144.4219.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=131bp
MFLHYFLAEKEDETPVKLERGVMFDTKGNADDTWEAVLHRVDAQLRREGF
KGKRVPVWGSKIGQGSGRASRVEIKCAAWGTARVPKIIVKRRTWSSKCKC
DFGVAVSWNSTSPPTIQKIKLEHVLECKMEA
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mRNA from alignment at L-elsbetiae_contig16144:2..2111+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16144.4219.1 ID=mRNA_L-elsbetiae_contig16144.4219.1|Name=mRNA_L-elsbetiae_contig16144.4219.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2110bp|location=Sequence derived from alignment at L-elsbetiae_contig16144:2..2111+ (Laminarionema elsbetiae ELsaHSoW15)
CCAGTGACGAAGAGAGCGACTGCGACTCAGATGGTTGGGAGGGTTGGGAG
AGTGCAGGGGACGATTCGACCGACAAGGAAGGTTGGTGATGGAAATTGAG
TCGCGAGAATCCCCCAACACTCAGGAGTATGGTCTGTGCACAAAAAATTG
TCCCACAAATGGGCAGCACCCACGTACAATTTTCTCCACACAGTGTATCC
AGACAGGGTATTCAGACATAGGTCCACTTTTCTCAGCGGATTCAGACATT
CCTCGGAATTTTCGAAGTGCGTCTTCGTTTTTTATTTCAAATAGTTCCAT
TTCATGGAGATATCGTTCAAGAACTGGATCTGGAGAGTCAACTTGGTTAG
TTTTATACAAGATACTGTCACCAATCAACCGATTTCAAAACAAACAACGA
CAAACGATTCCTTTTCTAAATCAGTCCCTGGGTGCGTATTATTCTTTCTA
GGGAAAACTCTGGTTGTCAAGATACCACGTTTCGTTTTGCAGTCATTCTC
CAATATTGGTTAGGGGTGAAGCATATTGACCGAGGGGCTACGTGGTGTAC
ACAGGGGGCTCCGTGGGTAATTTGTTGACTGAAAACGGTCCATCTTATCT
AAATGGTAAACATCGGCAGCTATCGACGGGTCTCGACGAGGCGGTCATGA
CGATTGTTGTTTCACGTTCCACATAATTCTTTGACAAAGTTTATCGGACA
AAACGCGATTGAAAAGGGTTACGGTCGCCGAAAGTTTGACTTAACCTCAT
ACGAGTACCGCACGTGCAGCACATGCTCTTGGTTGCAGCGACATACCCAT
GTTTCTGCATTATTTTCTGGCAGAGAAAGAAGACGAAACGCCGGTTAAAC
TCGAGCGCGGTGTTATGTTTGACACCAAAGGAAACGCCGACGACACGTGG
GAGGCGGTGTTGCACAGGGTCGACGCACAGCTTCGCCGCGAAGGATTCAA
GGGGAAAAGAGTCCCTGTTTGGGGAAGTAAGGTGCGCCCCAAGCGTCGAC
GTTGTTGTTGTCTTGATTTCAATTCCCGGCCACGATAGAGGGCCTTTTGA
AACCAGGACGTTCCTGCCGACCACACTGAAGTTTTATCGCATCTCGAAAT
GAATTGCACGAGCAGATCGGACAGGGATCCGGCCGAGCGAGCCGAGTGGA
GATCAAGTGTGCCGCTTGGGGGACTGCCAGAGTGCCGAAAATAATCGTAA
AGAGGAGGACTTGGTCTTCCAAGGCAAGCGTTCAAATAACTGTTCTACCT
TACCGCTGCCCGTTATAGGTAGTTGAAATTGCAATTCCGAGTATGTGCTT
CGGGCTTGCAATAACGAATGAAAATATTGAGCAATGCTGGTGGTGGCTCT
AGCACGGGGGGGGGGGCGGCGCTCCGTCTCGAAAGGATGGGTGGTCAGTA
AGCAGATGATATAAAAGCTAGCACAATTGAGTACCCCACCGTTCTGCATG
TTTGTTTTCGACTTTGGGTAGGAACTAGGGGGGCGGTGCTCCGTCTCGAA
AGGGATGCGTGTTCAATGGTCTAACGACGAAGGCCAAGCAACAGCAGTTG
ACCCCCCCCCCGACCGTTTCCTGTCTTGCCGATATGTTCGTGTTTTGTGT
TTTGACTCTCAGTGCAAGTGCGACTTTGGCGTCGCCGTCTCCTGGAACAG
CACCTCACCCCCAACAATTCAGAAGGTGTGTCTGTGTGTGTGTTGTCTTC
ACATTAAAAAACCGTTCCGATCTCTCCATCCAGTACCTCTCAACGTCCGT
ACCAATCCAACACTTGATGCGGTCAATTCCCGTGATCACAGGCTAACTTA
CACCTAAGAAAGGTACACGAAAAATGAAATGGACCCGAAGGGCCAGCAAA
GCAATACTAAAACAGATATCGAATCTGGAACCCTTCGCTCCCCTCTACAC
GCTATGTGAGAAGGTGGCGTGTTGACAATCCGCCCGGGGTACTAGGGTGG
CGGCCAGAAGACTGTCGGTGGTGGGGGCGGAGCTGCGGTCACTGTTGTGG
TTCCGCAGACACGGTGACCTAGGGGCCTTCAACCCTAACCACCGCCGTCC
TTCTGTCAATCGTCTGTCCAGATCAAGCTTGAGCACGTCCTGGAATGCAA
GATGGAAGCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16144:2..2111+

>mRNA_L-elsbetiae_contig16144.4219.1 ID=mRNA_L-elsbetiae_contig16144.4219.1|Name=mRNA_L-elsbetiae_contig16144.4219.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=786bp|location=Sequence derived from alignment at L-elsbetiae_contig16144:2..2111+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTCTGCATTATTTTCTGGCAGAGAAAGAAGACGAAACGCCGGTTAA
ACTCGAGCGCGGTGTTATGTTTGACACCAAAGGAAACGCCGACGACACGT
GGGAGGCGGTGTTGCACAGGGTCGACGCACAGCTTCGCCGCGAAGGATTC
AAGGGGAAAAGAGTCCCTGTTTGGGGAAGTAAGATGTTTCTGCATTATTT
TCTGGCAGAGAAAGAAGACGAAACGCCGGTTAAACTCGAGCGCGGTGTTA
TGTTTGACACCAAAGGAAACGCCGACGACACGTGGGAGGCGGTGTTGCAC
AGGGTCGACGCACAGCTTCGCCGCGAAGGATTCAAGGGGAAAAGAGTCCC
TGTTTGGGGAAGTAAGATCGGACAGGGATCCGGCCGAGCGAGCCGAGTGG
AGATCAAGTGTGCCGCTTGGGGGACTGCCAGAGTGCCGAAAATAATCGTA
AAGAGGAGGACTTGGTCTTCCAAGATCGGACAGGGATCCGGCCGAGCGAG
CCGAGTGGAGATCAAGTGTGCCGCTTGGGGGACTGCCAGAGTGCCGAAAA
TAATCGTAAAGAGGAGGACTTGGTCTTCCAAGTGCAAGTGCGACTTTGGC
GTCGCCGTCTCCTGGAACAGCACCTCACCCCCAACAATTCAGAAGTGCAA
GTGCGACTTTGGCGTCGCCGTCTCCTGGAACAGCACCTCACCCCCAACAA
TTCAGAAGATCAAGCTTGAGCACGTCCTGGAATGCAAGATGGAAGCTATC
AAGCTTGAGCACGTCCTGGAATGCAAGATGGAAGCT
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