mRNA_L-elsbetiae_contig16131.4212.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16131.4212.1
Unique NamemRNA_L-elsbetiae_contig16131.4212.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16131.4212.1 vs. uniprot
Match: D7FIA4_ECTSI (Protein phosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIA4_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 7.500e-40
Identity = 80/113 (70.80%), Postives = 89/113 (78.76%), Query Frame = 3 
Query:   33 MRNAFSTFLAAAAGGTYAIAFVKPAGWMPP------PNSIINGELHATLLSLEVDSSMIARPDKAARGGDDAYFINAGDSGALDLGVFDGVGGWSRRGYDPGVFTRGFAKAAA 353
            MR A ST LAAA GGT+AIAFV PAGW PP      P  + N +   TL +L+VDSSMIARPDKAARGGDDAYF+N GDSGALDLGVFDGVGGW+  G+DPGVF+RGFAKA A
Sbjct:    1 MRGALSTVLAAA-GGTHAIAFVNPAGWAPPRIKSSKPWGVQNLKAQQTL-TLDVDSSMIARPDKAARGGDDAYFVNVGDSGALDLGVFDGVGGWASLGHDPGVFSRGFAKATA 111
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BLAST of mRNA_L-elsbetiae_contig16131.4212.1 vs. uniprot
Match: A0A7J7IP48_9RHOD (Protein phosphatase n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IP48_9RHOD)

HSP 1 Score: 55.8 bits (133), Expect = 1.120e-6
Identity = 33/83 (39.76%), Postives = 46/83 (55.42%), Query Frame = 3 
Query:   96 VKPAGWMPPPNSIINGELHATLLSLEVDSSMIARPDKAARGGDDAYFINAGDSGALDLGVFDGVGGWSRRGYDPGVFTRGFAK 344
            VKP  W+     + +  LH     L+  +++I   DK  RGG+DA+FI          GVFDGVGGWS  G DPG+++R  A+
Sbjct:   65 VKPRSWL----ILCSQRLH-----LQAGAAVIPHRDKRDRGGEDAFFITK-----RAAGVFDGVGGWSALGIDPGLYSRRLAE 133
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BLAST of mRNA_L-elsbetiae_contig16131.4212.1 vs. uniprot
Match: A0A118K224_CYNCS (Protein phosphatase n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=A0A118K224_CYNCS)

HSP 1 Score: 54.3 bits (129), Expect = 3.310e-6
Identity = 28/79 (35.44%), Postives = 46/79 (58.23%), Query Frame = 3 
Query:  117 PPPNSIINGELHATLLSLEVDSSMIARPDKAARGGDDAYFINAGDSGALDLGVFDGVGGWSRRGYDPGVFTRGFAKAAA 353
            PP N ++  EL      + V + +I  P KAA+GG+DA+F+++ + G +   V DGV GW+ +  DP  F+R   + A+
Sbjct:   39 PPFNPVVRPEL-----CIRVGTQLIPHPKKAAKGGEDAFFVSSYNGGVI--AVADGVSGWAEKDVDPAQFSRELMRKAS 110
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BLAST of mRNA_L-elsbetiae_contig16131.4212.1 vs. uniprot
Match: UPI000D62AA17 (probable protein phosphatase 2C 26 isoform X1 n=3 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=UPI000D62AA17)

HSP 1 Score: 54.3 bits (129), Expect = 3.490e-6
Identity = 28/79 (35.44%), Postives = 46/79 (58.23%), Query Frame = 3 
Query:  117 PPPNSIINGELHATLLSLEVDSSMIARPDKAARGGDDAYFINAGDSGALDLGVFDGVGGWSRRGYDPGVFTRGFAKAAA 353
            PP N ++  EL      + V + +I  P KAA+GG+DA+F+++ + G +   V DGV GW+ +  DP  F+R   + A+
Sbjct:   39 PPFNPVVRPEL-----CIRVGTQLIPHPKKAAKGGEDAFFVSSYNGGVI--AVADGVSGWAEKDVDPAQFSRELMRKAS 110
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BLAST of mRNA_L-elsbetiae_contig16131.4212.1 vs. uniprot
Match: M1V717_CYAM1 (Protein phosphatase n=2 Tax=cellular organisms TaxID=131567 RepID=M1V717_CYAM1)

HSP 1 Score: 54.3 bits (129), Expect = 3.900e-6
Identity = 27/61 (44.26%), Postives = 37/61 (60.66%), Query Frame = 3 
Query:  162 LSLEVDSSMIARPDKAARGGDDAYFINAGDSGALDLGVFDGVGGWSRRGYDPGVFTRGFAK 344
            L  +   +MI  P+K  RGG+DA+F+          GVFDGVGGWS  G DPG+++R  A+
Sbjct:   78 LHFQAGVAMIPHPNKRQRGGEDAFFLTK-----RAAGVFDGVGGWSALGVDPGLYSRRLAE 133
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BLAST of mRNA_L-elsbetiae_contig16131.4212.1 vs. uniprot
Match: A0A7S0ZJ95_9RHOD (Protein phosphatase n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZJ95_9RHOD)

HSP 1 Score: 53.9 bits (128), Expect = 4.680e-6
Identity = 26/49 (53.06%), Postives = 36/49 (73.47%), Query Frame = 3 
Query:  189 IARPDKAARGGDDAYFINAGDSGALDL-GVFDGVGGWSRRGYDPGVFTR 332
            I  PDK A+GG+DAYF+N+     LD+ GVFDGVGGW+  G DP ++++
Sbjct:   46 IPHPDKQAKGGEDAYFVNS----KLDVVGVFDGVGGWASLGIDPKLYSQ 90
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BLAST of mRNA_L-elsbetiae_contig16131.4212.1 vs. uniprot
Match: F0XF18_GROCL (Protein phosphatase n=1 Tax=Grosmannia clavigera (strain kw1407 / UAMH 11150) TaxID=655863 RepID=F0XF18_GROCL)

HSP 1 Score: 53.1 bits (126), Expect = 9.910e-6
Identity = 26/54 (48.15%), Postives = 32/54 (59.26%), Query Frame = 3 
Query:  195 RPDKAARGGDDAYFI-NAGDSGALDLGVFDGVGGWSRRGYDPGVFTRGFAKAAA 353
            RP      G DA+F+ N GDSGA+ LG+ DGVGGW   G DP  F+ G  +  A
Sbjct:   62 RPGSRPESGQDAFFVSNVGDSGAVALGIADGVGGWMDSGVDPADFSHGLCEYMA 115
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BLAST of mRNA_L-elsbetiae_contig16131.4212.1 vs. uniprot
Match: D8S3P4_SELML (Protein phosphatase (Fragment) n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8S3P4_SELML)

HSP 1 Score: 52.8 bits (125), Expect = 1.030e-5
Identity = 23/55 (41.82%), Postives = 36/55 (65.45%), Query Frame = 3 
Query:  168 LEVDSSMIARPDKAARGGDDAYFINAGDSGALDLGVFDGVGGWSRRGYDPGVFTR 332
            L + + +I  PDKA++GG+DA+FI+  D G    G+ DGV GW+    DP +F++
Sbjct:    1 LSIGAKVIPHPDKASKGGEDAFFISDFDGGVF--GIADGVSGWAEENVDPALFSK 53
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BLAST of mRNA_L-elsbetiae_contig16131.4212.1 vs. uniprot
Match: D8R5B0_SELML (Protein phosphatase (Fragment) n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8R5B0_SELML)

HSP 1 Score: 52.8 bits (125), Expect = 1.200e-5
Identity = 23/55 (41.82%), Postives = 36/55 (65.45%), Query Frame = 3 
Query:  168 LEVDSSMIARPDKAARGGDDAYFINAGDSGALDLGVFDGVGGWSRRGYDPGVFTR 332
            L + + +I  PDKA++GG+DA+FI+  D G    G+ DGV GW+    DP +F++
Sbjct:    1 LSIGAKVIPHPDKASKGGEDAFFISDFDGGVF--GIADGVSGWAEENVDPALFSK 53
[Close]
BLAST of mRNA_L-elsbetiae_contig16131.4212.1 vs. uniprot
Match: A0A0D2JIS4_9CHLO (Protein phosphatase n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2JIS4_9CHLO)

HSP 1 Score: 52.8 bits (125), Expect = 1.370e-5
Identity = 26/51 (50.98%), Postives = 34/51 (66.67%), Query Frame = 3 
Query:  180 SSMIARPDKAARGGDDAYFINAGDSGALDLGVFDGVGGWSRRGYDPGVFTR 332
            +SM+  PDKA RGG+DA+FI+      L +GV DGVGGW+  G D G + R
Sbjct:  183 ASMLPHPDKAHRGGEDAFFIS---DPPLAVGVADGVGGWAEIGVDAGAYAR 230
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16131.4212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7FIA4_ECTSI7.500e-4070.80Protein phosphatase n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A7J7IP48_9RHOD1.120e-639.76Protein phosphatase n=1 Tax=Cyanidiococcus yangmin... [more]
A0A118K224_CYNCS3.310e-635.44Protein phosphatase n=1 Tax=Cynara cardunculus var... [more]
UPI000D62AA173.490e-635.44probable protein phosphatase 2C 26 isoform X1 n=3 ... [more]
M1V717_CYAM13.900e-644.26Protein phosphatase n=2 Tax=cellular organisms Tax... [more]
A0A7S0ZJ95_9RHOD4.680e-653.06Protein phosphatase n=1 Tax=Timspurckia oligopyren... [more]
F0XF18_GROCL9.910e-648.15Protein phosphatase n=1 Tax=Grosmannia clavigera (... [more]
D8S3P4_SELML1.030e-541.82Protein phosphatase (Fragment) n=1 Tax=Selaginella... [more]
D8R5B0_SELML1.200e-541.82Protein phosphatase (Fragment) n=3 Tax=Selaginella... [more]
A0A0D2JIS4_9CHLO1.370e-550.98Protein phosphatase n=1 Tax=Monoraphidium neglectu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16131contigL-elsbetiae_contig16131:1097..2114 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score150.2
Seed ortholog evalue5.4e-34
Seed eggNOG ortholog2880.D7FIA4
KEGG koko:K12815,ko:K14773,ko:K17508
KEGG Pathwayko03040,map03040
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009657,GO:0009668,GO:0009987,GO:0010027,GO:0016043,GO:0016311,GO:0019538,GO:0035970,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051716,GO:0061024,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0104004,GO:1901564
EggNOG free text desc.phosphoprotein phosphatase activity
EggNOG OGsCOG0631@1,KOG1379@2759
EC3.1.3.16,3.6.4.13
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009,ko03009,ko03041
Exons2
Model size354
Cds size321
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16131.4212.1prot_L-elsbetiae_contig16131.4212.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16131 1129..2114 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815666.3941462-UTR-L-elsbetiae_contig16131:1096..11281622815666.3941462-UTR-L-elsbetiae_contig16131:1096..1128Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16131 1097..1128 +
1691683024.9617293-UTR-L-elsbetiae_contig16131:1096..11281691683024.9617293-UTR-L-elsbetiae_contig16131:1096..1128Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16131 1097..1128 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815666.409901-CDS-L-elsbetiae_contig16131:1128..13121622815666.409901-CDS-L-elsbetiae_contig16131:1128..1312Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16131 1129..1312 +
1691683024.973061-CDS-L-elsbetiae_contig16131:1128..13121691683024.973061-CDS-L-elsbetiae_contig16131:1128..1312Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16131 1129..1312 +
1622815666.4222028-CDS-L-elsbetiae_contig16131:1977..21141622815666.4222028-CDS-L-elsbetiae_contig16131:1977..2114Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16131 1978..2114 +
1691683024.9820597-CDS-L-elsbetiae_contig16131:1977..21141691683024.9820597-CDS-L-elsbetiae_contig16131:1977..2114Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16131 1978..2114 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16131.4212.1

>prot_L-elsbetiae_contig16131.4212.1 ID=prot_L-elsbetiae_contig16131.4212.1|Name=mRNA_L-elsbetiae_contig16131.4212.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
MRNAFSTFLAAAAGGTYAIAFVKPAGWMPPPNSIINGELHATLLSLEVDS
SMIARPDKAARGGDDAYFINAGDSGALDLGVFDGVGGWSRRGYDPGVFTR
GFAKAAA
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mRNA from alignment at L-elsbetiae_contig16131:1097..2114+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16131.4212.1 ID=mRNA_L-elsbetiae_contig16131.4212.1|Name=mRNA_L-elsbetiae_contig16131.4212.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1018bp|location=Sequence derived from alignment at L-elsbetiae_contig16131:1097..2114+ (Laminarionema elsbetiae ELsaHSoW15)
GCACAACGCTCACACACCACGCAAGCACGGCTATGAGAAACGCATTTTCC
ACCTTTCTGGCTGCTGCTGCAGGAGGAACGTATGCCATCGCCTTTGTGAA
ACCGGCTGGTTGGATGCCACCACCCAACTCGATCATCAACGGAGAACTGC
ATGCGACCCTGCTCTCGCTCGAGGTCGATAGCTCGATGATCGCCCGGCCA
GACAAAGCGGCGAGAGGTGGGTCGCGATGCCATTGGAAGAGGAATACACG
TGCCAGCACTCGTAGAAAAGCGCGGGATGGGTGCCTTCTCGGTTTCAAAG
CTGTTTGTATAATACTACCTAACAACATAGTCTACCCTCTTCCATCGCCG
ACGTGGCGGGTCACACACATGGCATATGAACGTGTTTGCTTGGCAGCTCG
TACTTGCGCTTCTCCTTCCATTCACACTCTTGGGCCGAAGCGCAGATACA
TCTGAGTTTTGCCACTGTCATATGCCGCAGGCGGAGAGAGGGCTGTCGTT
AGCTGCTGCTGATAGTACATAGGGTCTACAACGTGTTTTTTGTTTCGCGG
GACTGTCAACGGACGAGAGTGGATGTGCACCTGATGTGCACATGTGCACT
TAGACAGCGTGTGTTATTATAGCACCCGTCTACATAGTCTATGTGTGTCA
CAGCAGTATTTTTGATCCGGCGGAGGATAACCAAATATGAGAGCCACTTA
CATGGTGCATCAAAACGTTTTGTGCCGTGTTCTCTTTTTACAAGATGCAG
CCAGGAAAGGGCCATGCCTGGGTGAACGTGCGTACATATGGTTGGAACTG
CTGCGGACTGCAGACAAAGAGGCCTGTGGAGTGTAGAGGCTCCTTTGGTT
CACAATAATTTGCCTCGCCTTCCCGTCACAGGCGGCGATGACGCCTATTT
CATTAATGCTGGTGATTCGGGCGCTCTGGATCTAGGAGTGTTTGATGGAG
TCGGAGGCTGGTCGCGCAGAGGCTACGATCCAGGGGTGTTTACTCGAGGG
TTTGCCAAAGCGGCGGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16131:1097..2114+

>mRNA_L-elsbetiae_contig16131.4212.1 ID=mRNA_L-elsbetiae_contig16131.4212.1|Name=mRNA_L-elsbetiae_contig16131.4212.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig16131:1097..2114+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGAAACGCATTTTCCACCTTTCTGGCTGCTGCTGCAGGAGGAACGTA
TGCCATCGCCTTTGTGAAACCGGCTGGTTGGATGCCACCACCCAACTCGA
TCATCAACGGAGAACTGCATGCGACCCTGCTCTCGCTCGAGGTCGATAGC
TCGATGATCGCCCGGCCAGACAAAGCGGCGAGAGATGAGAAACGCATTTT
CCACCTTTCTGGCTGCTGCTGCAGGAGGAACGTATGCCATCGCCTTTGTG
AAACCGGCTGGTTGGATGCCACCACCCAACTCGATCATCAACGGAGAACT
GCATGCGACCCTGCTCTCGCTCGAGGTCGATAGCTCGATGATCGCCCGGC
CAGACAAAGCGGCGAGAGGCGGCGATGACGCCTATTTCATTAATGCTGGT
GATTCGGGCGCTCTGGATCTAGGAGTGTTTGATGGAGTCGGAGGCTGGTC
GCGCAGAGGCTACGATCCAGGGGTGTTTACTCGAGGGTTTGCCAAAGCGG
CGGCAGCGGCGATGACGCCTATTTCATTAATGCTGGTGATTCGGGCGCTC
TGGATCTAGGAGTGTTTGATGGAGTCGGAGGCTGGTCGCGCAGAGGCTAC
GATCCAGGGGTGTTTACTCGAGGGTTTGCCAAAGCGGCGGCA
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