mRNA_L-elsbetiae_contig10415.421.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10415.421.1
Unique NamemRNA_L-elsbetiae_contig10415.421.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10415.421.1 vs. uniprot
Match: A0A6H5JDM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDM8_9PHAE)

HSP 1 Score: 405 bits (1042), Expect = 5.590e-134
Identity = 259/400 (64.75%), Postives = 286/400 (71.50%), Query Frame = 3 
Query:  204 MIAATRYPAFSRNFEDEQDYADAAVSAARKANPLPSGLSLAPILRWKRRERQRQ-------DSSSKKFKCKTLVVGFEGGGASFAQKCFGL-AEDADWIGTVVLPGAPSSRSTDATSTTGGLGDSLNPADPLNSACNIFLKR------------VGEGSGGADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSTPSPNPDATDSNREDGGVAVALCGYRVPPRQAGAWAKALLGAIDAEVVVVLATVAAEPGRSEGWPGARLVATAEAEEREDCLKMSEGFQPLRTPTMLSGAPAALVSYCQRHGRAAMCFAAAELPGRRAVPXXXXXXXXXXXXXXXXXXSLLFAERSLSCTRKPIGVVAGEAMVSGGGGGVEGVDKQVDAVDSATSSLYI 1343
            MIAATRYPAFSRNFEDEQDYADAAVSAARKAN LPSG+ LAPILRWKRR+           ++SS K KCKTLVVGFEGGGASFAQKCFGL AE+ADWIGTVVLPGAP S + DA STTGG+GDSL+P DPLNSACNIF K              GEG G A+              XXXXXXXXXXXXXXXXXXXXXX      + D  + +  D  V V LCGYRVPPRQA +WAKALLG I+AEVVV L TV AEPGRSEGW GARL+ATAEAEEREDCLKMS GFQPLRTPTMLSGAPAALVSYCQRHG+AAMCFAAAE PGRR                      L  A+R+LSC R+ +G+VAG A+V  GG    G  K++ A++ A SSLY+
Sbjct:    1 MIAATRYPAFSRNFEDEQDYADAAVSAARKANSLPSGVKLAPILRWKRRQXXXXXXXXXXGEASSHKVKCKTLVVGFEGGGASFAQKCFGLTAEEADWIGTVVLPGAPCSGA-DAASTTGGIGDSLDPTDPLNSACNIFRKTWAGKDNRGWNCDKGEGCGEAEPLSNGSNANGNPPGXXXXXXXXXXXXXXXXXXXXXXXXXXVASKDFHEGSGSD--VLVVLCGYRVPPRQADSWAKALLGGIEAEVVVALTTVEAEPGRSEGWRGARLLATAEAEEREDCLKMSVGFQPLRTPTMLSGAPAALVSYCQRHGQAAMCFAAAESPGRRVTALPQQVRQQLGVDGGGGGGRLALAQRNLSCAREALGIVAGAAVVVSGGEETGG--KEMGALEDAPSSLYV 395
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10415.421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JDM8_9PHAE5.590e-13464.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10415contigL-elsbetiae_contig10415:2244..5530 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-10_001870.1
Exons3
Model size1795
Cds size1143
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10415.421.1prot_L-elsbetiae_contig10415.421.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10415 2447..5081 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815267.1511204-UTR-L-elsbetiae_contig10415:2243..24461622815267.1511204-UTR-L-elsbetiae_contig10415:2243..2446Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10415 2244..2446 +
1691682806.2763941-UTR-L-elsbetiae_contig10415:2243..24461691682806.2763941-UTR-L-elsbetiae_contig10415:2243..2446Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10415 2244..2446 +
1622815267.1986501-UTR-L-elsbetiae_contig10415:5081..55301622815267.1986501-UTR-L-elsbetiae_contig10415:5081..5530Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10415 5082..5530 +
1691682806.3147585-UTR-L-elsbetiae_contig10415:5081..55301691682806.3147585-UTR-L-elsbetiae_contig10415:5081..5530Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10415 5082..5530 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815267.1631246-CDS-L-elsbetiae_contig10415:2446..26201622815267.1631246-CDS-L-elsbetiae_contig10415:2446..2620Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10415 2447..2620 +
1691682806.2849371-CDS-L-elsbetiae_contig10415:2446..26201691682806.2849371-CDS-L-elsbetiae_contig10415:2446..2620Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10415 2447..2620 +
1622815267.179022-CDS-L-elsbetiae_contig10415:3262..38801622815267.179022-CDS-L-elsbetiae_contig10415:3262..3880Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10415 3263..3880 +
1691682806.2961524-CDS-L-elsbetiae_contig10415:3262..38801691682806.2961524-CDS-L-elsbetiae_contig10415:3262..3880Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10415 3263..3880 +
1622815267.1893249-CDS-L-elsbetiae_contig10415:4730..50811622815267.1893249-CDS-L-elsbetiae_contig10415:4730..5081Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10415 4731..5081 +
1691682806.3059013-CDS-L-elsbetiae_contig10415:4730..50811691682806.3059013-CDS-L-elsbetiae_contig10415:4730..5081Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10415 4731..5081 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10415.421.1

>prot_L-elsbetiae_contig10415.421.1 ID=prot_L-elsbetiae_contig10415.421.1|Name=mRNA_L-elsbetiae_contig10415.421.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=381bp
MIAATRYPAFSRNFEDEQDYADAAVSAARKANPLPSGLSLAPILRWKRRE
RQRQDSSSKKFKCKTLVVGFEGGGASFAQKCFGLAEDADWIGTVVLPGAP
SSRSTDATSTTGGLGDSLNPADPLNSACNIFLKRVGEGSGGADNNSGGDN
SSGNDERSSSDGGGGGGTVETTGGGGGGDSSTPSPNPDATDSNREDGGVA
VALCGYRVPPRQAGAWAKALLGAIDAEVVVVLATVAAEPGRSEGWPGARL
VATAEAEEREDCLKMSEGFQPLRTPTMLSGAPAALVSYCQRHGRAAMCFA
AAELPGRRAVPPQQPQQQQAGGEGGSSGGSLLFAERSLSCTRKPIGVVAG
EAMVSGGGGGVEGVDKQVDAVDSATSSLYI*
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mRNA from alignment at L-elsbetiae_contig10415:2244..5530+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10415.421.1 ID=mRNA_L-elsbetiae_contig10415.421.1|Name=mRNA_L-elsbetiae_contig10415.421.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3287bp|location=Sequence derived from alignment at L-elsbetiae_contig10415:2244..5530+ (Laminarionema elsbetiae ELsaHSoW15)
CAAGAAGAGGACAAACACCACCCCTCTGAAAACCGGCGTGTGCAGTGCGT
AAACGTCGGGCGAGGTTGAGATCCTTCTCCAGTCCTCCGCGCCCCTCAAC
TACCAAAGAGACCGCGCGGTCCCAAGTTCAAATCTTGAGAGGCCGGGCTC
GTGTTCTCCAGCAGAACACTCCGGAGCAGTACAGGCCTAGGCCGTAGCCC
ACCATGATCGCGGCCACGCGGTATCCGGCCTTCTCCAGAAACTTTGAAGA
CGAGCAGGACTATGCGGACGCGGCGGTGTCTGCGGCGAGGAAGGCGAACC
CTCTCCCCAGCGGCCTGAGCCTTGCCCCGATCTTGCGGTGGAAACGACGG
GAGAGGCAGCGGCAGGATAGCAGCTCGGTACGCAAGGGTTGAGAAAGGAG
TTGCGTTAATTTCCAGGCACTCCGTGACCCCGATGGGATTGCTTACTATG
TATGTCGGGTTATCCTACCATATGACCTTCTGTTTCTGGTTTTGTTTCGT
CAACACTCTGTATTCAACACGCCCAGCACGGACACACCGCCGTTCGTTTC
AAAAATGCACATGGATTTTAAACTGATATCGGGGGTACAAAGTAGCGTCG
TCTCCCTCTTTGCCTTGGGTGTGTAATAAATAGCACCTGGGTGTCATTTG
CCCAAGCCTTGCCGCGAAATTGAGTCCCTACTCTTCAGGGTTTTCATTGA
TCATCCTCGCTCTTGGTCTTTCCACCTCCCCGACCACCGTGACCAAACAA
AGGAACACATCATCGATACGCAGTATGTATGTAGCCTGCCGTCGCCCTGC
GTACTCCCCGAACCAAAATTCGTGGTGAAGTTAAATCGAATTCCAGTGCA
AAGAGCATGAAAACACGCATCACACAAAAATGGGAACGCAACTCGACTGC
TACTACATACTACGGTGTTTACATACATCTACGATCCTAACACCAACCCA
CCCACCCATCCGGATGAACCCCGCTCGCCCGCGGTGGCTTCCCTCCCTGA
TCCGATTTTTTCTAAAAAGAAAAAGTTTAAGTGCAAGACCCTTGTGGTGG
GGTTCGAGGGCGGCGGGGCTTCCTTCGCCCAGAAATGCTTCGGCCTCGCC
GAAGACGCCGACTGGATCGGCACCGTCGTCTTGCCGGGGGCGCCATCTTC
TCGCAGCACGGACGCGACGTCGACGACCGGGGGTCTTGGCGACTCCCTCA
ATCCCGCAGACCCCCTCAACTCGGCGTGCAACATATTCCTGAAGAGAGTA
GGGGAGGGGAGCGGCGGGGCCGACAACAACAGCGGGGGCGACAATAGTAG
TGGCAACGACGAGCGAAGCAGCAGCGACGGCGGTGGCGGCGGCGGCACCG
TCGAAACCACCGGCGGGGGTGGGGGCGGAGACTCCAGCACCCCGTCCCCA
AACCCCGACGCCACTGACAGCAATAGAGAGGATGGCGGTGTTGCGGTCGC
GCTTTGTGGTTACCGCGTGCCCCCCCGCCAGGCCGGCGCCTGGGCGAAGG
CTCTGCTCGGCGCCATCGACGCCGAGGTGGTGGTGGTACTCGCCACGGTA
GCGGCCGAGCCCGGGCGGAGCGAGGGCTGGCCGGGAGCGCGGCTGGTGGC
TACGGCGGAGGCGGAGGAGAGGGAGGACTGCTTGAAGGTGATCGAGCAGG
GCTGCCACTTTTTTGTTGTTGTTGTTGCCCTTGTTGTTCCACACTGGAGG
CGTGTTTTGTGTTCATATCCTTGTGTATATCTGGACTATGTAGAGTACGC
AGAGGCCGAGTTCGACGCACTGTTGTGGTGGGTTGGCTCTCTTTGGCTCT
TCGTTTCTCGGTCTTGAGACGAAGAGGGCGCCCACAGTATAAAGGTATTT
ACTTAGTTCGTGCCGAGAAGGTGTGCACGGTGTTGATCTGCGAGACGGCT
GTATGGAAGGGTTGCGGATGTATCTCTTGGTCACGGGCGCTGGCCACGTT
GAGGCAAGACTGCGCTAGGAAAAAGCGGAGGTGCCCCTTCCCCCCCCCAG
TCGCGATCAAAGCGTAGCTTTGACCTCTCGAAAGTTGGCGTTCTTAGCCA
ACTTGCACAGTAGTGAGGTAGCCTTTGAACGGAATGTTACTTTCGAGGTG
AAGCCACCTGGTTTTTGGAACCACACCGTCGTGAGTCTCTCGTATGAAAG
CCACCCCGAGCAGCAGAGGGATAGAGGGTCTCTCGGTGCATTGGATCTGG
GGTCTGTTACTTGGCAATAACGTTTCGGGAACGGCGAGCAGCAGTAGCTC
TCTTGTTGGGCCGATCTCGTTGCTGTTCGCGGTGCGTTGACCAGGAGCTT
GTTTCCCCACACCCCAGTCAACCTGCTTACGTACGATCCCGTTTGGTCTC
GAGTGTTACATATTGTGAGGGCTTGATGGCGCTTGCCGAGCAAAACGCCG
TGCTCTTTTTCCTCGCTGTCTCATATCGCAGCCCCCTGGCATGGTTGTCC
GCCTCTCGTCTCGCCTCCTTTTTCTGCGTGGTTGCAGATGTCCGAGGGTT
TCCAGCCCCTCCGGACGCCGACGATGCTAAGCGGAGCCCCGGCGGCGCTG
GTGTCCTACTGCCAGAGGCACGGCCGAGCCGCCATGTGCTTCGCCGCGGC
GGAGCTTCCCGGGAGAAGGGCGGTGCCTCCGCAGCAGCCACAGCAGCAGC
AGGCCGGCGGCGAGGGTGGTAGCAGTGGCGGCAGCTTGCTTTTCGCCGAG
AGAAGTCTGTCCTGCACGCGGAAGCCGATCGGGGTGGTTGCGGGAGAGGC
GATGGTGTCCGGCGGTGGTGGGGGGGTTGAAGGGGTGGACAAGCAGGTCG
ACGCTGTTGATAGCGCAACAAGTAGCTTGTATATTTGAGCTCCGAGTGGA
AAGCGGGGGTTGGGAAAGCAGGACGCGGCTTCAGGCATCGAATGCCCCCC
CATAGTTCGACTTCCAACCTTCGCGTAGGAGACGATAGGGCAAAGGGGTC
TCGAGGTGGAGCAGGGGTGCGCCGACAGTGTATAAGTCGTGTTTCCTTAT
GTTGAAGCGAGATGTAGTTCAACATGACGATGCGAAGCATTTGTTGCTAC
AAAATACAATTCCAAGGCCGTGGGCGTTTTGCCGCGGTAAAGTTTTCCCC
ACATCTATTCTCGAATTGATCCGTTCTGCGGGGAAACAAAGGGAACTATT
GCCGTTTGGAATGAACATTCCCCTCGCCTTTAAAGGCTTCCACAATACGA
GGTCCCCGAACGCTACAGGGTTGATTTGCATACGGGATGTGGAACAGCCG
TTCAATATGACCAGGTGAAGAGAGAGACGTTTTCGTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10415:2244..5530+

>mRNA_L-elsbetiae_contig10415.421.1 ID=mRNA_L-elsbetiae_contig10415.421.1|Name=mRNA_L-elsbetiae_contig10415.421.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2286bp|location=Sequence derived from alignment at L-elsbetiae_contig10415:2244..5530+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATCGCGGCCACGCGGTATCCGGCCTTCTCCAGAAACTTTGAAGACGA
GCAGGACTATGCGGACGCGGCGGTGTCTGCGGCGAGGAAGGCGAACCCTC
TCCCCAGCGGCCTGAGCCTTGCCCCGATCTTGCGGTGGAAACGACGGGAG
AGGCAGCGGCAGGATAGCAGCTCGATGATCGCGGCCACGCGGTATCCGGC
CTTCTCCAGAAACTTTGAAGACGAGCAGGACTATGCGGACGCGGCGGTGT
CTGCGGCGAGGAAGGCGAACCCTCTCCCCAGCGGCCTGAGCCTTGCCCCG
ATCTTGCGGTGGAAACGACGGGAGAGGCAGCGGCAGGATAGCAGCTCGAA
AAAGTTTAAGTGCAAGACCCTTGTGGTGGGGTTCGAGGGCGGCGGGGCTT
CCTTCGCCCAGAAATGCTTCGGCCTCGCCGAAGACGCCGACTGGATCGGC
ACCGTCGTCTTGCCGGGGGCGCCATCTTCTCGCAGCACGGACGCGACGTC
GACGACCGGGGGTCTTGGCGACTCCCTCAATCCCGCAGACCCCCTCAACT
CGGCGTGCAACATATTCCTGAAGAGAGTAGGGGAGGGGAGCGGCGGGGCC
GACAACAACAGCGGGGGCGACAATAGTAGTGGCAACGACGAGCGAAGCAG
CAGCGACGGCGGTGGCGGCGGCGGCACCGTCGAAACCACCGGCGGGGGTG
GGGGCGGAGACTCCAGCACCCCGTCCCCAAACCCCGACGCCACTGACAGC
AATAGAGAGGATGGCGGTGTTGCGGTCGCGCTTTGTGGTTACCGCGTGCC
CCCCCGCCAGGCCGGCGCCTGGGCGAAGGCTCTGCTCGGCGCCATCGACG
CCGAGGTGGTGGTGGTACTCGCCACGGTAGCGGCCGAGCCCGGGCGGAGC
GAGGGCTGGCCGGGAGCGCGGCTGGTGGCTACGGCGGAGGCGGAGGAGAG
GGAGGACTGCTTGAAGAAAAAGTTTAAGTGCAAGACCCTTGTGGTGGGGT
TCGAGGGCGGCGGGGCTTCCTTCGCCCAGAAATGCTTCGGCCTCGCCGAA
GACGCCGACTGGATCGGCACCGTCGTCTTGCCGGGGGCGCCATCTTCTCG
CAGCACGGACGCGACGTCGACGACCGGGGGTCTTGGCGACTCCCTCAATC
CCGCAGACCCCCTCAACTCGGCGTGCAACATATTCCTGAAGAGAGTAGGG
GAGGGGAGCGGCGGGGCCGACAACAACAGCGGGGGCGACAATAGTAGTGG
CAACGACGAGCGAAGCAGCAGCGACGGCGGTGGCGGCGGCGGCACCGTCG
AAACCACCGGCGGGGGTGGGGGCGGAGACTCCAGCACCCCGTCCCCAAAC
CCCGACGCCACTGACAGCAATAGAGAGGATGGCGGTGTTGCGGTCGCGCT
TTGTGGTTACCGCGTGCCCCCCCGCCAGGCCGGCGCCTGGGCGAAGGCTC
TGCTCGGCGCCATCGACGCCGAGGTGGTGGTGGTACTCGCCACGGTAGCG
GCCGAGCCCGGGCGGAGCGAGGGCTGGCCGGGAGCGCGGCTGGTGGCTAC
GGCGGAGGCGGAGGAGAGGGAGGACTGCTTGAAGATGTCCGAGGGTTTCC
AGCCCCTCCGGACGCCGACGATGCTAAGCGGAGCCCCGGCGGCGCTGGTG
TCCTACTGCCAGAGGCACGGCCGAGCCGCCATGTGCTTCGCCGCGGCGGA
GCTTCCCGGGAGAAGGGCGGTGCCTCCGCAGCAGCCACAGCAGCAGCAGG
CCGGCGGCGAGGGTGGTAGCAGTGGCGGCAGCTTGCTTTTCGCCGAGAGA
AGTCTGTCCTGCACGCGGAAGCCGATCGGGGTGGTTGCGGGAGAGGCGAT
GGTGTCCGGCGGTGGTGGGGGGGTTGAAGGGGTGGACAAGCAGGTCGACG
CTGTTGATAGCGCAACAAGTAGCTTGTATATTTGAATGTCCGAGGGTTTC
CAGCCCCTCCGGACGCCGACGATGCTAAGCGGAGCCCCGGCGGCGCTGGT
GTCCTACTGCCAGAGGCACGGCCGAGCCGCCATGTGCTTCGCCGCGGCGG
AGCTTCCCGGGAGAAGGGCGGTGCCTCCGCAGCAGCCACAGCAGCAGCAG
GCCGGCGGCGAGGGTGGTAGCAGTGGCGGCAGCTTGCTTTTCGCCGAGAG
AAGTCTGTCCTGCACGCGGAAGCCGATCGGGGTGGTTGCGGGAGAGGCGA
TGGTGTCCGGCGGTGGTGGGGGGGTTGAAGGGGTGGACAAGCAGGTCGAC
GCTGTTGATAGCGCAACAAGTAGCTTGTATATTTGA
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