mRNA_L-elsbetiae_contig16128.4208.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16128.4208.1
Unique NamemRNA_L-elsbetiae_contig16128.4208.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16128.4208.1 vs. uniprot
Match: A0A6H5KAA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAA0_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.800e-7
Identity = 62/174 (35.63%), Postives = 79/174 (45.40%), Query Frame = 2 
Query:  905 LHQTIGELEAYVALEASKRLEAECRAQNLEAGLQVLADRCDLEIAARETAESAAKRYMDLIAEARAAWQRTQDIVQNKERELA------------------------------------------AAETRXXXXXXXXXXXXXDPASLQRRLEDARKDKEMDRQHAASLKLALE 1300
            L   I +LE     +ASK  EAE RA++LE  L+ LADRC LE AARE AE  A+R M + AEAR A +  + + + K+RELA                                          AAE R                SLQRRL DAR+ +E++RQ +   KLALE
Sbjct:  604 LRARIEQLEVSAQTQASKHGEAERRAESLEGELRGLADRCRLETAAREAAERDAQRCMGMFAEARVARKDARVVAEGKDRELASEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAEARMMKTEAGGGF-----CSLQRRLGDARRGRELNRQQSLEFKLALE 772
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16128.4208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KAA0_9PHAE1.800e-735.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16128contigL-elsbetiae_contig16128:708..2766 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2040
Cds size1503
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16128.4208.1prot_L-elsbetiae_contig16128.4208.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16128 1064..2585 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815665.9386811-UTR-L-elsbetiae_contig16128:707..10631622815665.9386811-UTR-L-elsbetiae_contig16128:707..1063Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16128 708..1063 -
1691683024.6383321-UTR-L-elsbetiae_contig16128:707..10631691683024.6383321-UTR-L-elsbetiae_contig16128:707..1063Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16128 708..1063 -
1622815665.9807925-UTR-L-elsbetiae_contig16128:2585..27661622815665.9807925-UTR-L-elsbetiae_contig16128:2585..2766Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16128 2586..2766 -
1691683024.672284-UTR-L-elsbetiae_contig16128:2585..27661691683024.672284-UTR-L-elsbetiae_contig16128:2585..2766Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16128 2586..2766 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815665.952244-CDS-L-elsbetiae_contig16128:1063..11631622815665.952244-CDS-L-elsbetiae_contig16128:1063..1163Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16128 1064..1163 -
1691683024.6531785-CDS-L-elsbetiae_contig16128:1063..11631691683024.6531785-CDS-L-elsbetiae_contig16128:1063..1163Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16128 1064..1163 -
1622815665.967159-CDS-L-elsbetiae_contig16128:1182..25851622815665.967159-CDS-L-elsbetiae_contig16128:1182..2585Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16128 1183..2585 -
1691683024.662143-CDS-L-elsbetiae_contig16128:1182..25851691683024.662143-CDS-L-elsbetiae_contig16128:1182..2585Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16128 1183..2585 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16128.4208.1

>prot_L-elsbetiae_contig16128.4208.1 ID=prot_L-elsbetiae_contig16128.4208.1|Name=mRNA_L-elsbetiae_contig16128.4208.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=501bp
MVNKGQQPLKVGIMVQERQGGLQQGAGHRFGGGGWGGSQERDVGTPPLAV
KPPRRLGDPETLESRGGSGWVDRNSDCRAAAVAASAFQATDHGGRLGSGS
GGGSSSGSNSGSGGGSGGSGGGGGAADTLVSHDSDAELDRLWDRFNSLKG
ELPATSNMPPPPPAEHGCSGSGSGARRAGPAGGGGGGADEDATALKPFRE
REQEREAWAHRRDVAGKLEDIQRALAAKADDGRRRQDELEGLHQTIGELE
AYVALEASKRLEAECRAQNLEAGLQVLADRCDLEIAARETAESAAKRYMD
LIAEARAAWQRTQDIVQNKERELAAAETREERAAGGGGGGGGDPASLQRR
LEDARKDKEMDRQHAASLKLALERGSVSSSPGSAAAVTPVTLEPSLKAGR
RRSAGCVANVRARPERRASGTTKALPASRRQSLDDGRVAAAEVRLQVAID
QAAAAAATSNKTRDTSSPGSSSSSSSSSAATPVRPFPDPASSRRPRTGRS
*
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mRNA from alignment at L-elsbetiae_contig16128:708..2766-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16128.4208.1 ID=mRNA_L-elsbetiae_contig16128.4208.1|Name=mRNA_L-elsbetiae_contig16128.4208.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2059bp|location=Sequence derived from alignment at L-elsbetiae_contig16128:708..2766- (Laminarionema elsbetiae ELsaHSoW15)
GGCGAGCAGACGCTGACGAAGGCGCAAGGTGTCTCTCTCCTCCCTCCCCC
CGCCCGTGCAGCAGCGGGGCCGGATCATCCGCGCTACTTGTCGGCCGCAA
GCCCCCGCACCTCGCTGCTGATCCGGACAGACGGGCGGACGGGGCCCCCT
GGTCCCGATCTGCCTCGCGGCGCCGCAAGACATGGTGAACAAGGGGCAGC
AGCCGCTTAAGGTGGGGATCATGGTGCAGGAGAGGCAGGGGGGCCTGCAG
CAAGGAGCGGGCCACCGGTTCGGCGGAGGCGGTTGGGGGGGTAGCCAGGA
GCGAGACGTTGGCACGCCGCCCCTCGCCGTGAAACCTCCGCGGCGGCTGG
GCGACCCCGAAACGCTCGAGAGCCGTGGCGGCAGCGGCTGGGTCGACCGC
AACAGCGATTGCCGAGCCGCGGCTGTGGCCGCTTCGGCTTTTCAGGCCAC
CGACCACGGAGGCCGACTCGGCAGCGGCAGCGGGGGCGGCAGCAGCAGTG
GCAGCAACAGTGGCAGCGGGGGCGGTAGCGGCGGCAGCGGGGGCGGCGGC
GGCGCCGCCGACACCCTCGTTTCTCACGACTCTGACGCCGAGCTCGACCG
CCTGTGGGACAGGTTCAACTCCCTGAAGGGGGAGCTCCCGGCCACTTCGA
ACATGCCGCCGCCTCCCCCCGCGGAACACGGCTGCAGCGGCTCAGGGAGC
GGGGCTCGACGAGCAGGGCCGGCTGGTGGCGGCGGCGGTGGCGCGGACGA
AGACGCCACCGCGCTGAAGCCGTTCCGCGAGCGGGAGCAGGAGCGCGAGG
CGTGGGCGCACCGGCGGGACGTGGCCGGCAAGCTGGAGGACATCCAGCGG
GCCCTCGCCGCGAAGGCCGACGACGGGAGGCGGAGGCAGGACGAGCTGGA
GGGGCTCCACCAGACGATCGGGGAGCTGGAGGCGTACGTCGCGCTGGAGG
CCTCCAAGCGCCTAGAGGCCGAGTGCCGCGCGCAGAACCTGGAGGCCGGG
CTGCAGGTCCTGGCGGACCGGTGCGACCTGGAGATTGCCGCGCGCGAGAC
GGCCGAGTCCGCCGCGAAGCGCTACATGGACCTGATCGCCGAGGCCCGGG
CAGCGTGGCAGAGGACCCAGGACATCGTGCAGAACAAGGAGAGGGAGCTG
GCCGCCGCCGAGACTAGGGAGGAGCGGGCGGCCGGCGGCGGAGGAGGGGG
GGGGGGGGACCCGGCTTCTCTGCAGCGACGGCTCGAGGACGCCAGGAAGG
ACAAGGAGATGGACCGGCAGCACGCGGCCTCGCTTAAGCTGGCCCTGGAA
AGAGGGAGCGTGTCGTCTTCCCCCGGTTCTGCCGCCGCCGTTACCCCCGT
TACGCTCGAGCCGTCTCTCAAGGCCGGGCGCAGACGCAGTGCTGGTTGCG
TCGCCAACGTCCGGGCGCGCCCCGAGCGACGAGCATCGGGGACGACGAAG
GCTTTGCCAGCCTCCCGGCGCCAGAGCCTTGACGACGGCCGAGTGGCGGC
GGCGGAGGTGCGGTTGCAGGTCGCGATCGACCAGGCGGCGGCTGCCGCAG
CTACGTCCAACAAAACAAGAGATACATCATCGCCGCCAAGGCGGCGGCGG
CAGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGCGGCAACCCCGGTAA
GACCGTTCCCCGACCCCGCATCGTCCCGTCGACCAAGGACAGGCCGGAGC
TAGGCGGTGGCGACGTTTACTGCGGCGTCGGGGGCGCGTACAACGTGGCG
ACCTCCAGCATCAACGACTCCAGTCGCAGCGGCCCTTGCACCTACAGCGG
GACGGCGCCGAACCACGACAGATTCCCCAAAGAGGCGTGCTTGGTAAACG
ATTACTTCGCCGCCGGCGACGAGCGCTCCTCGGGCGAGAACGAGCGATGC
AGCGAATCCAGGGCTTACAGAGACGACGATGAGAAGGGTGCCAATCGGCG
CCTGGGTGTTTGCCGGGAGACCATGGTCAAGCTGAAGGGGACGGTAGGGT
CGGCGGTGGTAAAGGCGATGAACGATGGAGGGAAGAACATGAAGGTCCAC
GACAGCAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16128:708..2766-

>mRNA_L-elsbetiae_contig16128.4208.1 ID=mRNA_L-elsbetiae_contig16128.4208.1|Name=mRNA_L-elsbetiae_contig16128.4208.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3006bp|location=Sequence derived from alignment at L-elsbetiae_contig16128:708..2766- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGAACAAGGGGCAGCAGCCGCTTAAGGTGGGGATCATGGTGCAGGA
GAGGCAGGGGGGCCTGCAGCAAGGAGCGGGCCACCGGTTCGGCGGAGGCG
GTTGGGGGGGTAGCCAGGAGCGAGACGTTGGCACGCCGCCCCTCGCCGTG
AAACCTCCGCGGCGGCTGGGCGACCCCGAAACGCTCGAGAGCCGTGGCGG
CAGCGGCTGGGTCGACCGCAACAGCGATTGCCGAGCCGCGGCTGTGGCCG
CTTCGGCTTTTCAGGCCACCGACCACGGAGGCCGACTCGGCAGCGGCAGC
GGGGGCGGCAGCAGCAGTGGCAGCAACAGTGGCAGCGGGGGCGGTAGCGG
CGGCAGCGGGGGCGGCGGCGGCGCCGCCGACACCCTCGTTTCTCACGACT
CTGACGCCGAGCTCGACCGCCTGTGGGACAGGTTCAACTCCCTGAAGGGG
GAGCTCCCGGCCACTTCGAACATGCCGCCGCCTCCCCCCGCGGAACACGG
CTGCAGCGGCTCAGGGAGCGGGGCTCGACGAGCAGGGCCGGCTGGTGGCG
GCGGCGGTGGCGCGGACGAAGACGCCACCGCGCTGAAGCCGTTCCGCGAG
CGGGAGCAGGAGCGCGAGGCGTGGGCGCACCGGCGGGACGTGGCCGGCAA
GCTGGAGGACATCCAGCGGGCCCTCGCCGCGAAGGCCGACGACGGGAGGC
GGAGGCAGGACGAGCTGGAGGGGCTCCACCAGACGATCGGGGAGCTGGAG
GCGTACGTCGCGCTGGAGGCCTCCAAGCGCCTAGAGGCCGAGTGCCGCGC
GCAGAACCTGGAGGCCGGGCTGCAGGTCCTGGCGGACCGGTGCGACCTGG
AGATTGCCGCGCGCGAGACGGCCGAGTCCGCCGCGAAGCGCTACATGGAC
CTGATCGCCGAGGCCCGGGCAGCGTGGCAGAGGACCCAGGACATCGTGCA
GAACAAGGAGAGGGAGCTGGCCGCCGCCGAGACTAGGGAGGAGCGGGCGG
CCGGCGGCGGAGGAGGGGGGGGGGGGGACCCGGCTTCTCTGCAGCGACGG
CTCGAGGACGCCAGGAAGGACAAGGAGATGGACCGGCAGCACGCGGCCTC
GCTTAAGCTGGCCCTGGAAAGAGGGAGCGTGTCGTCTTCCCCCGGTTCTG
CCGCCGCCGTTACCCCCGTTACGCTCGAGCCGTCTCTCAAGGCCGGGCGC
AGACGCAGTGCTGGTTGCGTCGCCAACGTCCGGGCGCGCCCCGAGCGACG
AGCATCGGGGACGACGAAGGCTTTGCCAGCCTCCCGGCGCCAGAGCCTTG
ACGACGGCCGAGTGGCGGCGGCGGAGGTGCGGTTGCAGGTCGCGATCGAC
CAGGCGGCGGCTGCCGCAGCTACGTCCAACAAAACAAGAGATACATCATC
GCCATGGTGAACAAGGGGCAGCAGCCGCTTAAGGTGGGGATCATGGTGCA
GGAGAGGCAGGGGGGCCTGCAGCAAGGAGCGGGCCACCGGTTCGGCGGAG
GCGGTTGGGGGGGTAGCCAGGAGCGAGACGTTGGCACGCCGCCCCTCGCC
GTGAAACCTCCGCGGCGGCTGGGCGACCCCGAAACGCTCGAGAGCCGTGG
CGGCAGCGGCTGGGTCGACCGCAACAGCGATTGCCGAGCCGCGGCTGTGG
CCGCTTCGGCTTTTCAGGCCACCGACCACGGAGGCCGACTCGGCAGCGGC
AGCGGGGGCGGCAGCAGCAGTGGCAGCAACAGTGGCAGCGGGGGCGGTAG
CGGCGGCAGCGGGGGCGGCGGCGGCGCCGCCGACACCCTCGTTTCTCACG
ACTCTGACGCCGAGCTCGACCGCCTGTGGGACAGGTTCAACTCCCTGAAG
GGGGAGCTCCCGGCCACTTCGAACATGCCGCCGCCTCCCCCCGCGGAACA
CGGCTGCAGCGGCTCAGGGAGCGGGGCTCGACGAGCAGGGCCGGCTGGTG
GCGGCGGCGGTGGCGCGGACGAAGACGCCACCGCGCTGAAGCCGTTCCGC
GAGCGGGAGCAGGAGCGCGAGGCGTGGGCGCACCGGCGGGACGTGGCCGG
CAAGCTGGAGGACATCCAGCGGGCCCTCGCCGCGAAGGCCGACGACGGGA
GGCGGAGGCAGGACGAGCTGGAGGGGCTCCACCAGACGATCGGGGAGCTG
GAGGCGTACGTCGCGCTGGAGGCCTCCAAGCGCCTAGAGGCCGAGTGCCG
CGCGCAGAACCTGGAGGCCGGGCTGCAGGTCCTGGCGGACCGGTGCGACC
TGGAGATTGCCGCGCGCGAGACGGCCGAGTCCGCCGCGAAGCGCTACATG
GACCTGATCGCCGAGGCCCGGGCAGCGTGGCAGAGGACCCAGGACATCGT
GCAGAACAAGGAGAGGGAGCTGGCCGCCGCCGAGACTAGGGAGGAGCGGG
CGGCCGGCGGCGGAGGAGGGGGGGGGGGGGACCCGGCTTCTCTGCAGCGA
CGGCTCGAGGACGCCAGGAAGGACAAGGAGATGGACCGGCAGCACGCGGC
CTCGCTTAAGCTGGCCCTGGAAAGAGGGAGCGTGTCGTCTTCCCCCGGTT
CTGCCGCCGCCGTTACCCCCGTTACGCTCGAGCCGTCTCTCAAGGCCGGG
CGCAGACGCAGTGCTGGTTGCGTCGCCAACGTCCGGGCGCGCCCCGAGCG
ACGAGCATCGGGGACGACGAAGGCTTTGCCAGCCTCCCGGCGCCAGAGCC
TTGACGACGGCCGAGTGGCGGCGGCGGAGGTGCGGTTGCAGGTCGCGATC
GACCAGGCGGCGGCTGCCGCAGCTACGTCCAACAAAACAAGAGATACATC
ATCGCCCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGCGGCAACCCCGG
TAAGACCGTTCCCCGACCCCGCATCGTCCCGTCGACCAAGGACAGGCCGG
AGCTAGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGCGGCAACCCCGG
TAAGACCGTTCCCCGACCCCGCATCGTCCCGTCGACCAAGGACAGGCCGG
AGCTAG
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