mRNA_L-elsbetiae_contig16113.4203.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16113.4203.1
Unique NamemRNA_L-elsbetiae_contig16113.4203.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16113.4203.1 vs. uniprot
Match: D7G6K7_ECTSI (Transient Receptor Potential Channel. C terminally truncated n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6K7_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 8.150e-24
Identity = 57/75 (76.00%), Postives = 59/75 (78.67%), Query Frame = 3 
Query:   81 LGLLCLLVGTIFRCSDW-GPWGPAFYALSAPFLVSRVLFFAQVLSFPEPMIQVIFRMTTTLLKFGFVMVVVMVGF 302
            L LLCL VG + R  DW  PWGPAFYALSAP LV  VLFFAQVL F  PMI+VI RMTTTLLKFGFVMVVVM GF
Sbjct:  478 LALLCLSVGLVIRGVDWTSPWGPAFYALSAPLLVCSVLFFAQVLPFQGPMIKVISRMTTTLLKFGFVMVVVMTGF 552
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BLAST of mRNA_L-elsbetiae_contig16113.4203.1 vs. uniprot
Match: D7FZR6_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR6_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 2.730e-22
Identity = 51/75 (68.00%), Postives = 60/75 (80.00%), Query Frame = 3 
Query:   81 LGLLCLLVGTIFRCSDW-GPWGPAFYALSAPFLVSRVLFFAQVLSFPEPMIQVIFRMTTTLLKFGFVMVVVMVGF 302
            LG+L L VG + R  DW   WGPAFYALSAP +V+RVLFFAQ+L F  PM+QVIFRMT TLL+FG VM+VVM+GF
Sbjct:  815 LGMLFLFVGLVIRWDDWTSTWGPAFYALSAPLVVARVLFFAQILQFQGPMVQVIFRMTATLLQFGAVMLVVMIGF 889
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BLAST of mRNA_L-elsbetiae_contig16113.4203.1 vs. uniprot
Match: A0A6H5KBU4_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU4_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 3.740e-22
Identity = 51/75 (68.00%), Postives = 60/75 (80.00%), Query Frame = 3 
Query:   81 LGLLCLLVGTIFRCSDW-GPWGPAFYALSAPFLVSRVLFFAQVLSFPEPMIQVIFRMTTTLLKFGFVMVVVMVGF 302
            LG+L L VG + R  DW   WGPAFYALSAP +V+RVLFFAQ+L F  PM+QVIFRMT TLL+FG VM+VVM+GF
Sbjct:  832 LGILFLFVGLVIRWDDWTSTWGPAFYALSAPLVVARVLFFAQILQFHGPMVQVIFRMTATLLQFGAVMLVVMIGF 906
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BLAST of mRNA_L-elsbetiae_contig16113.4203.1 vs. uniprot
Match: A0A6H5JG42_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG42_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 8.260e-16
Identity = 49/75 (65.33%), Postives = 52/75 (69.33%), Query Frame = 3 
Query:   81 LGLLCLLVGTIFRCSDWGPW-GPAFYALSAPFLVSRVLFFAQVLSFPEPMIQVIFRMTTTLLKFGFVMVVVMVGF 302
            LGLL   +G I R  DW    GPAFYALSAP LVSR LFF Q+     PM  VIFRMTT LLKFGFVM VVM+GF
Sbjct:  638 LGLLFFTIGFIARVVDWTQQLGPAFYALSAPLLVSRALFFVQIHPLQGPM--VIFRMTTVLLKFGFVMAVVMIGF 710
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BLAST of mRNA_L-elsbetiae_contig16113.4203.1 vs. uniprot
Match: D7FLB1_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB1_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 5.400e-15
Identity = 44/75 (58.67%), Postives = 54/75 (72.00%), Query Frame = 3 
Query:   81 LGLLCLLVGTIFRCSDW-GPWGPAFYALSAPFLVSRVLFFAQVLSFPEPMIQVIFRMTTTLLKFGFVMVVVMVGF 302
            LGL  +  G I RC+D    WG A YALSAP + SR+LFFAQ+L F  PMIQV+F MT  L+KFG V++VVM+GF
Sbjct:  877 LGLGLVTGGLIVRCADGDNSWGRALYALSAPLIFSRLLFFAQMLRFHGPMIQVVFSMTAELVKFGVVIIVVMLGF 951
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BLAST of mRNA_L-elsbetiae_contig16113.4203.1 vs. uniprot
Match: A0A6H5KJG3_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJG3_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 3.090e-13
Identity = 45/86 (52.33%), Postives = 53/86 (61.63%), Query Frame = 3 
Query:   81 LGLLCLLVGTIFRCSDW-GPWGPAFYALSAPFLVSRVLFFAQVLSFPEPMIQ-----------VIFRMTTTLLKFGFVMVVVMVGF 302
            L LL L +G + R  DW    GPAFYAL+AP LVSR LFF Q+     PMIQ           V+FRMT  LLKFGFVM V+++GF
Sbjct:  817 LSLLFLTIGLVGRVVDWKSQLGPAFYALAAPLLVSRALFFVQIHPLQGPMIQASGETKRFPQRVVFRMTRILLKFGFVMAVIVLGF 902
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BLAST of mRNA_L-elsbetiae_contig16113.4203.1 vs. uniprot
Match: A0A6H5JUV2_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUV2_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 2.590e-12
Identity = 45/91 (49.45%), Postives = 53/91 (58.24%), Query Frame = 3 
Query:   81 LGLLCLLVGTIFRCSDW-GPWGPAFYALSAPFLVSRVLFFAQVLSFPEPMIQ----------------VIFRMTTTLLKFGFVMVVVMVGF 302
            L LL L VG + R  DW    GPAFYAL+AP LVSR LFF Q+     P+IQ                V+FRMT  LLKFGFVM V+++GF
Sbjct:   86 LSLLFLTVGLVGRVVDWKSQLGPAFYALAAPLLVSRALFFVQIHPLQGPIIQASGEFRQVAKRNVSHSVVFRMTRILLKFGFVMAVILLGF 176
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16113.4203.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G6K7_ECTSI8.150e-2476.00Transient Receptor Potential Channel. C terminally... [more]
D7FZR6_ECTSI2.730e-2268.00Ankyrin Repeat Transient Receptor Potential Channe... [more]
A0A6H5KBU4_9PHAE3.740e-2268.00Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JG42_9PHAE8.260e-1665.33Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FLB1_ECTSI5.400e-1558.67Ankyrin Repeat Transient Receptor Potential Channe... [more]
A0A6H5KJG3_9PHAE3.090e-1352.33Ion_trans domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JUV2_9PHAE2.590e-1249.45Ion_trans domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16113contigL-elsbetiae_contig16113:3021..3637 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size304
Cds size162
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16113.4203.1prot_L-elsbetiae_contig16113.4203.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16113 3476..3637 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815665.565848-UTR-L-elsbetiae_contig16113:3020..30911622815665.565848-UTR-L-elsbetiae_contig16113:3020..3091Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16113 3021..3091 -
1691683024.4387984-UTR-L-elsbetiae_contig16113:3020..30911691683024.4387984-UTR-L-elsbetiae_contig16113:3020..3091Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16113 3021..3091 -
1622815665.5805743-UTR-L-elsbetiae_contig16113:3404..34751622815665.5805743-UTR-L-elsbetiae_contig16113:3404..3475Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16113 3405..3475 -
1691683024.4493475-UTR-L-elsbetiae_contig16113:3404..34751691683024.4493475-UTR-L-elsbetiae_contig16113:3404..3475Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16113 3405..3475 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815665.5979059-CDS-L-elsbetiae_contig16113:3475..36371622815665.5979059-CDS-L-elsbetiae_contig16113:3475..3637Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16113 3476..3637 -
1691683024.4582877-CDS-L-elsbetiae_contig16113:3475..36371691683024.4582877-CDS-L-elsbetiae_contig16113:3475..3637Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16113 3476..3637 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16113.4203.1

>prot_L-elsbetiae_contig16113.4203.1 ID=prot_L-elsbetiae_contig16113.4203.1|Name=mRNA_L-elsbetiae_contig16113.4203.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=54bp
AGVFREGRELWRDVRSYFKDQWNVLTTLACCACSSARSSDAVIGVLGGPH
STP*
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mRNA from alignment at L-elsbetiae_contig16113:3021..3637-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16113.4203.1 ID=mRNA_L-elsbetiae_contig16113.4203.1|Name=mRNA_L-elsbetiae_contig16113.4203.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=617bp|location=Sequence derived from alignment at L-elsbetiae_contig16113:3021..3637- (Laminarionema elsbetiae ELsaHSoW15)
GCTGGAGTTTTCCGGGAAGGGCGCGAGCTGTGGAGGGACGTTCGCAGCTA
TTTTAAAGACCAGTGGAATGTCCTCACGACCTTGGCCTGTTGTGCCTGCT
CGTCGGCACGATCTTCAGATGCAGTGATTGGGGTCCTTGGGGGCCCGCAT
TCTACGCCCTGAGTGCCCCCTTCTTGGTTTCCCGCGTCCTCTTCTTCGCC
CAGGTTCTCTCCTTCCCAGAGCCGATGATACAGGCGAGTTTGCCGGAAAA
ATAGTCACGCAGAGAGTGGTCTGAAATCATGCTATAATTTTCACGAATGT
CACAAAGTGATTGGTAAATATCTATAGATATCGTGATGACCGTAGTAGTA
GTAGCATTTTCGCCGTACCAATCGTCAGTCGAACAAGTAAGTCGTCAGTA
CATATGCACGTCTCGGGTTGTGCGCCCCCCAGAGAGGCGTACCCGCATGC
GTCTATTCTCTTTGGTTCTTGCGTGCGCTGCGCCTTTTAATAAACTTCGC
TTCTTTTCAAATGCCAATAGCTTTTTCACTGGTTTTCTTCACGCAGGTCA
TATTTCGCATGACCACGACGCTGCTGAAGTTTGGGTTCGTCATGGTGGTC
GTCATGGTCGGTTTTGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16113:3021..3637-

>mRNA_L-elsbetiae_contig16113.4203.1 ID=mRNA_L-elsbetiae_contig16113.4203.1|Name=mRNA_L-elsbetiae_contig16113.4203.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=324bp|location=Sequence derived from alignment at L-elsbetiae_contig16113:3021..3637- (Laminarionema elsbetiae ELsaHSoW15)
GCTGGAGTTTTCCGGGAAGGGCGCGAGCTGTGGAGGGACGTTCGCAGCTA
TTTTAAAGACCAGTGGAATGTCCTCACGACCTTGGCCTGTTGTGCCTGCT
CGTCGGCACGATCTTCAGATGCAGTGATTGGGGTCCTTGGGGGCCCGCAT
TCTACGCCCTGAGCTGGAGTTTTCCGGGAAGGGCGCGAGCTGTGGAGGGA
CGTTCGCAGCTATTTTAAAGACCAGTGGAATGTCCTCACGACCTTGGCCT
GTTGTGCCTGCTCGTCGGCACGATCTTCAGATGCAGTGATTGGGGTCCTT
GGGGGCCCGCATTCTACGCCCTGA
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