mRNA_L-elsbetiae_contig10.42.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10.42.1
Unique NamemRNA_L-elsbetiae_contig10.42.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10.42.1 vs. uniprot
Match: A0A6I5NDM4_9CYAN (Photosystem I iron-sulfur center n=2 Tax=unclassified Leptolyngbya TaxID=2650499 RepID=A0A6I5NDM4_9CYAN)

HSP 1 Score: 113 bits (282), Expect = 2.060e-29
Identity = 69/71 (97.18%), Postives = 71/71 (100.00%), Query Frame = -3 
Query:  294 CIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXLSIRVYLGGETTRSMGLAY 506
            CIGCTQCVRACPTDVLEMVPWDGCKAGQIA++PRTEDXXXXXXXXXXXXXXXLSIRVYLGGETTRSMGLAY
Sbjct:   39 CIGCTQCVRACPTDVLEMVPWDGCKAGQIAASPRTEDXXXXXXXXXXXXXXXLSIRVYLGGETTRSMGLAY 109
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BLAST of mRNA_L-elsbetiae_contig10.42.1 vs. uniprot
Match: K9XT12_STAC7 (Photosystem I iron-sulfur center n=41 Tax=root TaxID=1 RepID=K9XT12_STAC7)

HSP 1 Score: 111 bits (277), Expect = 5.240e-29
Identity = 69/71 (97.18%), Postives = 70/71 (98.59%), Query Frame = -3 
Query:  294 CIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXLSIRVYLGGETTRSMGLAY 506
            CIGCTQCVRACPTDVLEMVPWDGCKAGQIAS+PRTEDXXXXXXXXXXXXXXXLSIRVYLG ETTRSMGLAY
Sbjct:   11 CIGCTQCVRACPTDVLEMVPWDGCKAGQIASSPRTEDXXXXXXXXXXXXXXXLSIRVYLGPETTRSMGLAY 81
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BLAST of mRNA_L-elsbetiae_contig10.42.1 vs. uniprot
Match: A0A386JLX7_ACEPE (Photosystem I iron-sulfur center n=2 Tax=Eukaryota TaxID=2759 RepID=A0A386JLX7_ACEPE)

HSP 1 Score: 110 bits (276), Expect = 7.630e-29
Identity = 68/71 (95.77%), Postives = 69/71 (97.18%), Query Frame = -3 
Query:  294 CIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXLSIRVYLGGETTRSMGLAY 506
            CIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXX S+RVYLG ETTRSMGLAY
Sbjct:   12 CIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXXSVRVYLGAETTRSMGLAY 82
[Close]
BLAST of mRNA_L-elsbetiae_contig10.42.1 vs. uniprot
Match: A0A088CIH6_9CHLO (Photosystem I iron-sulfur center n=2 Tax=Chlorophyta TaxID=3041 RepID=A0A088CIH6_9CHLO)

HSP 1 Score: 110 bits (276), Expect = 8.560e-29
Identity = 68/71 (95.77%), Postives = 69/71 (97.18%), Query Frame = -3 
Query:  294 CIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXLSIRVYLGGETTRSMGLAY 506
            CIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXX S+RVYLG ETTRSMGLAY
Sbjct:   16 CIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXXSVRVYLGAETTRSMGLAY 86
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BLAST of mRNA_L-elsbetiae_contig10.42.1 vs. uniprot
Match: PSAC_THEVB (Photosystem I iron-sulfur center n=199 Tax=cellular organisms TaxID=131567 RepID=PSAC_THEVB)

HSP 1 Score: 110 bits (274), Expect = 1.490e-28
Identity = 68/71 (95.77%), Postives = 69/71 (97.18%), Query Frame = -3 
Query:  294 CIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXLSIRVYLGGETTRSMGLAY 506
            CIGCTQCVRACPTDVLEMVPWDGCKAGQIAS+PRTEDXXXXXXXXXXXXXXX SIRVYLG ETTRSMGLAY
Sbjct:   11 CIGCTQCVRACPTDVLEMVPWDGCKAGQIASSPRTEDXXXXXXXXXXXXXXXXSIRVYLGAETTRSMGLAY 81
[Close]
BLAST of mRNA_L-elsbetiae_contig10.42.1 vs. uniprot
Match: M1KFN6_DIALT (Photosystem I iron-sulfur center n=4 Tax=Eukaryota TaxID=2759 RepID=M1KFN6_DIALT)

HSP 1 Score: 108 bits (270), Expect = 6.010e-28
Identity = 67/71 (94.37%), Postives = 69/71 (97.18%), Query Frame = -3 
Query:  294 CIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXLSIRVYLGGETTRSMGLAY 506
            CIGCTQCVRACP DVLEMV WDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXLS+RVYLGGETTRS+GLAY
Sbjct:   11 CIGCTQCVRACPCDVLEMVKWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXLSVRVYLGGETTRSLGLAY 81
[Close]
BLAST of mRNA_L-elsbetiae_contig10.42.1 vs. uniprot
Match: M1X443_9NOST (Photosystem I iron-sulfur center n=9 Tax=cellular organisms TaxID=131567 RepID=M1X443_9NOST)

HSP 1 Score: 108 bits (269), Expect = 8.510e-28
Identity = 66/71 (92.96%), Postives = 69/71 (97.18%), Query Frame = -3 
Query:  294 CIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXLSIRVYLGGETTRSMGLAY 506
            CIGCTQCVRACPTDVLEMVPWDGCKAGQ+A++PRTEDXXXXXXXXXXXXXXX SIRVYLG ETTRSMGLAY
Sbjct:   11 CIGCTQCVRACPTDVLEMVPWDGCKAGQLAASPRTEDXXXXXXXXXXXXXXXXSIRVYLGAETTRSMGLAY 81
[Close]
BLAST of mRNA_L-elsbetiae_contig10.42.1 vs. uniprot
Match: A0A6B3LYA2_9CYAN (Photosystem I iron-sulfur center n=2 Tax=Oscillatoriales TaxID=1150 RepID=A0A6B3LYA2_9CYAN)

HSP 1 Score: 108 bits (269), Expect = 8.510e-28
Identity = 66/71 (92.96%), Postives = 69/71 (97.18%), Query Frame = -3 
Query:  294 CIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXLSIRVYLGGETTRSMGLAY 506
            CIGCTQCVRACP DVLEMVPWDGCKA QIAS+PRT+DXXXXXXXXXXXXXXXLS+RVYLGGETTRSMGLAY
Sbjct:   11 CIGCTQCVRACPLDVLEMVPWDGCKAAQIASSPRTQDXXXXXXXXXXXXXXXLSVRVYLGGETTRSMGLAY 81
[Close]
BLAST of mRNA_L-elsbetiae_contig10.42.1 vs. uniprot
Match: A0A097KM99_9CHLO (Photosystem I iron-sulfur center n=6 Tax=Chlorophyta TaxID=3041 RepID=A0A097KM99_9CHLO)

HSP 1 Score: 108 bits (270), Expect = 1.130e-27
Identity = 67/71 (94.37%), Postives = 68/71 (95.77%), Query Frame = -3 
Query:  294 CIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXLSIRVYLGGETTRSMGLAY 506
            CIGCTQCVRACPTDVLEMVPWDGCKA QIASAPRTEDXXXXXXXXXXXXXXX S+RVYLG ETTRSMGLAY
Sbjct:   33 CIGCTQCVRACPTDVLEMVPWDGCKANQIASAPRTEDXXXXXXXXXXXXXXXXSVRVYLGSETTRSMGLAY 103
[Close]
BLAST of mRNA_L-elsbetiae_contig10.42.1 vs. uniprot
Match: PSAC_SYNP2 (Photosystem I iron-sulfur center n=424 Tax=root TaxID=1 RepID=PSAC_SYNP2)

HSP 1 Score: 107 bits (268), Expect = 1.210e-27
Identity = 67/71 (94.37%), Postives = 68/71 (95.77%), Query Frame = -3 
Query:  294 CIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXLSIRVYLGGETTRSMGLAY 506
            CIGCTQCVRACP DVLEMVPWDGCKAGQIAS+PRTEDXXXXXXXXXXXXXXX SIRVYLG ETTRSMGLAY
Sbjct:   11 CIGCTQCVRACPLDVLEMVPWDGCKAGQIASSPRTEDXXXXXXXXXXXXXXXXSIRVYLGAETTRSMGLAY 81
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10.42.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6I5NDM4_9CYAN2.060e-2997.18Photosystem I iron-sulfur center n=2 Tax=unclassif... [more]
K9XT12_STAC75.240e-2997.18Photosystem I iron-sulfur center n=41 Tax=root Tax... [more]
A0A386JLX7_ACEPE7.630e-2995.77Photosystem I iron-sulfur center n=2 Tax=Eukaryota... [more]
A0A088CIH6_9CHLO8.560e-2995.77Photosystem I iron-sulfur center n=2 Tax=Chlorophy... [more]
PSAC_THEVB1.490e-2895.77Photosystem I iron-sulfur center n=199 Tax=cellula... [more]
M1KFN6_DIALT6.010e-2894.37Photosystem I iron-sulfur center n=4 Tax=Eukaryota... [more]
M1X443_9NOST8.510e-2892.96Photosystem I iron-sulfur center n=9 Tax=cellular ... [more]
A0A6B3LYA2_9CYAN8.510e-2892.96Photosystem I iron-sulfur center n=2 Tax=Oscillato... [more]
A0A097KM99_9CHLO1.130e-2794.37Photosystem I iron-sulfur center n=6 Tax=Chlorophy... [more]
PSAC_SYNP21.210e-2794.37Photosystem I iron-sulfur center n=424 Tax=root Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10contigL-elsbetiae_contig10:77169..77676 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size508
Cds size177
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10.42.1prot_L-elsbetiae_contig10.42.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10 77464..77640 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815233.2901816-UTR-L-elsbetiae_contig10:77168..774631622815233.2901816-UTR-L-elsbetiae_contig10:77168..77463Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10 77169..77463 +
1691682784.5585828-UTR-L-elsbetiae_contig10:77168..774631691682784.5585828-UTR-L-elsbetiae_contig10:77168..77463Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10 77169..77463 +
1622815233.3122559-UTR-L-elsbetiae_contig10:77640..776761622815233.3122559-UTR-L-elsbetiae_contig10:77640..77676Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10 77641..77676 +
1691682784.5750334-UTR-L-elsbetiae_contig10:77640..776761691682784.5750334-UTR-L-elsbetiae_contig10:77640..77676Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10 77641..77676 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815233.299489-CDS-L-elsbetiae_contig10:77463..776401622815233.299489-CDS-L-elsbetiae_contig10:77463..77640Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10 77464..77640 +
1691682784.5671961-CDS-L-elsbetiae_contig10:77463..776401691682784.5671961-CDS-L-elsbetiae_contig10:77463..77640Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10 77464..77640 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10.42.1

>prot_L-elsbetiae_contig10.42.1 ID=prot_L-elsbetiae_contig10.42.1|Name=mRNA_L-elsbetiae_contig10.42.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=59bp
MLIPYYVSFHHLNRHEYLKSQLGKQSHSAYSRHNLRYEELKQFAQPYTHP
MEPFLVHQ*
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mRNA from alignment at L-elsbetiae_contig10:77169..77676+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10.42.1 ID=mRNA_L-elsbetiae_contig10.42.1|Name=mRNA_L-elsbetiae_contig10.42.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=508bp|location=Sequence derived from alignment at L-elsbetiae_contig10:77169..77676+ (Laminarionema elsbetiae ELsaHSoW15)
ACCACGTGTATATAGTTTATTATATTTTATTCTAATACGTTTCCATTTTG
TGGTTATGATAGTAAACTTGTTTAACCTAGACAATTAGTAATAGCGTACT
TTAAATTTAGATTTCTAAATAACTTTTCCTATACAAAATTATTGATTGGG
TCACCTGGGACTTGAACCCAGAACTTTTCGGTTAAAAGCCGATTACTCTA
CCATTGAGTTAGCAACCCTTTCCTATCTTTATAGTAACATACCAGCAAAG
CGTGGTTTATAGATAAACTATGCTTTGCTGCTACGTTAAATTAGTATGCT
AATCCCATACTACGTGTCGTTTCACCACCTAAATAGACACGAATACTTAA
AAAGTCAGTTGGGCAAGCAGTCTCACAGCGCTTACAGCCGACACAATCTT
CGGTACGAGGAGCTGAAGCAATTTGCCCAGCCTTACACCCATCCCATGGA
ACCATTTCTAGTACATCAGTAGGGCAAGCTCTTACACACTGTGTACAACC
AATACAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10:77169..77676+

>mRNA_L-elsbetiae_contig10.42.1 ID=mRNA_L-elsbetiae_contig10.42.1|Name=mRNA_L-elsbetiae_contig10.42.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=354bp|location=Sequence derived from alignment at L-elsbetiae_contig10:77169..77676+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTAATCCCATACTACGTGTCGTTTCACCACCTAAATAGACACGAATA
CTTAAAAAGTCAGTTGGGCAAGCAGTCTCACAGCGCTTACAGCCGACACA
ATCTTCGGTACGAGGAGCTGAAGCAATTTGCCCAGCCTTACACCCATCCC
ATGGAACCATTTCTAGTACATCAGTAGATGCTAATCCCATACTACGTGTC
GTTTCACCACCTAAATAGACACGAATACTTAAAAAGTCAGTTGGGCAAGC
AGTCTCACAGCGCTTACAGCCGACACAATCTTCGGTACGAGGAGCTGAAG
CAATTTGCCCAGCCTTACACCCATCCCATGGAACCATTTCTAGTACATCA
GTAG
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