mRNA_L-elsbetiae_contig16108.4198.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16108.4198.1
Unique NamemRNA_L-elsbetiae_contig16108.4198.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig16108.4198.1 vs. uniprot
Match: A0A6H5JF26_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF26_9PHAE)

HSP 1 Score: 303 bits (776), Expect = 5.720e-93
Identity = 190/354 (53.67%), Postives = 229/354 (64.69%), Query Frame = 1
Query:    1 GLVPNGISSTDVFIISRLGDTTSYFFSWFCKKYRIRIGA-RDLGRKEETQSRCPICLDACTKSTIELRCGHSFCRSCLTRSAANNMTSCALCRREQEINPELLRARFDEQRMLNLAQRLSI-PPPLRPRPSASAASMAAAEG---EREGQARLSSGGSPTLAREMLFGPWGDVGAMSADDLRRRWRFG-SVQTSTVGAVSASEIRSSWLEL----KQCMFMQGDGEYSRT--------DSMSCSGDTEIVVHEIGDRARRSPTASPGSPVAGGSSPDDLSVRWRNLTRIPPS---DSTKAEE------TSTDEVWGDIGSSDSACLRKRWLEANGAEAIGHLEVGELSEKLNHA 981
            G +  GI+  DVFI+SRL DTTSYFF+WFCKKYRI+IG  R LG KEE  +RCPICLD+CTKS IEL+CGHSFCRSCL RSAANNMTSCALCRREQEI+PE LRARFDEQRMLNLAQRL+I PPPLR RPSA++A+M+A+EG   E++ + R+    + T  RE+  G  GDVGAMS+DDLRRRW  G    ++T GA S+SE+RSSW E     +  M M  +GE   T        DS+SCSG  +I  H  G   RR    SP S  AG    D + +   +  RIP S   D   A         +T     D+G  D+ACLRKRW EA     +G + V EL+E L  A
Sbjct:   10 GTLRAGIAPADVFILSRLNDTTSYFFAWFCKKYRIQIGPPRGLGGKEEN-TRCPICLDSCTKS-IELQCGHSFCRSCLIRSAANNMTSCALCRREQEIDPEQLRARFDEQRMLNLAQRLAILPPPLRSRPSATSAAMSASEGAYEEKDVRVRVKVVPTSTTGREVFVGLGGDVGAMSSDDLRRRWSCGVHTASATAGAASSSELRSSWRESHDRSRSLMPMHSEGELCGTSCQVLHGADSVSCSGHADIGSHFTGASPRR----SPDSQCAGRGRVDSMCLERHSSPRIPSSNFGDDASASALPARGGNTTPFETSDVGGLDAACLRKRWHEAMEFGDVGDMPVSELAESLTLA 357          
BLAST of mRNA_L-elsbetiae_contig16108.4198.1 vs. uniprot
Match: D7G6B8_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6B8_ECTSI)

HSP 1 Score: 302 bits (774), Expect = 3.410e-92
Identity = 191/356 (53.65%), Postives = 236/356 (66.29%), Query Frame = 1
Query:    1 GLVPNGISSTDVFIISRLGDTTSYFFSWFCKKYRIRIGA-RDLGRKEETQSRCPICLDACTKSTIELRCGHSFCRSCLTRSAANNMTSCALCRREQEINPELLRARFDEQRMLNLAQRLSIPPP-LRPRPSASAASMAAAEG---EREGQARLSSGGSPTLAREMLFGPWGDVGAMSADDLRRRWRFGSVQT--STVGAVSASEIRSSWLEL----KQCMFMQGDGEYSRT--------DSMSCSGDTEIVVHEIGDRARRSPTASPGSPVAGGSSPDDLSVRWRNLTRIPPSD----------STKAEETSTDEVWGDIGSSDSACLRKRWLEANGAEAIGHLEVGELSEKLNHA 981
            G +  GI+  DVFI+SRL DTTSYFF+WFCKKYRI+IG  R LG KEE ++RCPICLD+CTKS IEL+CGHSFCRSCL +SAANNMTSCALCRREQEI+PE LRARFDEQRMLNLAQRL+IPPP +R RP+A+ A+M+A+EG   E+E + R+    + T  RE+LFG  GDVGAMS+DDLRRRW  G VQT  ST GA S+SE+RSSW E     +  M +  +G+   T        DS+SCSG  +I  H  G   RR    SP S  AGG   + + +   +  RIPPS+            + E T+  E   D+G  D+ACLRKR  EA     +G + V EL+ +L  A
Sbjct:   10 GALRTGIAPADVFILSRLNDTTSYFFTWFCKKYRIQIGPPRGLGGKEE-KTRCPICLDSCTKS-IELQCGHSFCRSCLIQSAANNMTSCALCRREQEIDPEQLRARFDEQRMLNLAQRLAIPPPPVRSRPTATGAAMSASEGACEEKEVRVRVGVVPTSTTQREVLFGLGGDVGAMSSDDLRRRWSCG-VQTASSTAGAASSSELRSSWRESHDRSRSPMPIHSEGDLFGTSCQVLHGADSLSCSGHADIGSHFTGASPRR----SPDSQCAGGGRVNSMCLERHSSLRIPPSNFGIDASASALPARGENTTPFET-SDVGGLDAACLRKRRHEAMEFGDVGDMPVSELAGRLTLA 357          
BLAST of mRNA_L-elsbetiae_contig16108.4198.1 vs. uniprot
Match: A0A836CQW4_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQW4_9STRA)

HSP 1 Score: 127 bits (320), Expect = 1.460e-28
Identity = 63/116 (54.31%), Postives = 82/116 (70.69%), Query Frame = 1
Query:    7 VPNGISSTDVFIISRLGDTTSYFFSWFCKKYRIRIGARDLGRKEETQSRCPICLDACTKSTIELRCGHSFCRSCLTRSAANNMTSCALCRREQEINPELLRARFDEQRMLNLAQRL 354
            +P G  + D FI++RL D TSYF +WFCK +R+R+            S CPICLD  T S I+L+CGH+FCRSCL  SAA N T+CALCRREQ ++P+ LR +FD++RM NLA+RL
Sbjct:  204 MPKGEGALDNFIVARLNDETSYFMTWFCKHFRLRLNT--------APSSCPICLDTVTNS-IQLQCGHAFCRSCLAASAACNFTTCALCRREQILHPDELRQQFDQRRMANLARRL 310          
BLAST of mRNA_L-elsbetiae_contig16108.4198.1 vs. uniprot
Match: A0A4D9CMH2_9STRA (RING-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CMH2_9STRA)

HSP 1 Score: 107 bits (268), Expect = 5.400e-22
Identity = 102/341 (29.91%), Postives = 150/341 (43.99%), Query Frame = 1
Query:   31 DVFIISRLGDTTSYFFSWFCKKYRIRIGARDLGRKEETQSRCPICLDACTKSTIELRCGHSFCRSCLTRSAANNMTSCALCRREQEINPELLRARFDEQRMLNLAQRLSIPPPLR--PRPSASAASMAAAEGEREGQARLSSGG----SPTL-AREMLFGPWGDVGAMSADDLRRRWR------FGSVQTSTVGAVSASEIRSSW--------------LELKQCMFMQGDGEYSRTDSMSCSGDTEIVVHEIGDRARRSPTASPGSPVAG-GSSPDDLSVRWRNLTRIPPSDSTKAEETSTDEVWGDIGSSDSACLRKRWLEANGAEA--IGHLEVGELS 963
            DVF +SRL D T+YFF W CK+Y + +       K E  S CPICL+  ++++I+L CGH+FCR CL  +A   M+SCALCR+   ++P++LR +F  QR  N++ RL      R   +PS  A    A  G      + S  G    SP+  A E+  G  G VG       + R R       G +    +   +A  +R ++              L+ +  M M G       +S    G   ++  E G  +    T   G    G G   D +  RW +L R       + +E       G +G  D A L   W EA G E+  +G  +V  L+
Sbjct:   69 DVFYLSRLNDPTTYFFQWICKRYGLTV-------KAEPHS-CPICLET-SENSIQLSCGHTFCRQCLKAAAEQKMSSCALCRKSHTLDPDVLRQQFQTQRFANMSWRLGNTRATRVFSKPSWEAL-FCAGSGGAGNAGKCSDVGDRASSPSCEAGEVPTGGGGSVGVTKGKGGKERGRGYVGPDIGGLPHRLLMRRAAKSVRRAFVSPDPDVGGSTRAELQRRWSMLMGGKA----AESKQWKGGVAVLTEEAGAESVAGLTRRWGRGREGQGGQADCMGSRWSDLMR-----QGQGKE-------GGVGGEDQAALTAWWREARGQESAEVGAAKVPTLA 383          
BLAST of mRNA_L-elsbetiae_contig16108.4198.1 vs. uniprot
Match: A0A7S3XVA3_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVA3_HETAK)

HSP 1 Score: 107 bits (266), Expect = 1.120e-21
Identity = 111/379 (29.29%), Postives = 163/379 (43.01%), Query Frame = 1
Query:   25 STDVFIISRLGDTTSYFFSWFCKKYRIRIGARDLGRKEETQSRCPICLDACTKSTIELRCGHSFCRSCLTRSAANNMTSCALCRREQEINPELLRARFDEQRMLNLAQRLS----------------------IPP-------PL---RPRPSASAASMAAAEGEREGQARLSS----GGSPTLAREMLFGP----------WGDVGAMSADDLRRRW--------------RFGSVQTSTVGAVSASEIRSSWL----ELKQCMFMQGDGEYSRTDSMSCSGDTEIVVHEIGDRARRSPTAS----PGS--PVAGGSSPDDLSVRWRNLTRIPPSDSTKAEETSTDEVWGDIGSSDSACLRKRWLEANGAEAIGHLEV 951
            S DVF++SR+ D +SYF++WFCK++  ++ A    ++      CPICL++   S IEL+CGHSFCR CLT SA   ++ C LCR    +NPE+LR  F++QR+ NL +R                        + P       PL    PRPS+S+A       E++   +L S     G  + A+  L               DVGA+ A DL+  +              R G V+    GA S  ++ + W     +    M  Q    +  T + SC   T         R  ++PT      P S  P  G S   +LS RW NL     S++ ++ E       GD+       L +RW  A G+  +G   V
Sbjct:   38 SGDVFLVSRMNDESSYFYTWFCKRFEFKLKANKTYKEN-----CPICLESELHS-IELQCGHSFCRGCLTHSAEMKISCCPLCRANICLNPEVLRKNFEDQRIRNLMRRFQNVDRQKSFSSLSFLSTEEEKDHVDPVEQWRQMPLICPAPRPSSSSA-------EKKYLKKLPSPVIWSGKTSPAKPALRNASHISLDDPAFTRDVGALDASDLQELFSASLAFLDQMGAAKRKGEVRPPDAGACSVVDLSARWAAAHADPSVGMLPQLKLSHRLTTARSCRRST--------GRGSKTPTPPCAPLPDSWAPDVGASGTSELSTRWANL-----SNAARSPEA------GDLSIPQ---LHERWCAALGSPDVGSTAV 381          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16108.4198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JF26_9PHAE5.720e-9353.67RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G6B8_ECTSI3.410e-9253.65RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A836CQW4_9STRA1.460e-2854.31RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A4D9CMH2_9STRA5.400e-2229.91RING-type domain-containing protein n=2 Tax=Monodo... [more]
A0A7S3XVA3_HETAK1.120e-2129.29Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16108contigL-elsbetiae_contig16108:2590..3690 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue5.1e-07
Seed eggNOG ortholog36331.EPrPI00000018043
KEGG koko:K10667
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RING-type zinc-finger
EggNOG OGs1MEF3@121069,COG2802@1,KOG4159@2759
EC2.3.2.27
COG Functional cat.O
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400,ko04121
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-10_001270.1
Exons1
Model size1101
Cds size1101
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815665.3354182-CDS-L-elsbetiae_contig16108:2589..36901622815665.3354182-CDS-L-elsbetiae_contig16108:2589..3690Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16108 2590..3690 -
1691683024.363291-CDS-L-elsbetiae_contig16108:2589..36901691683024.363291-CDS-L-elsbetiae_contig16108:2589..3690Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16108 2590..3690 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16108.4198.1prot_L-elsbetiae_contig16108.4198.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16108 2590..3690 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16108.4198.1

>prot_L-elsbetiae_contig16108.4198.1 ID=prot_L-elsbetiae_contig16108.4198.1|Name=mRNA_L-elsbetiae_contig16108.4198.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=367bp
GLVPNGISSTDVFIISRLGDTTSYFFSWFCKKYRIRIGARDLGRKEETQS
RCPICLDACTKSTIELRCGHSFCRSCLTRSAANNMTSCALCRREQEINPE
LLRARFDEQRMLNLAQRLSIPPPLRPRPSASAASMAAAEGEREGQARLSS
GGSPTLAREMLFGPWGDVGAMSADDLRRRWRFGSVQTSTVGAVSASEIRS
SWLELKQCMFMQGDGEYSRTDSMSCSGDTEIVVHEIGDRARRSPTASPGS
PVAGGSSPDDLSVRWRNLTRIPPSDSTKAEETSTDEVWGDIGSSDSACLR
KRWLEANGAEAIGHLEVGELSEKLNHAIGSQGSGGLGAACLRKSWHEAIG
TDTSVGHLNVRELSYRL
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mRNA from alignment at L-elsbetiae_contig16108:2590..3690-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16108.4198.1 ID=mRNA_L-elsbetiae_contig16108.4198.1|Name=mRNA_L-elsbetiae_contig16108.4198.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1101bp|location=Sequence derived from alignment at L-elsbetiae_contig16108:2590..3690- (Laminarionema elsbetiae ELsaHSoW15)
GGCCTTGTTCCAAACGGAATTTCCTCCACCGACGTTTTCATCATTTCCCG GCTCGGAGACACGACCTCGTACTTCTTCTCGTGGTTCTGCAAGAAGTATC GAATTCGTATCGGGGCACGTGACCTTGGACGTAAGGAGGAAACTCAATCC AGATGCCCGATTTGCTTGGACGCGTGTACGAAGTCCACCATCGAACTTCG ATGCGGACATTCTTTCTGTCGCTCGTGCCTGACGCGATCAGCCGCGAACA ACATGACGTCATGTGCCCTCTGCCGGCGTGAGCAAGAGATCAATCCTGAG CTTTTGCGCGCCCGTTTTGATGAACAGCGAATGCTCAACCTCGCACAGCG CCTGTCGATCCCGCCACCGTTGCGTCCACGCCCAAGCGCGTCAGCTGCGT CCATGGCTGCCGCCGAAGGAGAGCGCGAGGGACAAGCAAGGCTTAGTTCA GGTGGTTCTCCGACGTTGGCAAGGGAGATGCTGTTCGGGCCATGGGGTGA CGTAGGGGCGATGTCAGCGGACGATCTTCGACGCCGTTGGAGGTTCGGCA GTGTGCAGACGTCGACCGTTGGAGCTGTGTCCGCATCCGAGATTCGTTCT TCTTGGCTCGAGTTAAAGCAGTGCATGTTCATGCAGGGCGACGGCGAGTA CTCAAGAACGGATAGCATGAGCTGCTCTGGCGATACAGAGATTGTTGTCC ATGAAATCGGCGACAGGGCACGGCGCTCCCCGACTGCCAGTCCTGGCTCG CCAGTCGCAGGGGGGAGCTCGCCAGATGACCTGTCCGTTCGCTGGCGGAA TTTGACAAGGATCCCGCCGAGCGACAGTACAAAGGCCGAAGAAACCTCGA CCGATGAGGTGTGGGGTGATATCGGCAGCTCGGACTCAGCGTGTCTTCGT AAACGCTGGCTCGAAGCAAATGGGGCTGAAGCTATTGGTCACTTGGAAGT TGGTGAGCTATCAGAGAAGCTGAACCACGCTATCGGCTCACAGGGTAGCG GCGGCTTGGGTGCAGCTTGTCTTCGGAAAAGCTGGCACGAAGCAATCGGG ACTGATACCAGCGTTGGTCATTTGAACGTTCGCGAGCTGTCATACAGGCT G
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16108:2590..3690-

>mRNA_L-elsbetiae_contig16108.4198.1 ID=mRNA_L-elsbetiae_contig16108.4198.1|Name=mRNA_L-elsbetiae_contig16108.4198.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2202bp|location=Sequence derived from alignment at L-elsbetiae_contig16108:2590..3690- (Laminarionema elsbetiae ELsaHSoW15)
GGCCTTGTTCCAAACGGAATTTCCTCCACCGACGTTTTCATCATTTCCCG
GCTCGGAGACACGACCTCGTACTTCTTCTCGTGGTTCTGCAAGAAGTATC
GAATTCGTATCGGGGCACGTGACCTTGGACGTAAGGAGGAAACTCAATCC
AGATGCCCGATTTGCTTGGACGCGTGTACGAAGTCCACCATCGAACTTCG
ATGCGGACATTCTTTCTGTCGCTCGTGCCTGACGCGATCAGCCGCGAACA
ACATGACGTCATGTGCCCTCTGCCGGCGTGAGCAAGAGATCAATCCTGAG
CTTTTGCGCGCCCGTTTTGATGAACAGCGAATGCTCAACCTCGCACAGCG
CCTGTCGATCCCGCCACCGTTGCGTCCACGCCCAAGCGCGTCAGCTGCGT
CCATGGCTGCCGCCGAAGGAGAGCGCGAGGGACAAGCAAGGCTTAGTTCA
GGTGGTTCTCCGACGTTGGCAAGGGAGATGCTGTTCGGGCCATGGGGTGA
CGTAGGGGCGATGTCAGCGGACGATCTTCGACGCCGTTGGAGGTTCGGCA
GTGTGCAGACGTCGACCGTTGGAGCTGTGTCCGCATCCGAGATTCGTTCT
TCTTGGCTCGAGTTAAAGCAGTGCATGTTCATGCAGGGCGACGGCGAGTA
CTCAAGAACGGATAGCATGAGCTGCTCTGGCGATACAGAGATTGTTGTCC
ATGAAATCGGCGACAGGGCACGGCGCTCCCCGACTGCCAGTCCTGGCTCG
CCAGTCGCAGGGGGGAGCTCGCCAGATGACCTGTCCGTTCGCTGGCGGAA
TTTGACAAGGATCCCGCCGAGCGACAGTACAAAGGCCGAAGAAACCTCGA
CCGATGAGGTGTGGGGTGATATCGGCAGCTCGGACTCAGCGTGTCTTCGT
AAACGCTGGCTCGAAGCAAATGGGGCTGAAGCTATTGGTCACTTGGAAGT
TGGTGAGCTATCAGAGAAGCTGAACCACGCTATCGGCTCACAGGGTAGCG
GCGGCTTGGGTGCAGCTTGTCTTCGGAAAAGCTGGCACGAAGCAATCGGG
ACTGATACCAGCGTTGGTCATTTGAACGTTCGCGAGCTGTCATACAGGCT
GGGCCTTGTTCCAAACGGAATTTCCTCCACCGACGTTTTCATCATTTCCC
GGCTCGGAGACACGACCTCGTACTTCTTCTCGTGGTTCTGCAAGAAGTAT
CGAATTCGTATCGGGGCACGTGACCTTGGACGTAAGGAGGAAACTCAATC
CAGATGCCCGATTTGCTTGGACGCGTGTACGAAGTCCACCATCGAACTTC
GATGCGGACATTCTTTCTGTCGCTCGTGCCTGACGCGATCAGCCGCGAAC
AACATGACGTCATGTGCCCTCTGCCGGCGTGAGCAAGAGATCAATCCTGA
GCTTTTGCGCGCCCGTTTTGATGAACAGCGAATGCTCAACCTCGCACAGC
GCCTGTCGATCCCGCCACCGTTGCGTCCACGCCCAAGCGCGTCAGCTGCG
TCCATGGCTGCCGCCGAAGGAGAGCGCGAGGGACAAGCAAGGCTTAGTTC
AGGTGGTTCTCCGACGTTGGCAAGGGAGATGCTGTTCGGGCCATGGGGTG
ACGTAGGGGCGATGTCAGCGGACGATCTTCGACGCCGTTGGAGGTTCGGC
AGTGTGCAGACGTCGACCGTTGGAGCTGTGTCCGCATCCGAGATTCGTTC
TTCTTGGCTCGAGTTAAAGCAGTGCATGTTCATGCAGGGCGACGGCGAGT
ACTCAAGAACGGATAGCATGAGCTGCTCTGGCGATACAGAGATTGTTGTC
CATGAAATCGGCGACAGGGCACGGCGCTCCCCGACTGCCAGTCCTGGCTC
GCCAGTCGCAGGGGGGAGCTCGCCAGATGACCTGTCCGTTCGCTGGCGGA
ATTTGACAAGGATCCCGCCGAGCGACAGTACAAAGGCCGAAGAAACCTCG
ACCGATGAGGTGTGGGGTGATATCGGCAGCTCGGACTCAGCGTGTCTTCG
TAAACGCTGGCTCGAAGCAAATGGGGCTGAAGCTATTGGTCACTTGGAAG
TTGGTGAGCTATCAGAGAAGCTGAACCACGCTATCGGCTCACAGGGTAGC
GGCGGCTTGGGTGCAGCTTGTCTTCGGAAAAGCTGGCACGAAGCAATCGG
GACTGATACCAGCGTTGGTCATTTGAACGTTCGCGAGCTGTCATACAGGC
TG
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