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Homology
BLAST of mRNA_L-elsbetiae_contig10413.419.1 vs. uniprot
Match: D7FVM5_ECTSI (Protein required for ethanol metabolism n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM5_ECTSI) HSP 1 Score: 271 bits (693), Expect = 2.010e-86 Identity = 160/256 (62.50%), Postives = 181/256 (70.70%), Query Frame = 1
Query: 1 MMARRVLVLACLFLVVAPLQSVSGQDGGLAEAEKLDLDEVLDSLPDAGGGVAEGGDEEEGDSSAPAEVEEGGXQXXDE--DAGDVFEEAEDAXXXXXXXVVDKVESTGXXXXXXXXXXXXXXXXXXGFFKPLFGKRAKTGNKRCSWSWKERRCQPAALCQYKYQASFFLDATIGESCRLADHKLTRRVFENSDVQVKPAVALAGAAGLFSADLVAIRYTNWLERFPLLFNVAQGFVLLFSGDTLFQVLEQGWQKAV 762
MMARRVLVLAC FL VAPLQSVSGQ+GG+AEAE++DLDE+LD+L DA V E G+ DS+A AE G XX D VFEEAE X V V S+ GFFKPLF KR KTGN CSWSWKE+RC+PA+LCQYKYQ FLDAT+ ESCR AD K+T+ FE +DVQVKPAVAL GAAGLF+ADL AIRYT+WL+R+PLLFNV QGFVLL SGDTLFQVLEQGWQK +
Sbjct: 1 MMARRVLVLACFFLAVAPLQSVSGQEGGVAEAEQIDLDELLDTLVDAE--VIEEGE----DSAAAAEAATGDDAXXXXVPDXXAVFEEAEXXXAELEEDVAADVGSS-----------KSAGGGSSGFFKPLFKKRPKTGNALCSWSWKEKRCEPASLCQYKYQ---FLDATVSESCRQADFKVTKAAFEQADVQVKPAVALVGAAGLFAADLAAIRYTDWLKRYPLLFNVVQGFVLLASGDTLFQVLEQGWQKVI 236
BLAST of mRNA_L-elsbetiae_contig10413.419.1 vs. uniprot
Match: A0A836CEJ0_9STRA (Protein required for ethanol metabolism n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEJ0_9STRA) HSP 1 Score: 108 bits (270), Expect = 7.940e-24 Identity = 56/114 (49.12%), Postives = 69/114 (60.53%), Query Frame = 1
Query: 421 RCSWSWKERRCQPAALCQYKYQASFFLDATIGESCRLADHKLTRRVFENSDVQVKPAVALAGAAGLFSADLVAIRYTNWLERFPLLFNVAQGFVLLFSGDTLFQVLEQGWQKAV 762
+C +SW +RC+P A C+YKYQ FLDAT ESCR + +S V PA A+ GA LF+ADL I T L++ PLL NV QGF L SGDT FQV+EQGW +
Sbjct: 125 QCKFSWASKRCEPRAYCEYKYQ---FLDATPSESCRRKGVLKAKHAL-HSGALVSPAAAVGGATALFAADLAVIATTPALKKAPLLTNVVQGFALFLSGDTYFQVIEQGWASKI 234
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | signal peptide |
Ec32 ortholog description | Mpv17/PMP22 |
Ec32 ortholog | Ec-01_009450.1 |
Exons | 4 |
Model size | 762 |
Cds size | 762 |
Stop | 0 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815267.033321-CDS-L-elsbetiae_contig10413:1218..1377 | 1622815267.033321-CDS-L-elsbetiae_contig10413:1218..1377 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10413 1219..1377 + |
1691682806.2022622-CDS-L-elsbetiae_contig10413:1218..1377 | 1691682806.2022622-CDS-L-elsbetiae_contig10413:1218..1377 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10413 1219..1377 + |
1622815267.045247-CDS-L-elsbetiae_contig10413:4187..4523 | 1622815267.045247-CDS-L-elsbetiae_contig10413:4187..4523 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10413 4188..4523 + |
1691682806.2136354-CDS-L-elsbetiae_contig10413:4187..4523 | 1691682806.2136354-CDS-L-elsbetiae_contig10413:4187..4523 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10413 4188..4523 + |
1622815267.055455-CDS-L-elsbetiae_contig10413:5316..5514 | 1622815267.055455-CDS-L-elsbetiae_contig10413:5316..5514 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10413 5317..5514 + |
1691682806.2230508-CDS-L-elsbetiae_contig10413:5316..5514 | 1691682806.2230508-CDS-L-elsbetiae_contig10413:5316..5514 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10413 5317..5514 + |
1622815267.0680907-CDS-L-elsbetiae_contig10413:6699..6768 | 1622815267.0680907-CDS-L-elsbetiae_contig10413:6699..6768 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10413 6700..6768 + |
1691682806.2320015-CDS-L-elsbetiae_contig10413:6699..6768 | 1691682806.2320015-CDS-L-elsbetiae_contig10413:6699..6768 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10413 6700..6768 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig10413.419.1 >prot_L-elsbetiae_contig10413.419.1 ID=prot_L-elsbetiae_contig10413.419.1|Name=mRNA_L-elsbetiae_contig10413.419.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=254bp
MMARRVLVLACLFLVVAPLQSVSGQDGGLAEAEKLDLDEVLDSLPDAGGG VAEGGDEEEGDSSAPAEVEEGGDQDEDEDAGDVFEEAEDAADEAAADVVD KVESTGGGGDGGGSGGDGGGSGGGGFFKPLFGKRAKTGNKRCSWSWKERR CQPAALCQYKYQASFFLDATIGESCRLADHKLTRRVFENSDVQVKPAVAL AGAAGLFSADLVAIRYTNWLERFPLLFNVAQGFVLLFSGDTLFQVLEQGW QKAV back to topmRNA from alignment at L-elsbetiae_contig10413:1219..6768+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig10413.419.1 ID=mRNA_L-elsbetiae_contig10413.419.1|Name=mRNA_L-elsbetiae_contig10413.419.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5550bp|location=Sequence derived from alignment at L-elsbetiae_contig10413:1219..6768+ (Laminarionema elsbetiae ELsaHSoW15) ATGATGGCTCGACGTGTACTAGTGCTGGCGTGCCTCTTCCTTGTTGTGGC
CCCGCTTCAATCGGTGTCCGGGCAGGATGGTGGGTTAGCAGAGGCTGAGA
AGCTAGACTTGGACGAGGTTTTAGACTCGCTGCCAGACGCGGGAGGAGGA
GTAGCAGAGGTGAGCCTATAACCTGCAGAGTACGACCGGCAGCATGTATA
TGGGCGGCCCGTTGTGGGGTTGAGAGGCGGGACGCCGTTGTTATTTATCT
ATTTCGCTCATCCATCGTTGGCATCATGCCTGCGGAAATCCTCCTGTAAC
ATGCAAACCCCGTTAGGACGCGGACGTTGGTGTGTCTTCGGGAAATCCCT
GGAGAGAGGGAGGACGTCTTGTTGATGATCGTTGCCCATGTCGGCCGACC
TCCCTGCCTCCCAGTGCTGTGCCACCACGGTTCTCGTTGCGCATATTGGT
AGATTCTCCTCCTGTTCTCGCGGCGGTGCTTGTGGACGACTACAATATTG
TACTGCAAACACTTCGTTGCGCGCGTTTCGAAATGTTCGTTGAAAAATTG
TTTTTGGGGGTGTCGTTCATGAAGATAAAGCGCAACGCCCACATGACGAT
TTACGCATCTGGACTATCCATCAGTAGGGGTGGCGTATCTCTCTTTCTCT
CTATTTCCCTGTCTTCTGAAAGACGCAGTCTTCTTGGCGCCCGGGTCTGG
TAGTGGTGTTTCGATTCCCGCCTCGTGTGGTGTGCGAGAGGAGGTGGAAG
AAATGTTCTTATAAACGGTTTATTGTTTCCACACTGTAGTAACGCACCCC
CTGGACCGGTTTTGAAAGCTCAAGTACTCGACAGCGAGCTTCAGCCCCCA
AAAGGGCGGCGTTGGAAATATATCATCAAGAGCTGTCCGAAAACGTGTCG
TTTGGTATTAGAATCATAGTTCTTTGCGGAGTAACCGAGCTTTGAAAATC
GGCCCAGGGTGTGTGTGTTATCTTGTCGTACCTACCATACACGGACGGTA
TATAGACTAGTCTGTCCATCGGGTGCGAGGATGAAAGGAACCCCTCCACA
ACAAGGCAACCATAATTATTTCTTTACCATCATGTGCATGCGTCGTTAAA
ACCTGTGGCGCTCTGGTCCATTTGCGAAGGCGTGCGTTGGTGCCGCGCGT
CAACCGTGCGTTGGTGCCGCGCGTCAACCGCCGCGCACAGGCACACAACA
TGTGCCGTGCGCCGTGCATGGAAGCCGCTCTCGTTAAATTCCGCACTTCC
AAGTACACACGTGATCTGCCGTGTATTCCGCCGCATACCTGTAACACAAT
CTCCCGGTATTTTGGCAGATACCACACCCTTGCATTATGATATTTAATAG
ACTCATCTCATCTCATTCCATTACAAACTGCTGTGGTAATCTCTCAAAGC
AGTAACCCGCATTTTTATACTACATCTGTGTATTGACACGAAGGACACAG
AGTTTTAGTTTTGCCCACTGACCCGTGGTCACACAGAAGGGTTCCTCTCC
CCGGGGTCCCCCGCACTCCCCATCTGCGGTGCTTGCCTAAGATTTTTGAT
GGCGAGAAGGGTTAGGGTTCAGCCATCCCTTTCTCTCGTCGACGGTGAGG
TTTGAAGTTTACTAGACCCCTACACCAGCATTTTGACTTGTCGGGTTGAA
CAACGCGATCGATGCATTGTTTCTACATAGTTTTCTAGTTTTGGGGGCAG
ATGGCAAAATCACGTCATCGCTAGTGGTGGTTTTCTCCCCAGTATATGTA
CATGTTGGTATATGTACATGTTGGTTGACCTGGCAGAGTTTTGCATTAAT
TGTTCGGAAATTTTGAGGTGTTTTTCTGCATACTTCACACTGAACTACAA
GTACTTTACGTCACCAGACAGACAAGACAACATGGAAAACCGGTTAAATA
TAACCCACGGAGTCCCGGCTCTCATGTGGGCTGAGGTTTCCAATTTTGGA
TTCACTGATTTCCATCTGAACCTGTTGGGATACCGCAGGTGCTTGGAGCC
CTTCTTACTTAGATGTGTCGCCGTGTTTCTTGTCCGTGCTGGTCTCCAAC
CTTAGGGTTGGGGTTAGCGTAACCCCAACCCTAACCCAACCTCCACAGGA
TTGAGCGTTTTTTCATGTTCCTGGTGCGGAGCATTTCTGTCAGTTTCGCA
CCGCACGGGATCGATCGCATCGTCCGTTGGACGAGTAAATATATGTACCC
AGACATATGTAAGGTGTCACCTACATGCGTTGGATGAACAAATATACGGA
CAGGCGAAGGTACACCTACATGCGTTGGATGAGCAAATATGCGGACAGAC
GAAGGTACACCTACAGAGGGGAGAGAGGGATCGGAACGCTTTCAAATGTG
ACAGATTATTACCAGAGGAAGAAGAGAAGAGTTGATCGCGCGCCTGCCGC
GTCTGTGCTCCCTTCGTATCTCAAATTCTCAACCAACTTTCTCCCAGCCT
GGTGCCGTCGTCTGTGCCGTCGTCTGTTGACAAAACTAATGACACGGCGC
TGTCCGGCTGGCTGGTCTCTGGGGCCCAAGGCAGATACATAGATCAGAGG
CACCACCATGCCATTTGTTTGGCACGTGCCTTTCGTCGCCCGTTATGGGG
GGGGGGGGGGGGGGGGGGGCTCAGATCGTGACGAACAAGCAGCAGCGAGG
GTTGTCATCTTTCCGTCATCGGAATTAATCGAAACACCTCTAACGCGCTC
TGAACAGCTCCCCCCCCCCCCCCCCCCACCCCGCCTTCGCGAAGAATTCA
TGTCTATATACAGGAAATAATAGGCAGGGGTTCCGTATTCCTAACCCTAA
CCCCTACCCCAAACCGACCCCCCATTAGCCGTTTCCATACTTTTGTCCCA
TGTCCCATGTCCCATGTCCCATGTGATTTATTCCACTAAAACGTGCGAAG
GCTACTGACACACACACACCTCTCATTTCAACATTCCCCCCTTTTTTTGT
ATCGGTGGACATGTGTCAGGGTGGGGATGAAGAAGAGGGAGACAGCAGCG
CGCCCGCCGAAGTAGAAGAAGGGGGGGACCAGGACGAGGACGAGGACGCC
GGGGACGTGTTTGAGGAGGCGGAGGATGCTGCCGACGAGGCCGCCGCGGA
CGTGGTCGATAAGGTCGAGAGCACCGGCGGCGGCGGTGATGGCGGCGGCA
GCGGCGGTGATGGCGGCGGCAGCGGCGGCGGCGGGTTCTTCAAGCCCCTG
TTCGGGAAGCGCGCCAAGACCGGCAACAAGCGGTGCAGCTGGTCGTGGAA
GGAGCGGCGGTGCCAGCCGGCGGCGCTCTGCCAGTACAAGTACCAGGCGA
GTTTTGTTGTTGCGTGTTTATTTTGTGTGTTGTGGGCTCTTTTTTTTGTT
GTTGTGTTGATCGATCGATGGAGATCTATTTCCTCCTGCTATATTTGTTT
TTACCTTCTTTCCTTTCCCATGAGCCCTGTTCTGCTGTCGTCGCTGGTGC
TGCTTTGTTTGCTGGCCGGAGATGTCGAGGTGTCCTTCTCTTTTTTCTTG
ACCGACAAATCCTATTATATGCGTTGCATACCTACGTGTTAAGTCTTTCG
ATGCTGCCTGATGGCTCTGCGGTAGTGTTTCTACCGGGTCGTCACCCCCG
CCCCACCTACCCCACCCCCCAGGGTGAGGGGCATGGTTGACCCCTCTTTC
GTTTCCTGTCGATGCCCTTCCGACATGTGTGCTACATACGCCAGCCATAT
CGCATACCGTATACCGTAATCATGCGGGTTATCGCACCCCCGTGTTCGCG
TTATTCTATCCTACAAGCGTATTTCTCCACGACCAGGAGGGTGCGAACCC
TAACTGATACCTCTCTGGAAAACCACCCTCTTCGGCAGTGGCACCCTCCT
GGCTGTGGAGAAATACGCTTATAGAAGAACCTTGACACGGGGGTGCGATA
ACCCGCATGATTACACGGCACGTAGTGTGCCTCGGCGCGTTCTCGTTTCG
TTCCTCGTGCCCGCCACTAATGCCGCCGCCACCTACATACACGACCATAA
ATGCCCGACACCAATCGTAAAAAAAACGCTTACGCACACGCACACGCACA
CGCACACGCACACACGCACGGCGATGGATGGCGGCGAAACGGGAGCAGTT
CTTGGACGCGACGATAGGCGAGTCGTGCCGGCTCGCCGACCACAAGCTGA
CGAGAAGGGTGTTCGAGAACTCCGACGTCCAGGTCAAGCCGGCCGTCGCC
TTGGCGGGCGCGGCGGGGCTCTTCTCCGCCGACCTGGTGGCCATCCGCTA
CACCAACTGGCTGGAGCGGTTTCCTCTCCTGTTCAACGTGGCGCAGGTGC
GCGGCGCACACGCGTCTTGGGCACGGCAGGGGGTGGGCGGGGCAAGGGGG
CGGGGGTTATAGATAGGTGGTGGTTGTCGTTGGTGAGTGGCGGAGATGGT
CTTGGTCGTGATCGTGCATGCCTGGGGGGGAGGGGGGGGTACTTTCGGTT
TTGCTAGACACGTGGTCTTTGCACAGCAGGTCAGGATGCTGTTTACTACC
CTGTACAACTATATAGTTGTCCATTTTGGTCTGAAAATAAATGTCCCAAT
ACAGCGGGCATTACATTGACGGGTCTGCTTTTTTTTCCCTTTTTTTTTGT
CTTGGAGAAAAAAAGCGAAAAAACGAAAAACAAACACCACAGCCAGACTC
GAACCCGCGCTTTTGGCGATTGCAGGAAATTCTGGACACCTATTCAGTTG
CAACTATTTTGGCAACTATTTATTTGTTTGTGTGTCCTCAGGAGGCGGGT
TCGAGTCTCTGCAAGGCCACTTTTTTTTCTTTGTGTTTTTCGCGCCCTCT
CTTTTTTCGTGTATTTTTTTTGTGACTCCTTGCTTCGTGTGTCGACCTCA
ATCGGCAAAAAACCGAAAAAGTTGCCTAATTAGTTGTACAGTCGTCTAAC
AAAAAAAAAGGTTGCTGGCATCTGATCGATCAAGTTTTATGCAGTTGTCG
GTCTCTGTTAGGAAGAGCGGCAGCAGTGCGCACATGAAAACGGCGTCCCG
CCTCGAAAGGGAGAGGAAGACACATTTGAGCAAATATGAACTACTGCTGT
GTTGTGTAGTCCGCAACCCTCCGCCCATTGCCGCTTGCTCGCTGCTACTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTCAGTTGTTTTGGTTGACTC
GACTCCTCGAGCTGGAACATCTGACACCTCCCCTTGCTCTACATACATTG
GAGGTTTCACTATGTGTCTTACTCGGCGTGCTCAGCGCAGAGCTCCGCCT
TTTTTACCCCCAACCTCGCCCCGCGCTGTATGGATGGCGGATGCTGCCTC
GTTGCACTCGCCGTGGCGACGCCATCGAGGATGATTTATACCTTCGTTTT
CGCGCACGTGCTGCGCCCTAGGTGTGTGTGCATACATAGTGCACACATAT
CGTATGCTCACAACCCCCCCCCCCTCCTCCTCCCCTTCCCCTCCGTGCGC
CCCCGCGCTGCTGCTTGCCGCCTTGTCCCAGGGGTTTGTGTTGTTATTTT
CGGGCGACACCCTCTTCCAGGTGCTGGAGCAAGGCTGGCAAAAGGCGGTG
back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig10413:1219..6768+ >mRNA_L-elsbetiae_contig10413.419.1 ID=mRNA_L-elsbetiae_contig10413.419.1|Name=mRNA_L-elsbetiae_contig10413.419.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1524bp|location=Sequence derived from alignment at L-elsbetiae_contig10413:1219..6768+ (Laminarionema elsbetiae ELsaHSoW15) ATGATGGCTCGACGTGTACTAGTGCTGGCGTGCCTCTTCCTTGTTGTGGC CCCGCTTCAATCGGTGTCCGGGCAGGATGGTGGGTTAGCAGAGGCTGAGA AGCTAGACTTGGACGAGGTTTTAGACTCGCTGCCAGACGCGGGAGGAGGA GTAGCAGAGATGATGGCTCGACGTGTACTAGTGCTGGCGTGCCTCTTCCT TGTTGTGGCCCCGCTTCAATCGGTGTCCGGGCAGGATGGTGGGTTAGCAG AGGCTGAGAAGCTAGACTTGGACGAGGTTTTAGACTCGCTGCCAGACGCG GGAGGAGGAGTAGCAGAGGGTGGGGATGAAGAAGAGGGAGACAGCAGCGC GCCCGCCGAAGTAGAAGAAGGGGGGGACCAGGACGAGGACGAGGACGCCG GGGACGTGTTTGAGGAGGCGGAGGATGCTGCCGACGAGGCCGCCGCGGAC GTGGTCGATAAGGTCGAGAGCACCGGCGGCGGCGGTGATGGCGGCGGCAG CGGCGGTGATGGCGGCGGCAGCGGCGGCGGCGGGTTCTTCAAGCCCCTGT TCGGGAAGCGCGCCAAGACCGGCAACAAGCGGTGCAGCTGGTCGTGGAAG GAGCGGCGGTGCCAGCCGGCGGCGCTCTGCCAGTACAAGTACCAGGCGAG TTTTGGTGGGGATGAAGAAGAGGGAGACAGCAGCGCGCCCGCCGAAGTAG AAGAAGGGGGGGACCAGGACGAGGACGAGGACGCCGGGGACGTGTTTGAG GAGGCGGAGGATGCTGCCGACGAGGCCGCCGCGGACGTGGTCGATAAGGT CGAGAGCACCGGCGGCGGCGGTGATGGCGGCGGCAGCGGCGGTGATGGCG GCGGCAGCGGCGGCGGCGGGTTCTTCAAGCCCCTGTTCGGGAAGCGCGCC AAGACCGGCAACAAGCGGTGCAGCTGGTCGTGGAAGGAGCGGCGGTGCCA GCCGGCGGCGCTCTGCCAGTACAAGTACCAGGCGAGTTTTTTCTTGGACG CGACGATAGGCGAGTCGTGCCGGCTCGCCGACCACAAGCTGACGAGAAGG GTGTTCGAGAACTCCGACGTCCAGGTCAAGCCGGCCGTCGCCTTGGCGGG CGCGGCGGGGCTCTTCTCCGCCGACCTGGTGGCCATCCGCTACACCAACT GGCTGGAGCGGTTTCCTCTCCTGTTCAACGTGGCGCAGTTCTTGGACGCG ACGATAGGCGAGTCGTGCCGGCTCGCCGACCACAAGCTGACGAGAAGGGT GTTCGAGAACTCCGACGTCCAGGTCAAGCCGGCCGTCGCCTTGGCGGGCG CGGCGGGGCTCTTCTCCGCCGACCTGGTGGCCATCCGCTACACCAACTGG CTGGAGCGGTTTCCTCTCCTGTTCAACGTGGCGCAGGGGTTTGTGTTGTT ATTTTCGGGCGACACCCTCTTCCAGGTGCTGGAGCAAGGCTGGCAAAAGG CGGTGGGGTTTGTGTTGTTATTTTCGGGCGACACCCTCTTCCAGGTGCTG GAGCAAGGCTGGCAAAAGGCGGTG back to top
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