mRNA_L-elsbetiae_contig16079.4183.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16079.4183.1
Unique NamemRNA_L-elsbetiae_contig16079.4183.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16079.4183.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16079contigL-elsbetiae_contig16079:1573..2156 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size584
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16079.4183.1prot_L-elsbetiae_contig16079.4183.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16079 1633..1935 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815663.8486285-UTR-L-elsbetiae_contig16079:1572..16321622815663.8486285-UTR-L-elsbetiae_contig16079:1572..1632Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16079 1573..1632 +
1691683023.280564-UTR-L-elsbetiae_contig16079:1572..16321691683023.280564-UTR-L-elsbetiae_contig16079:1572..1632Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16079 1573..1632 +
1622815663.8706362-UTR-L-elsbetiae_contig16079:1935..21561622815663.8706362-UTR-L-elsbetiae_contig16079:1935..2156Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16079 1936..2156 +
1691683023.2982671-UTR-L-elsbetiae_contig16079:1935..21561691683023.2982671-UTR-L-elsbetiae_contig16079:1935..2156Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16079 1936..2156 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815663.8611205-CDS-L-elsbetiae_contig16079:1632..19351622815663.8611205-CDS-L-elsbetiae_contig16079:1632..1935Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16079 1633..1935 +
1691683023.2893763-CDS-L-elsbetiae_contig16079:1632..19351691683023.2893763-CDS-L-elsbetiae_contig16079:1632..1935Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16079 1633..1935 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16079.4183.1

>prot_L-elsbetiae_contig16079.4183.1 ID=prot_L-elsbetiae_contig16079.4183.1|Name=mRNA_L-elsbetiae_contig16079.4183.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
MSLSIGAGQFFHDGSGCRLVATQNSSSLRKKLFGFLCSLVPSQSFLGGVF
DDQRRRDKGSNREGSGVKTNSIGGRFMVHGFLPFRMVKRVDYGCSLVRPS
*
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mRNA from alignment at L-elsbetiae_contig16079:1573..2156+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16079.4183.1 ID=mRNA_L-elsbetiae_contig16079.4183.1|Name=mRNA_L-elsbetiae_contig16079.4183.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=584bp|location=Sequence derived from alignment at L-elsbetiae_contig16079:1573..2156+ (Laminarionema elsbetiae ELsaHSoW15)
CTGTCAGTTACCTAGAAACGCGGCGTAATTTCAGTCAGCTTCCAAGCTAA
CGCTCTATAGATGTCATTATCCATAGGGGCTGGGCAGTTTTTCCATGATG
GCTCCGGCTGTAGACTGGTTGCGACCCAAAATTCCTCCTCCCTTCGAAAG
AAGCTGTTTGGATTCCTCTGCAGCCTGGTACCGTCACAAAGCTTTTTAGG
AGGTGTTTTTGACGACCAACGACGACGCGATAAAGGCTCAAATCGGGAAG
GCTCTGGGGTAAAAACCAACAGCATTGGAGGTCGATTCATGGTGCATGGT
TTTCTCCCCTTTCGTATGGTAAAGAGAGTTGACTATGGGTGTTCGCTGGT
GCGACCGTCATGACCGGGATCCATAATTGTGCCAAGCGTCTATGCAATTT
ATGGGTATTTCTCTTCACTGTGCCGAAGCACCGAGCGACTACATGAACTC
CTTGGGCGGCCAACAGCGGTGGGAAGTTTGCTGATGAGACCGTTTCCTAT
AGGAGCAAAACGTCAAATCGAAAATTCGATCACGCCGCAAGGTCGAAAGC
TCAAATCGGATTCTACTTCGACACAAAGCTCCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16079:1573..2156+

>mRNA_L-elsbetiae_contig16079.4183.1 ID=mRNA_L-elsbetiae_contig16079.4183.1|Name=mRNA_L-elsbetiae_contig16079.4183.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig16079:1573..2156+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCATTATCCATAGGGGCTGGGCAGTTTTTCCATGATGGCTCCGGCTG
TAGACTGGTTGCGACCCAAAATTCCTCCTCCCTTCGAAAGAAGCTGTTTG
GATTCCTCTGCAGCCTGGTACCGTCACAAAGCTTTTTAGGAGGTGTTTTT
GACGACCAACGACGACGCGATAAAGGCTCAAATCGGGAAGGCTCTGGGGT
AAAAACCAACAGCATTGGAGGTCGATTCATGGTGCATGGTTTTCTCCCCT
TTCGTATGGTAAAGAGAGTTGACTATGGGTGTTCGCTGGTGCGACCGTCA
TGAATGTCATTATCCATAGGGGCTGGGCAGTTTTTCCATGATGGCTCCGG
CTGTAGACTGGTTGCGACCCAAAATTCCTCCTCCCTTCGAAAGAAGCTGT
TTGGATTCCTCTGCAGCCTGGTACCGTCACAAAGCTTTTTAGGAGGTGTT
TTTGACGACCAACGACGACGCGATAAAGGCTCAAATCGGGAAGGCTCTGG
GGTAAAAACCAACAGCATTGGAGGTCGATTCATGGTGCATGGTTTTCTCC
CCTTTCGTATGGTAAAGAGAGTTGACTATGGGTGTTCGCTGGTGCGACCG
TCATGA
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