mRNA_L-elsbetiae_contig10413.418.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10413.418.1
Unique NamemRNA_L-elsbetiae_contig10413.418.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10413.418.1 vs. uniprot
Match: D7FVM6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM6_ECTSI)

HSP 1 Score: 202 bits (514), Expect = 1.450e-61
Identity = 110/192 (57.29%), Postives = 131/192 (68.23%), Query Frame = 1 
Query:   31 IILLWFGSANAFSLPSAA---PGETIFCQHRLVEHTDQLRQRRYDHDEHDERS-LIPPPHLFCIPAPGGDICLVVDEKGAYHAVRDSCPPLGVPLSQTAVVDSQVNAIGDTLFGTRFHLKDGTVRGPWCPGGGTAGPLLLQLARHRRYP-------------RLARFLLALSQRTAGRRSWREAHHLPPSPP 555
            ++LLW G A AFS  +AA      T F QH LVE TDQL + +      +E S  +PPPHLF IPAPGGD+CLVVDEK  Y+A+RD  PP GVP+SQT VVDSQV+AIGD+LFGTRF+LKDGTVRGPWCPGGGTAGPLLL+LARHRR+              RL   L ++S++   R SW   +  PPS P
Sbjct:   32 VLLLWIGGAYAFSAAAAAGPAAATTEFFQHTLVESTDQLDKLQQPRHHGNECSGPVPPPHLFRIPAPGGDVCLVVDEKKNYYAMRDCFPPFGVPVSQTGVVDSQVDAIGDSLFGTRFNLKDGTVRGPWCPGGGTAGPLLLRLARHRRHRLFNQCIGVARSINRLTHHLFSISKQRRARGSW-ATYFRPPSSP 222
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BLAST of mRNA_L-elsbetiae_contig10413.418.1 vs. uniprot
Match: A0A6H5JUG0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUG0_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 8.930e-55
Identity = 102/195 (52.31%), Postives = 119/195 (61.03%), Query Frame = 1 
Query:   25 YFIILLWFGSANAFSLPSAAPGE---TIFCQHRLVEHTDQLRQRRYDHDEHDERSL---IPPPHLFCIPAPGGDICLVVDEKGAYHAVRDSCPPLGVPLSQTAVVDSQVNAIGDTLFGTRFHLKDGTVRGPWCPGGGTAGPLLLQLARHRRYP-------------RLARFLLALSQRTAGRRSWREAHHLPPSP 552
            + I+LLW G A AFS           T F Q+ LVE TDQL                  +PPPHLF IPAPGGD+CLVVDE  +Y+A+RD  PP GVP+SQT VVDSQV+AIGD+LFGTRF+L+DGTVRGPWCPGGGTAGPLLL LARHRR+               L   L   S++   R SW  +   P SP
Sbjct:   29 FVILLLWVGGACAFSAAXXXXXXXPTTEFFQYTLVESTDQLEXXXXXXXXXXGNEWFEPVPPPHLFRIPAPGGDVCLVVDENKSYYAMRDCFPPFGVPVSQTGVVDSQVDAIGDSLFGTRFNLEDGTVRGPWCPGGGTAGPLLLWLARHRRHRLFTLRIGVARSINHLTHHLFLFSKQRRARGSWATSFRPPSSP 223
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BLAST of mRNA_L-elsbetiae_contig10413.418.1 vs. uniprot
Match: A0A836CM18_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM18_9STRA)

HSP 1 Score: 103 bits (256), Expect = 3.340e-22
Identity = 55/120 (45.83%), Postives = 66/120 (55.00%), Query Frame = 1 
Query:   55 ANAFSLPSAAPGETIFCQHRLVEHTDQLRQRRYDHDEHDERSLIPPPHLFCIPAPGGDICLVVDEKGAYHAVRDSCPPLGVPLSQTAVVDSQVNAIGDTLFGTRFHLKDGTVRGPWCPGG 414
            A+A +L +  P +   C      H DQL                PPP +F IP   G +CLVVDE G  HA+RDSCPPLG P+S T VVDS++  I D  FGTRF+L  G  RG  CPGG
Sbjct:  641 ASAMTLSTTPPLQIKLC------HKDQLAPL----------GAPPPPLVFSIPVLCGTVCLVVDENGKSHAMRDSCPPLGSPISATGVVDSEIGVIEDLRFGTRFYLSSGAPRGRLCPGG 744
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10413.418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FVM6_ECTSI1.450e-6157.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUG0_9PHAE8.930e-5552.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CM18_9STRA3.340e-2245.83Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10413contigL-elsbetiae_contig10413:88..1062 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.9
Seed ortholog evalue8.9e-08
Seed eggNOG ortholog2850.Phatr9046
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Rieske-like [2Fe-2S] domain
EggNOG OGs2DKM1@1,2S634@2759,2XCF7@2836
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionRieske [2Fe-2S] iron-sulphur domain
Ec32 orthologEc-01_009460.1
Exons2
Model size556
Cds size555
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815266.9873977-CDS-L-elsbetiae_contig10413:87..3121622815266.9873977-CDS-L-elsbetiae_contig10413:87..312Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10413 88..312 -
1691682806.1849618-CDS-L-elsbetiae_contig10413:87..3121691682806.1849618-CDS-L-elsbetiae_contig10413:87..312Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10413 88..312 -
1622815266.996842-CDS-L-elsbetiae_contig10413:732..10621622815266.996842-CDS-L-elsbetiae_contig10413:732..1062Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10413 733..1062 -
1691682806.194142-CDS-L-elsbetiae_contig10413:732..10621691682806.194142-CDS-L-elsbetiae_contig10413:732..1062Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10413 733..1062 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10413.418.1prot_L-elsbetiae_contig10413.418.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10413 88..1062 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10413.418.1

>prot_L-elsbetiae_contig10413.418.1 ID=prot_L-elsbetiae_contig10413.418.1|Name=mRNA_L-elsbetiae_contig10413.418.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=185bp
MLPSALPAYFIILLWFGSANAFSLPSAAPGETIFCQHRLVEHTDQLRQRR
YDHDEHDERSLIPPPHLFCIPAPGGDICLVVDEKGAYHAVRDSCPPLGVP
LSQTAVVDSQVNAIGDTLFGTRFHLKDGTVRGPWCPGGGTAGPLLLQLAR
HRRYPRLARFLLALSQRTAGRRSWREAHHLPPSPP
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mRNA from alignment at L-elsbetiae_contig10413:88..1062-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10413.418.1 ID=mRNA_L-elsbetiae_contig10413.418.1|Name=mRNA_L-elsbetiae_contig10413.418.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=975bp|location=Sequence derived from alignment at L-elsbetiae_contig10413:88..1062- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTTCCTTCCGCTCTCCCCGCCTACTTCATAATCCTGCTGTGGTTTGG
GAGTGCGAACGCCTTCTCGCTGCCCTCCGCCGCGCCTGGCGAGACCATTT
TTTGTCAGCACCGTCTCGTCGAACACACCGACCAGCTGCGACAACGGCGA
TATGATCATGATGAGCATGATGAACGTTCTCTTATACCTCCTCCCCACCT
GTTCTGCATCCCCGCGCCTGGGGGAGACATTTGCCTCGTAGTGGACGAGA
AAGGTGCCTACCATGCAGTTCGCGATTCGTGCCCTCCTCTTGGCGTGCCA
CTTTCCCAGACGGCGGTCGTCGATTCGCAGGTGGGGGTGGGGGCGGTCGA
TCTCCACAAGCACTGCTGTTTGCTACGCTTTGATTGAGATTCCCTCGGTT
GTTCCCTGCAGTATAAGCCTCGTCGAATTCCGCTTGTTGAGTTTCTAGGC
AACTCTTTTCGTACGCGGTCTCAGCTGGTTTATATGTAGTGCACGCCGAG
CCCGTTGTACGGCGGTTGCCGGTCGGGTCGATCGGCCGCGCAAGCCGTTC
AAAACCCCGATCACACCCCCCGAGGCCCCCCTACAAGTACTACAAGCACA
AACTATTTACTACGGCTGCACGGCCGCCGCGCTCTGACAGGCCCTCGCCT
ATGCCCCGCTCGTGGTGTATTTATAATCCGCCCTCCTCGCGTATGTATGT
GCAGCAAACTAGAAGCAATAACAACAACAACAACAACAACAACGTTACAG
GTGAACGCCATCGGCGACACCCTGTTCGGAACACGGTTCCACCTCAAAGA
CGGGACCGTCCGCGGGCCCTGGTGTCCCGGCGGTGGGACGGCCGGACCGC
TGCTCCTGCAGCTCGCACGCCACCGGCGGTACCCCCGCCTCGCTCGGTTT
CTCTTGGCCTTGTCGCAGAGAACAGCAGGAAGAAGAAGCTGGCGGGAGGC
CCACCATCTCCCCCCCTCCCCCCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10413:88..1062-

>mRNA_L-elsbetiae_contig10413.418.1 ID=mRNA_L-elsbetiae_contig10413.418.1|Name=mRNA_L-elsbetiae_contig10413.418.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1110bp|location=Sequence derived from alignment at L-elsbetiae_contig10413:88..1062- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTTCCTTCCGCTCTCCCCGCCTACTTCATAATCCTGCTGTGGTTTGG
GAGTGCGAACGCCTTCTCGCTGCCCTCCGCCGCGCCTGGCGAGACCATTT
TTTGTCAGCACCGTCTCGTCGAACACACCGACCAGCTGCGACAACGGCGA
TATGATCATGATGAGCATGATGAACGTTCTCTTATACCTCCTCCCCACCT
GTTCTGCATCCCCGCGCCTGGGGGAGACATTTGCCTCGTAGTGGACGAGA
AAGGTGCCTACCATGCAGTTCGCGATTCGTGCCCTCCTCTTGGCGTGCCA
CTTTCCCAGACGGCGGTCGTCGATTCGCAGATGCTTCCTTCCGCTCTCCC
CGCCTACTTCATAATCCTGCTGTGGTTTGGGAGTGCGAACGCCTTCTCGC
TGCCCTCCGCCGCGCCTGGCGAGACCATTTTTTGTCAGCACCGTCTCGTC
GAACACACCGACCAGCTGCGACAACGGCGATATGATCATGATGAGCATGA
TGAACGTTCTCTTATACCTCCTCCCCACCTGTTCTGCATCCCCGCGCCTG
GGGGAGACATTTGCCTCGTAGTGGACGAGAAAGGTGCCTACCATGCAGTT
CGCGATTCGTGCCCTCCTCTTGGCGTGCCACTTTCCCAGACGGCGGTCGT
CGATTCGCAGGTGAACGCCATCGGCGACACCCTGTTCGGAACACGGTTCC
ACCTCAAAGACGGGACCGTCCGCGGGCCCTGGTGTCCCGGCGGTGGGACG
GCCGGACCGCTGCTCCTGCAGCTCGCACGCCACCGGCGGTACCCCCGCCT
CGCTCGGTTTCTCTTGGCCTTGTCGCAGAGAACAGCAGGAAGAAGAAGCT
GGCGGGAGGCCCACCATCTCCCCCCCTCCCCCCCCGTGAACGCCATCGGC
GACACCCTGTTCGGAACACGGTTCCACCTCAAAGACGGGACCGTCCGCGG
GCCCTGGTGTCCCGGCGGTGGGACGGCCGGACCGCTGCTCCTGCAGCTCG
CACGCCACCGGCGGTACCCCCGCCTCGCTCGGTTTCTCTTGGCCTTGTCG
CAGAGAACAGCAGGAAGAAGAAGCTGGCGGGAGGCCCACCATCTCCCCCC
CTCCCCCCCC
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