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Homology
BLAST of mRNA_L-elsbetiae_contig1606.4174.1 vs. uniprot
Match: D7FV65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV65_ECTSI) HSP 1 Score: 152 bits (384), Expect = 1.010e-42 Identity = 84/134 (62.69%), Postives = 101/134 (75.37%), Query Frame = 3
Query: 57 MDIVNHLLASALESLREGEVEAAEAGFGEAASACCQAYGEIDVVTARTLAHLARVSSLRGKKEFAIQMYEKILRIHEALPEPLSYDHAIALSELAEIREESGSHEEADTLRRRADEIVNELSYQVQQASATSAG 458
M+IVN LLA+AL L++G E AE F +A SAC A+GE D+VTARTLAHLARV L+GK + AIQMYE+ILRIHEALPEPL+ DHA+AL ELA IREE GS AD LRRRAD I+ EL+ + Q A ++ G
Sbjct: 1 MEIVNPLLANALGVLKQGSTEIAEKEFTKAVSACLTAFGETDIVTARTLAHLARVCRLQGKVDVAIQMYERILRIHEALPEPLNSDHAVALGELAAIREEGGSQGSADILRRRADVIMVELAARAQTAESSEDG 134
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 791 |
| Cds size | 504 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815663.1767294-UTR-L-elsbetiae_contig1606:1046..1277 | 1622815663.1767294-UTR-L-elsbetiae_contig1606:1046..1277 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1606 1047..1277 - |
| 1691683022.8555703-UTR-L-elsbetiae_contig1606:1046..1277 | 1691683022.8555703-UTR-L-elsbetiae_contig1606:1046..1277 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1606 1047..1277 - |
| 1622815663.2184248-UTR-L-elsbetiae_contig1606:2958..3014 | 1622815663.2184248-UTR-L-elsbetiae_contig1606:2958..3014 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1606 2959..3014 - |
| 1691683022.892739-UTR-L-elsbetiae_contig1606:2958..3014 | 1691683022.892739-UTR-L-elsbetiae_contig1606:2958..3014 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1606 2959..3014 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815663.1918902-CDS-L-elsbetiae_contig1606:1277..1661 | 1622815663.1918902-CDS-L-elsbetiae_contig1606:1277..1661 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1606 1278..1661 - |
| 1691683022.8682692-CDS-L-elsbetiae_contig1606:1277..1661 | 1691683022.8682692-CDS-L-elsbetiae_contig1606:1277..1661 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1606 1278..1661 - |
| 1622815663.2036254-CDS-L-elsbetiae_contig1606:2838..2958 | 1622815663.2036254-CDS-L-elsbetiae_contig1606:2838..2958 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1606 2839..2958 - |
| 1691683022.8778682-CDS-L-elsbetiae_contig1606:2838..2958 | 1691683022.8778682-CDS-L-elsbetiae_contig1606:2838..2958 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1606 2839..2958 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1606.4174.1 >prot_L-elsbetiae_contig1606.4174.1 ID=prot_L-elsbetiae_contig1606.4174.1|Name=mRNA_L-elsbetiae_contig1606.4174.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=168bp
MDIVNHLLASALESLREGEVEAAEAGFGEAASACCQAYGEIDVVTARTLA
HLARVSSLRGKKEFAIQMYEKILRIHEALPEPLSYDHAIALSELAEIREE
SGSHEEADTLRRRADEIVNELSYQVQQASATSAGRESSDDSSDESDDDDD
DATESSSSERSEDHPNS* back to topmRNA from alignment at L-elsbetiae_contig1606:1047..3014- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig1606.4174.1 ID=mRNA_L-elsbetiae_contig1606.4174.1|Name=mRNA_L-elsbetiae_contig1606.4174.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1968bp|location=Sequence derived from alignment at L-elsbetiae_contig1606:1047..3014- (Laminarionema elsbetiae ELsaHSoW15)
ACTGGCCTGGCTGCTGGCTTGCTGCTTGGCAGCTAACGACGCAGACACCA
ATCATCATGGATATCGTCAATCATTTACTTGCCAGCGCTCTGGAATCCCT
GAGGGAGGGAGAAGTTGAAGCGGCGGAGGCAGGGTTTGGCGAGGCGGCGT
CCGCCTGCTGCCAAGCGTATGGCGAGGCAAGATCGCTGTGTGTGCACCAT
TTTCGACCCAAAAAGAACTCTCCGTTTCTCCCACACATTTTTCTGTACAC
CCTACATACTTTAACTTGCATATTTTCAAAGAAACAACACCCAGGCTATA
CATAATAAGCAGCGTGTTGCATACTTTCAAAAGAAAGAACACATGGCTAT
CTACATGTATGTCTATCCTGAGACACTATGGGCAGGTTCCGAGCTAAAGC
CGGATTGCTCTTCCACGAACGAGGGAAACAAATATCGAAAAATCGACTCC
GTAGGTCGTTCTGAAACGCTCAAAAAAGGGGTTTAAAAAGTTGACGTAAA
AAAAAAACTTGTCCTTCACGTAAAACTTTTATTTTCGTCGCATTCCCGAA
CTTATTTTTAATCCGTTTTTGCGCTATTCGCCTCCGCTTGGCCGATTTAG
GGGGGGTGGGGCCACTCAAAAATTTCGATCAGAGAAAAACTCGCCCGCGG
AGGACGATGTCAAATTTCCAAGAAATCTTGAAATGTCTCACGACAGCTCG
ACATTTTTACACCTATTAGTCGATTGCATTACCGAACTAGGGTATTCTGA
TGATATATTCGTGACCCCCGACCCAAAACTACCCCAACATGAAGTCCGCA
GAGTTTGAATCAGCATGTGGAACGTATGCCCGGGGAGGGGATATTTCATT
TAACTTCAGTATAATTCCAAGTTGTCGGCGTAATAATCTGCAAGCACTGT
TGTTGTCGCTGTAACTCTGTACCAAATGCAAGTCATTGTAGCTTTCTGCC
AACGGATTCGTCATCTCCACCCTAAAAATACTATACCCTGAAAGTTTCAG
GTTGATCTGAGCACTTTTCAACCCCCCGGGGATTTTTTTCAGGTCATCCC
CGGGGTCTGCATGTTCGTATATTACCCACGGGAAATCACTATAAGGGGTT
GAAACCCGGGCACCGCCATTCTAAAAACAAAAAAAAATACCAGTTTCTGT
CATTGATATGTTGTGAGGTCTTGGGATAAAAAATCCAGACATTAGGGGGC
ACGCGGTAAGAATCCCCTACCCCCTCTGAAAAAACCCGGCTTTAGCTCGG
AACCTGCCTTGTAAGCAGTATCTACCCTATTTATTTACTGCAAGTCGACT
ACATATTTCGCCTAACAAAATGACATACCATCGTGTCATTTGAATTTGTG
CAGATAGATGTCGTAACGGCGAGGACGCTAGCACATCTTGCTCGAGTGTC
ATCTTTGCGCGGAAAGAAAGAGTTCGCGATCCAAATGTATGAGAAAATAC
TGCGGATACACGAAGCTTTGCCGGAACCTTTGAGCTACGATCATGCAATT
GCGCTGAGCGAGCTTGCTGAAATTCGAGAAGAAAGTGGGTCCCACGAAGA
AGCTGATACCCTGCGCCGCCGAGCCGACGAAATCGTCAATGAGCTGAGTT
ATCAGGTTCAACAGGCTTCCGCCACAAGTGCAGGGAGAGAATCTAGCGAC
GACTCTAGTGACGAAAGTGATGACGACGATGATGACGCGACAGAGAGCAG
CTCGAGTGAACGGTCAGAAGACCATCCCAACAGCTGAGGAGGCTTCAACA
GCTGAGGAGGCTTTGAAGAGGCTTTTGTGACAAATGTGTAAAAACAGCTG
TTGTAAGCTGGTGTGTTAGCTGGAAAGTGAAGTACTATCGGGTGCGGCCG
TGCGGCCGCCAAGTTTTGATACGGCATGCTTGTCATGCGTGTGTGGGTGT
CGATGAGAACGGTTACGTAATAGCCGTCCTCCCGTTGCTGACAAAATCTG
CAATTAGGTGAAACGAGC back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig1606:1047..3014- >mRNA_L-elsbetiae_contig1606.4174.1 ID=mRNA_L-elsbetiae_contig1606.4174.1|Name=mRNA_L-elsbetiae_contig1606.4174.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1008bp|location=Sequence derived from alignment at L-elsbetiae_contig1606:1047..3014- (Laminarionema elsbetiae ELsaHSoW15)
ATGGATATCGTCAATCATTTACTTGCCAGCGCTCTGGAATCCCTGAGGGA
GGGAGAAGTTGAAGCGGCGGAGGCAGGGTTTGGCGAGGCGGCGTCCGCCT
GCTGCCAAGCGTATGGCGAGATGGATATCGTCAATCATTTACTTGCCAGC
GCTCTGGAATCCCTGAGGGAGGGAGAAGTTGAAGCGGCGGAGGCAGGGTT
TGGCGAGGCGGCGTCCGCCTGCTGCCAAGCGTATGGCGAGATAGATGTCG
TAACGGCGAGGACGCTAGCACATCTTGCTCGAGTGTCATCTTTGCGCGGA
AAGAAAGAGTTCGCGATCCAAATGTATGAGAAAATACTGCGGATACACGA
AGCTTTGCCGGAACCTTTGAGCTACGATCATGCAATTGCGCTGAGCGAGC
TTGCTGAAATTCGAGAAGAAAGTGGGTCCCACGAAGAAGCTGATACCCTG
CGCCGCCGAGCCGACGAAATCGTCAATGAGCTGAGTTATCAGGTTCAACA
GGCTTCCGCCACAAGTGCAGGGAGAGAATCTAGCGACGACTCTAGTGACG
AAAGTGATGACGACGATGATGACGCGACAGAGAGCAGCTCGAGTGAACGG
TCAGAAGACCATCCCAACAGCTGAATAGATGTCGTAACGGCGAGGACGCT
AGCACATCTTGCTCGAGTGTCATCTTTGCGCGGAAAGAAAGAGTTCGCGA
TCCAAATGTATGAGAAAATACTGCGGATACACGAAGCTTTGCCGGAACCT
TTGAGCTACGATCATGCAATTGCGCTGAGCGAGCTTGCTGAAATTCGAGA
AGAAAGTGGGTCCCACGAAGAAGCTGATACCCTGCGCCGCCGAGCCGACG
AAATCGTCAATGAGCTGAGTTATCAGGTTCAACAGGCTTCCGCCACAAGT
GCAGGGAGAGAATCTAGCGACGACTCTAGTGACGAAAGTGATGACGACGA
TGATGACGCGACAGAGAGCAGCTCGAGTGAACGGTCAGAAGACCATCCCA
ACAGCTGA back to top
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