mRNA_L-elsbetiae_contig1606.4179.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1606.4179.1
Unique NamemRNA_L-elsbetiae_contig1606.4179.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1606.4179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1606contigL-elsbetiae_contig1606:24444..25046 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size603
Cds size399
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815663.0966938-CDS-L-elsbetiae_contig1606:24443..248421622815663.0966938-CDS-L-elsbetiae_contig1606:24443..24842Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1606 24444..24842 +
1691683022.820153-CDS-L-elsbetiae_contig1606:24443..248421691683022.820153-CDS-L-elsbetiae_contig1606:24443..24842Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1606 24444..24842 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815663.1086717-UTR-L-elsbetiae_contig1606:24842..250461622815663.1086717-UTR-L-elsbetiae_contig1606:24842..25046Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1606 24843..25046 +
1691683022.830611-UTR-L-elsbetiae_contig1606:24842..250461691683022.830611-UTR-L-elsbetiae_contig1606:24842..25046Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1606 24843..25046 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1606.4179.1prot_L-elsbetiae_contig1606.4179.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1606 24444..24842 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1606.4179.1

>prot_L-elsbetiae_contig1606.4179.1 ID=prot_L-elsbetiae_contig1606.4179.1|Name=mRNA_L-elsbetiae_contig1606.4179.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=133bp
CVFHSAAYSLSPAPLISTPPCTSPAKYLHYGNNLNIHLQILPSISPAFLR
PCPSHLFVSLLCRSDVLSTSSASSAKLPSSAATGIDHPRTTRSLDFRLLR
VFSISLLIAFVSRAMLSPHSMAGVPYFLFFIG*
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mRNA from alignment at L-elsbetiae_contig1606:24444..25046+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1606.4179.1 ID=mRNA_L-elsbetiae_contig1606.4179.1|Name=mRNA_L-elsbetiae_contig1606.4179.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=603bp|location=Sequence derived from alignment at L-elsbetiae_contig1606:24444..25046+ (Laminarionema elsbetiae ELsaHSoW15)
TGCGTATTTCATTCTGCTGCCTATTCCCTTTCCCCCGCGCCTCTCATCTC
CACTCCACCATGTACATCTCCTGCTAAATATCTACATTATGGCAACAATT
TGAATATCCATCTTCAAATTCTTCCCTCTATCTCTCCTGCCTTCCTCCGC
CCTTGCCCCTCCCACTTATTTGTTTCCCTCCTCTGCAGGTCGGATGTTCT
TTCCACCAGTTCCGCTTCGTCAGCTAAACTCCCCTCTTCAGCTGCCACCG
GCATCGATCACCCACGTACTACTCGGTCATTGGACTTCCGTCTTCTTCGC
GTCTTCTCCATCTCACTCCTGATCGCGTTTGTTTCTCGTGCTATGCTTTC
TCCGCACAGCATGGCGGGCGTACCTTATTTCCTATTTTTCATCGGATAGA
AAAATGTTGTACATATGCTTCCTCTGTCCCATATGTTATGGTATTAGATA
CCTTCTTCGGAGGATGGCCCCGCGAGCTCTGTGTCGTCCCCGTTCGCGCC
CCATGCTACACATGTTCCCTCGGATCATGATGCTAGTGTTTGGGCGGTGT
CATCTTCGGATAACCCCGATGGTTCTGTTTTACCTCGGCTACCGGAACAA
GGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1606:24444..25046+

>mRNA_L-elsbetiae_contig1606.4179.1 ID=mRNA_L-elsbetiae_contig1606.4179.1|Name=mRNA_L-elsbetiae_contig1606.4179.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=798bp|location=Sequence derived from alignment at L-elsbetiae_contig1606:24444..25046+ (Laminarionema elsbetiae ELsaHSoW15)
TGCGTATTTCATTCTGCTGCCTATTCCCTTTCCCCCGCGCCTCTCATCTC
CACTCCACCATGTACATCTCCTGCTAAATATCTACATTATGGCAACAATT
TGAATATCCATCTTCAAATTCTTCCCTCTATCTCTCCTGCCTTCCTCCGC
CCTTGCCCCTCCCACTTATTTGTTTCCCTCCTCTGCAGGTCGGATGTTCT
TTCCACCAGTTCCGCTTCGTCAGCTAAACTCCCCTCTTCAGCTGCCACCG
GCATCGATCACCCACGTACTACTCGGTCATTGGACTTCCGTCTTCTTCGC
GTCTTCTCCATCTCACTCCTGATCGCGTTTGTTTCTCGTGCTATGCTTTC
TCCGCACAGCATGGCGGGCGTACCTTATTTCCTATTTTTCATCGGATAGT
GCGTATTTCATTCTGCTGCCTATTCCCTTTCCCCCGCGCCTCTCATCTCC
ACTCCACCATGTACATCTCCTGCTAAATATCTACATTATGGCAACAATTT
GAATATCCATCTTCAAATTCTTCCCTCTATCTCTCCTGCCTTCCTCCGCC
CTTGCCCCTCCCACTTATTTGTTTCCCTCCTCTGCAGGTCGGATGTTCTT
TCCACCAGTTCCGCTTCGTCAGCTAAACTCCCCTCTTCAGCTGCCACCGG
CATCGATCACCCACGTACTACTCGGTCATTGGACTTCCGTCTTCTTCGCG
TCTTCTCCATCTCACTCCTGATCGCGTTTGTTTCTCGTGCTATGCTTTCT
CCGCACAGCATGGCGGGCGTACCTTATTTCCTATTTTTCATCGGATAG
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