mRNA_L-elsbetiae_contig1603.4159.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1603.4159.1
Unique NamemRNA_L-elsbetiae_contig1603.4159.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1603.4159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1603contigL-elsbetiae_contig1603:15005..15442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size438
Cds size411
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815662.0341198-CDS-L-elsbetiae_contig1603:15004..154151622815662.0341198-CDS-L-elsbetiae_contig1603:15004..15415Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1603 15005..15415 +
1691683022.1614218-CDS-L-elsbetiae_contig1603:15004..154151691683022.1614218-CDS-L-elsbetiae_contig1603:15004..15415Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1603 15005..15415 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815662.046488-UTR-L-elsbetiae_contig1603:15415..154421622815662.046488-UTR-L-elsbetiae_contig1603:15415..15442Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1603 15416..15442 +
1691683022.1750057-UTR-L-elsbetiae_contig1603:15415..154421691683022.1750057-UTR-L-elsbetiae_contig1603:15415..15442Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1603 15416..15442 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1603.4159.1prot_L-elsbetiae_contig1603.4159.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1603 15005..15415 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1603.4159.1

>prot_L-elsbetiae_contig1603.4159.1 ID=prot_L-elsbetiae_contig1603.4159.1|Name=mRNA_L-elsbetiae_contig1603.4159.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=137bp
TTSCESGRLICTPANPANSDCCLTIARPTGEHNGVQNVGCYTAPYSRATP
GLCFGAFLPFICFCPPPHGTPGITPWSAARVWGVPGRREPDTEPSGIAGG
CGNLSAFGSSLPYTWRGIDFSSFLVCYFPRFTFCFF*
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mRNA from alignment at L-elsbetiae_contig1603:15005..15442+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1603.4159.1 ID=mRNA_L-elsbetiae_contig1603.4159.1|Name=mRNA_L-elsbetiae_contig1603.4159.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=438bp|location=Sequence derived from alignment at L-elsbetiae_contig1603:15005..15442+ (Laminarionema elsbetiae ELsaHSoW15)
ACTACTTCCTGTGAATCTGGACGCCTAATTTGTACACCTGCCAACCCTGC
GAATTCTGACTGCTGTCTCACAATAGCGAGGCCCACTGGTGAGCACAACG
GTGTCCAGAATGTCGGGTGCTACACGGCACCATATTCTCGGGCCACTCCC
GGTCTCTGCTTTGGTGCCTTCCTGCCTTTTATTTGTTTTTGTCCCCCCCC
GCACGGCACCCCTGGAATCACACCCTGGAGTGCGGCGCGGGTTTGGGGGG
TGCCTGGTCGGCGAGAACCCGACACGGAACCCTCCGGCATTGCAGGCGGG
TGTGGGAACCTTTCGGCTTTCGGCAGCTCTCTTCCCTATACCTGGCGTGG
TATCGATTTTTCTAGCTTTCTTGTATGTTATTTTCCGAGGTTTACCTTTT
GCTTTTTTTAGTGCCAGCGAGACGCAAGACCCCTCCGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1603:15005..15442+

>mRNA_L-elsbetiae_contig1603.4159.1 ID=mRNA_L-elsbetiae_contig1603.4159.1|Name=mRNA_L-elsbetiae_contig1603.4159.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=822bp|location=Sequence derived from alignment at L-elsbetiae_contig1603:15005..15442+ (Laminarionema elsbetiae ELsaHSoW15)
ACTACTTCCTGTGAATCTGGACGCCTAATTTGTACACCTGCCAACCCTGC
GAATTCTGACTGCTGTCTCACAATAGCGAGGCCCACTGGTGAGCACAACG
GTGTCCAGAATGTCGGGTGCTACACGGCACCATATTCTCGGGCCACTCCC
GGTCTCTGCTTTGGTGCCTTCCTGCCTTTTATTTGTTTTTGTCCCCCCCC
GCACGGCACCCCTGGAATCACACCCTGGAGTGCGGCGCGGGTTTGGGGGG
TGCCTGGTCGGCGAGAACCCGACACGGAACCCTCCGGCATTGCAGGCGGG
TGTGGGAACCTTTCGGCTTTCGGCAGCTCTCTTCCCTATACCTGGCGTGG
TATCGATTTTTCTAGCTTTCTTGTATGTTATTTTCCGAGGTTTACCTTTT
GCTTTTTTTAGACTACTTCCTGTGAATCTGGACGCCTAATTTGTACACCT
GCCAACCCTGCGAATTCTGACTGCTGTCTCACAATAGCGAGGCCCACTGG
TGAGCACAACGGTGTCCAGAATGTCGGGTGCTACACGGCACCATATTCTC
GGGCCACTCCCGGTCTCTGCTTTGGTGCCTTCCTGCCTTTTATTTGTTTT
TGTCCCCCCCCGCACGGCACCCCTGGAATCACACCCTGGAGTGCGGCGCG
GGTTTGGGGGGTGCCTGGTCGGCGAGAACCCGACACGGAACCCTCCGGCA
TTGCAGGCGGGTGTGGGAACCTTTCGGCTTTCGGCAGCTCTCTTCCCTAT
ACCTGGCGTGGTATCGATTTTTCTAGCTTTCTTGTATGTTATTTTCCGAG
GTTTACCTTTTGCTTTTTTTAG
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