mRNA_L-elsbetiae_contig16023.4158.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16023.4158.1
Unique NamemRNA_L-elsbetiae_contig16023.4158.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16023.4158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16023contigL-elsbetiae_contig16023:987..1961 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size975
Cds size519
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815661.9775808-UTR-L-elsbetiae_contig16023:986..14421622815661.9775808-UTR-L-elsbetiae_contig16023:986..1442Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16023 987..1442 +
1691683022.141631-UTR-L-elsbetiae_contig16023:986..14421691683022.141631-UTR-L-elsbetiae_contig16023:986..1442Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16023 987..1442 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815661.992284-CDS-L-elsbetiae_contig16023:1442..19611622815661.992284-CDS-L-elsbetiae_contig16023:1442..1961Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16023 1443..1961 +
1691683022.1516824-CDS-L-elsbetiae_contig16023:1442..19611691683022.1516824-CDS-L-elsbetiae_contig16023:1442..1961Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16023 1443..1961 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16023.4158.1prot_L-elsbetiae_contig16023.4158.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16023 1443..1961 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16023.4158.1

>prot_L-elsbetiae_contig16023.4158.1 ID=prot_L-elsbetiae_contig16023.4158.1|Name=mRNA_L-elsbetiae_contig16023.4158.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=173bp
MPQKCSHQGCPKRSSYGKAGGKAEYCHDHAKDRMVDMRSKRCTHHGCTKR
PSFGIAGSKAEYCRDHAKDGMVNVRSKRCTYHGCTKHPSFGKAGGKAEYC
RDHAKDGMVYVNNRKRCTHQGCIKQPSYGKAGGKVEYCRGHAKDGMVHVK
SKRRTHHGCTKQPCYGLAGGKAE
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mRNA from alignment at L-elsbetiae_contig16023:987..1961+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16023.4158.1 ID=mRNA_L-elsbetiae_contig16023.4158.1|Name=mRNA_L-elsbetiae_contig16023.4158.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=975bp|location=Sequence derived from alignment at L-elsbetiae_contig16023:987..1961+ (Laminarionema elsbetiae ELsaHSoW15)
CCAGTCGGTAACGACGTGGCTACGTGTAAATACGATCCTTGCAGCCAAGC
TAGTTAGCTCCATTTGGTTCCCGAGTACGGGAGAGAGGCGCAGCCTTCCG
GGTGTCGGAAAAGGATTGATTTCAAGCCAAAAGTCTTGACTATCTACTGC
TCTCGTACCTCTCAGAGCCTCAGTTCCGGCTTGGATCAATACACTCTTCA
GTTCCACCCTATCCCGTAGTAGCGGTTCTGTTCTGGGTTCTGGGTATGGC
TGGTATCTCGCCGCCAGTTGAAGTGGCAGTTACTGAAACACTATCCCCTA
CAGAATAACGCCTGCTTCAGAATCACTTGAGGGTGGTTCCACCGCACCTA
CCATATCGTGGCCGGCGTAGCTTTGGCTCCCCACTCTTCCGAGCTTGAAC
GATTAAAGTCAGGGACTGGATACGTGCAAGAAGGGCCTGATCGACAGAAC
AGAAGGATGCCCCAAAAGTGCTCTCACCAGGGATGCCCCAAGCGGTCGTC
GTACGGTAAGGCTGGCGGCAAGGCGGAGTACTGCCATGACCATGCCAAGG
ACAGAATGGTGGACATGAGGAGCAAGAGGTGCACCCACCACGGTTGTACC
AAGCGGCCGTCATTCGGCATTGCTGGCAGCAAGGCCGAGTACTGCCGTGA
CCATGCCAAAGACGGGATGGTGAACGTGAGGAGCAAGAGGTGCACCTACC
ACGGTTGTACGAAGCACCCGTCCTTCGGTAAGGCTGGTGGCAAGGCGGAG
TACTGCCGGGACCATGCCAAGGACGGGATGGTGTACGTGAACAACAGGAA
GAGATGCACTCATCAGGGTTGTATCAAGCAGCCGTCGTACGGCAAGGCTG
GCGGCAAGGTGGAATACTGCCGTGGTCATGCCAAGGATGGGATGGTGCAC
GTGAAGAGCAAGAGGCGCACCCACCACGGTTGCACCAAGCAGCCGTGCTA
CGGCCTTGCTGGCGGCAAGGCGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16023:987..1961+

>mRNA_L-elsbetiae_contig16023.4158.1 ID=mRNA_L-elsbetiae_contig16023.4158.1|Name=mRNA_L-elsbetiae_contig16023.4158.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1038bp|location=Sequence derived from alignment at L-elsbetiae_contig16023:987..1961+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCCAAAAGTGCTCTCACCAGGGATGCCCCAAGCGGTCGTCGTACGG
TAAGGCTGGCGGCAAGGCGGAGTACTGCCATGACCATGCCAAGGACAGAA
TGGTGGACATGAGGAGCAAGAGGTGCACCCACCACGGTTGTACCAAGCGG
CCGTCATTCGGCATTGCTGGCAGCAAGGCCGAGTACTGCCGTGACCATGC
CAAAGACGGGATGGTGAACGTGAGGAGCAAGAGGTGCACCTACCACGGTT
GTACGAAGCACCCGTCCTTCGGTAAGGCTGGTGGCAAGGCGGAGTACTGC
CGGGACCATGCCAAGGACGGGATGGTGTACGTGAACAACAGGAAGAGATG
CACTCATCAGGGTTGTATCAAGCAGCCGTCGTACGGCAAGGCTGGCGGCA
AGGTGGAATACTGCCGTGGTCATGCCAAGGATGGGATGGTGCACGTGAAG
AGCAAGAGGCGCACCCACCACGGTTGCACCAAGCAGCCGTGCTACGGCCT
TGCTGGCGGCAAGGCGGAGATGCCCCAAAAGTGCTCTCACCAGGGATGCC
CCAAGCGGTCGTCGTACGGTAAGGCTGGCGGCAAGGCGGAGTACTGCCAT
GACCATGCCAAGGACAGAATGGTGGACATGAGGAGCAAGAGGTGCACCCA
CCACGGTTGTACCAAGCGGCCGTCATTCGGCATTGCTGGCAGCAAGGCCG
AGTACTGCCGTGACCATGCCAAAGACGGGATGGTGAACGTGAGGAGCAAG
AGGTGCACCTACCACGGTTGTACGAAGCACCCGTCCTTCGGTAAGGCTGG
TGGCAAGGCGGAGTACTGCCGGGACCATGCCAAGGACGGGATGGTGTACG
TGAACAACAGGAAGAGATGCACTCATCAGGGTTGTATCAAGCAGCCGTCG
TACGGCAAGGCTGGCGGCAAGGTGGAATACTGCCGTGGTCATGCCAAGGA
TGGGATGGTGCACGTGAAGAGCAAGAGGCGCACCCACCACGGTTGCACCA
AGCAGCCGTGCTACGGCCTTGCTGGCGGCAAGGCGGAG
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