mRNA_L-elsbetiae_contig16021.4156.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16021.4156.1
Unique NamemRNA_L-elsbetiae_contig16021.4156.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16021.4156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16021contigL-elsbetiae_contig16021:2078..2721 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size375
Cds size222
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16021.4156.1prot_L-elsbetiae_contig16021.4156.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16021 2300..2664 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815661.8589938-UTR-L-elsbetiae_contig16021:2077..21271622815661.8589938-UTR-L-elsbetiae_contig16021:2077..2127Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16021 2078..2127 -
1691683022.0769548-UTR-L-elsbetiae_contig16021:2077..21271691683022.0769548-UTR-L-elsbetiae_contig16021:2077..2127Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16021 2078..2127 -
1622815661.869154-UTR-L-elsbetiae_contig16021:2253..22991622815661.869154-UTR-L-elsbetiae_contig16021:2253..2299Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16021 2254..2299 -
1691683022.087899-UTR-L-elsbetiae_contig16021:2253..22991691683022.087899-UTR-L-elsbetiae_contig16021:2253..2299Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16021 2254..2299 -
1622815661.9016497-UTR-L-elsbetiae_contig16021:2664..27211622815661.9016497-UTR-L-elsbetiae_contig16021:2664..2721Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16021 2665..2721 -
1691683022.1210132-UTR-L-elsbetiae_contig16021:2664..27211691683022.1210132-UTR-L-elsbetiae_contig16021:2664..2721Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16021 2665..2721 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815661.8806555-CDS-L-elsbetiae_contig16021:2299..23191622815661.8806555-CDS-L-elsbetiae_contig16021:2299..2319Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16021 2300..2319 -
1691683022.1014142-CDS-L-elsbetiae_contig16021:2299..23191691683022.1014142-CDS-L-elsbetiae_contig16021:2299..2319Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16021 2300..2319 -
1622815661.8912113-CDS-L-elsbetiae_contig16021:2462..26641622815661.8912113-CDS-L-elsbetiae_contig16021:2462..2664Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16021 2463..2664 -
1691683022.1100357-CDS-L-elsbetiae_contig16021:2462..26641691683022.1100357-CDS-L-elsbetiae_contig16021:2462..2664Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16021 2463..2664 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16021.4156.1

>prot_L-elsbetiae_contig16021.4156.1 ID=prot_L-elsbetiae_contig16021.4156.1|Name=mRNA_L-elsbetiae_contig16021.4156.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=74bp
MRQSSATTPSADEGRVEREYRDTPNQEGAAALERAALTPQQGRRRAAARE
RKLLNGVRGRPMPDRQKGCGRPD*
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mRNA from alignment at L-elsbetiae_contig16021:2078..2721-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16021.4156.1 ID=mRNA_L-elsbetiae_contig16021.4156.1|Name=mRNA_L-elsbetiae_contig16021.4156.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=644bp|location=Sequence derived from alignment at L-elsbetiae_contig16021:2078..2721- (Laminarionema elsbetiae ELsaHSoW15)
ACTGTCTCATGGAACGCGTCAGATATCCTTTGGGGTCTGTTGACTCAAAC
GCAGTCCATGAGGCAGAGCTCAGCAACGACACCAAGCGCAGACGAAGGCC
GTGTAGAGCGGGAGTACCGAGACACCCCGAACCAAGAGGGAGCTGCTGCT
CTTGAGAGAGCTGCTCTCACCCCGCAGCAAGGCAGAAGGAGAGCTGCTGC
TCGTGAGAGAAAGCTGCTCAATGGCGTCAGAGGGAGGCCGATGCCAGACA
GGCAGAAAGGTGCGTTGGTGCGTCGATTGCTTGCTTCCAGATTTTACAAC
GAACGGTGACTTTCTCTCAAACAGGGGTAACTCACACAAAGGCACACAAG
AGCACAGCACAGGATTATTGCTCACACAACCCTCTCACCCACACACACAC
AGGTTGCGGGCGGCCCGACTAAGATCGGCTGCTAGGCGAGAGAGTTAGAG
CCACCGCAAGCGAGAGAGGTGAGGTGTGTACGTGTGTACCTGTGTATCCT
ATCGGATGCATCTTGGGTTCGTTGCTTGCAAAAATGCTTTTAACCGCCGC
ATGTTACAACTTGAGAGTAAAACCTCCCGGACCCCATTTCGCAGGCTGGC
GGAGCACTGTGTGATCCGAGCGTTGAGACACCACGGCCGCGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16021:2078..2721-

>mRNA_L-elsbetiae_contig16021.4156.1 ID=mRNA_L-elsbetiae_contig16021.4156.1|Name=mRNA_L-elsbetiae_contig16021.4156.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=444bp|location=Sequence derived from alignment at L-elsbetiae_contig16021:2078..2721- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGGCAGAGCTCAGCAACGACACCAAGCGCAGACGAAGGCCGTGTAGA
GCGGGAGTACCGAGACACCCCGAACCAAGAGGGAGCTGCTGCTCTTGAGA
GAGCTGCTCTCACCCCGCAGCAAGGCAGAAGGAGAGCTGCTGCTCGTGAG
AGAAAGCTGCTCAATGGCGTCAGAGGGAGGCCGATGCCAGACAGGCAGAA
AGATGAGGCAGAGCTCAGCAACGACACCAAGCGCAGACGAAGGCCGTGTA
GAGCGGGAGTACCGAGACACCCCGAACCAAGAGGGAGCTGCTGCTCTTGA
GAGAGCTGCTCTCACCCCGCAGCAAGGCAGAAGGAGAGCTGCTGCTCGTG
AGAGAAAGCTGCTCAATGGCGTCAGAGGGAGGCCGATGCCAGACAGGCAG
AAAGGTTGCGGGCGGCCCGACTAAGTTGCGGGCGGCCCGACTAA
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