mRNA_L-elsbetiae_contig1041.415.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1041.415.1 vs. uniprot
Match: A0A6H5K1B7_9PHAE (Zn(2)-C6 fungal-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1B7_9PHAE) HSP 1 Score: 535 bits (1378), Expect = 5.170e-174 Identity = 405/830 (48.80%), Postives = 465/830 (56.02%), Query Frame = 1 Query: 148 MVHPDRGFADPKEGFRRGSRGDYRKSCDDCTASKTKCQGSIPCDRCKKRRIECKFSKRRRCGPKARAEDEKRARTSADGAEAHPDHLSSYGSPKSSTSARQPXXXXXXXXXXS--SIGLESGXXXXXXXXXXXXXXXXXXXXXDLPPTDPPKFCGPLNSDGLSALAELISPTLSDTGGSGSSNIXXXXXXXXXXXXXXXXXSGCHGGVDTSSAYGGHHAPPPSGNRYGPLPSMGADGASPFLDGRGTSPPGXXXXXXXXXXXXXXXXXAALSSLSAAPDHGMRQASAHRARGGGLKASL----------------------------SAPSGSMVPCPPQDLPARAKSLGELPAVGGXXXXXXXG---------HMGFYPEGAAMAGPTGNDLMGLCGGGXXXXXXXXXXXXXXQRATVGLTGVSSRGPLPMTLDARSRAHLRTFMRTVGSLVHLPGNDAIRGAVFSD--GYDSEEMPDAAPVGSGAGARAGGVENGAGACGTKR-GQPAAGDGDGRNSGGVVDTLAEACRAEAWAAAAVGAQFSGAGEQEGNEYVSRSLRAISQCLDAPLPEVAAVMILLALFWTHSMDTRKVARYFGFAQQVGLELGDRMPEGLRHTMAFVSSLVTMTLNLDQGPSYALEVKPHAVWGVSLRNSSSRPGVEPFILGLTAATMACNEMLLDGAGRASQARVRAVARMPVDGGGLPLPPVPLPSQVLTDLLATAATALVKANEEDGIINPEHMLAILHGLKGYTHAARGELEEAEAAARLMLEIIDRHAAVLHLPLTFTLAEASRRLLKTAAERSARRPDPGLHSAALHGARATLVFARP 2511 M+HPDR DP EG+RRGSRG RKSCD CT+SKTKCQGSIPCDRCKKRRIECKFSKRRRCGPKARAEDEKR RT D + L+ SP+ + Q S IG +G D P PKF GP+ SD LS L ELI+PTLSDTGGSGSS S CHGG + +AY H A NRY +P + A+G SPFL G XXXXXXXXXXXXXXXXX + PS CP +DLPARAKS+G+ P G XXXX GF+ EG+ M G G QR + RG LPMTLD RS+ HL+TFMRTVGSL+ LPG DAIR AVF D G D ++ PDA P+ A G E+ G KR G+P A + D GG+VD AEACRAEAWAAAAVGAQFSGA E+E +Y SR++RA+++CLDAPLPEVA+VM+L LFW HSM+TRKV+RYFGFAQQVGLELG MPE LRHT+AFV+ LVTMTLNLDQ S++L+VK AVWGVSLR++S RPGV+PF+L LTA T+ACNEML DGAGR Q + A GGL + A K NE + P H YTHAARGE E+AEA+ RLML IIDRHAAVLHLPLTFTLAEASRRLL AAERS+R G+H AL A L FARP Sbjct: 1 MIHPDRVAPDPTEGWRRGSRGPLRKSCDTCTSSKTKCQGSIPCDRCKKRRIECKFSKRRRCGPKARAEDEKRPRTGMDAQQQA--GLAIKDSPEHKPAMHQQHAGVPHPPSPSLPPIGTIAGLDSSSNNMTGGGG--------DGLPVSNPKFGGPMTSDSLSGLVELIAPTLSDTGGSGSS-------ASITASINASISSSCHGGGE--AAYSHHAAAVSGNNRYTAIPGLHAEGVSPFLGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPPS-----CPVRDLPARAKSMGDTPGGFGQAGXXXXXXXXXXXXXVQAGFFSEGS-MENTFMRQQDGGSEGRQHASSALGAPLPQQQR-------LPPRGSLPMTLDGRSKTHLKTFMRTVGSLILLPGADAIRSAVFGDASGGDPKQSPDA-PIA----ADPGSAED----VGVKREGRPVAAEED----GGIVDVFAEACRAEAWAAAAVGAQFSGASEEECKDYQSRAMRALARCLDAPLPEVASVMLLFCLFWMHSMETRKVSRYFGFAQQVGLELGSLMPEELRHTIAFVACLVTMTLNLDQVGSFSLQVKDQAVWGVSLRDNSCRPGVDPFVLALTALTVACNEMLHDGAGRGGQGAIGA--------GGL-----------------SPRVAPSKNNEYPTL--PAHA--------AYTHAARGEAEDAEASGRLMLAIIDRHAAVLHLPLTFTLAEASRRLLAAAAERSSRPTPEGVHVEALGAAVTKLSFARP 750
BLAST of mRNA_L-elsbetiae_contig1041.415.1 vs. uniprot
Match: D8LQH3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQH3_ECTSI) HSP 1 Score: 440 bits (1131), Expect = 1.010e-138 Identity = 255/402 (63.43%), Postives = 296/402 (73.63%), Query Frame = 1 Query: 1309 RGPLPMTLDARSRAHLRTFMRTVGSLVHLPGNDAIRGAVFSD--GYDSEEMPDAAPVGSGAGARAGGVENGAGACGTKRGQPAAGDGDGRNSGGVVDTLAEACRAEAWAAAAVGAQFSGAGEQEGNEYVSRSLRAISQCLDAPLPEVAAVMILLALFWTHSMDTRKVARYFGFAQQVGLELGDRMPEGLRHTMAFVSSLVTMTLNLDQGPSYALEVKPHAVWGVSLRNSSSRPGVEPFILGLTAATMACNEMLLDGAGRASQARVRAVARMPVDGGGLPLPPVPLPSQVLTDLLATAATALVKANEEDGIINPEHMLAILHGLKGYTHAARGELEEAEAAARLMLEIIDRHAAVLHLPLTFTLAEASRRLLKTAAERSARRPDPGLHSAALHGARATLVFAR 2508 R LPMTLD RS+ HL+TFMRTVGSL+ LPG AIR AVF D G D E++PDA A GV+ + G+P A + D GG+VD AEACRAEAWAAAAVGAQFSGA E+E +Y SR++ A+S+CLDAPLPEVA+VM+LL LFW HSM+TRKVARYFGFAQQVGLELG MPE LRHT+AFV+ LVTMTLNLDQ S++L+VK AVWGVSLR++S RPGV+PF+L LTA T+ACNEML DGAGR Q + A GGL P PS+VLTDLL AA AL +A+ DG NPEH+LA+LHGL+ +THAARGE E+AEA+ RLML IIDRHAAVLHLPLTFTLAEASRRLL AAERS+R G+H AL A L FAR Sbjct: 66 RRSLPMTLDGRSKTHLKTFMRTVGSLILLPGAGAIRSAVFGDAGGGDPEQLPDAPTAADPGSAEDVGVK--------REGRPVAAEED----GGIVDVFAEACRAEAWAAAAVGAQFSGASEEECKDYQSRAMGALSRCLDAPLPEVASVMLLLCLFWMHSMETRKVARYFGFAQQVGLELGSLMPEELRHTIAFVACLVTMTLNLDQVGSFSLQVKDQAVWGVSLRDNSCRPGVDPFVLALTALTVACNEMLHDGAGRGGQGAIGA--------GGLS--PRVAPSKVLTDLLTKAAKAL-EADARDGNRNPEHVLALLHGLRAFTHAARGEAEDAEASGRLMLAIIDRHAAVLHLPLTFTLAEASRRLLAAAAERSSRPAPEGVHVEALGAAVTKLSFAR 444 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1041.415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1041.415.1 >prot_L-elsbetiae_contig1041.415.1 ID=prot_L-elsbetiae_contig1041.415.1|Name=mRNA_L-elsbetiae_contig1041.415.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=879bp RAQKPDPTFVSRHTWNSNAPDVPTRQKRTAVAPAYMTEKPGTDDDKTVLMback to top mRNA from alignment at L-elsbetiae_contig1041:255..9376- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1041.415.1 ID=mRNA_L-elsbetiae_contig1041.415.1|Name=mRNA_L-elsbetiae_contig1041.415.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=9122bp|location=Sequence derived from alignment at L-elsbetiae_contig1041:255..9376- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1041:255..9376- >mRNA_L-elsbetiae_contig1041.415.1 ID=mRNA_L-elsbetiae_contig1041.415.1|Name=mRNA_L-elsbetiae_contig1041.415.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5274bp|location=Sequence derived from alignment at L-elsbetiae_contig1041:255..9376- (Laminarionema elsbetiae ELsaHSoW15)back to top |