mRNA_L-elsbetiae_contig10409.414.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10409.414.1
Unique NamemRNA_L-elsbetiae_contig10409.414.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10409.414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10409contigL-elsbetiae_contig10409:5156..5677 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size522
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10409.414.1prot_L-elsbetiae_contig10409.414.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10409 5207..5542 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815266.3915122-UTR-L-elsbetiae_contig10409:5155..52061622815266.3915122-UTR-L-elsbetiae_contig10409:5155..5206Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10409 5156..5206 +
1691682805.9073129-UTR-L-elsbetiae_contig10409:5155..52061691682805.9073129-UTR-L-elsbetiae_contig10409:5155..5206Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10409 5156..5206 +
1622815266.4167728-UTR-L-elsbetiae_contig10409:5542..56771622815266.4167728-UTR-L-elsbetiae_contig10409:5542..5677Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10409 5543..5677 +
1691682805.9314816-UTR-L-elsbetiae_contig10409:5542..56771691682805.9314816-UTR-L-elsbetiae_contig10409:5542..5677Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10409 5543..5677 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815266.4018672-CDS-L-elsbetiae_contig10409:5206..55421622815266.4018672-CDS-L-elsbetiae_contig10409:5206..5542Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10409 5207..5542 +
1691682805.9171782-CDS-L-elsbetiae_contig10409:5206..55421691682805.9171782-CDS-L-elsbetiae_contig10409:5206..5542Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10409 5207..5542 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10409.414.1

>prot_L-elsbetiae_contig10409.414.1 ID=prot_L-elsbetiae_contig10409.414.1|Name=mRNA_L-elsbetiae_contig10409.414.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
MASPQLSDAQLAAATPVADGTASQTLPCFDQPGTGTRNSPAPSRPELVLG
RVYTRDKESLQGKSTTPPCSCWRCQSSRPWAWRRRPTWRTSSTRGESWSV
ELKVRRQQKRR*
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mRNA from alignment at L-elsbetiae_contig10409:5156..5677+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10409.414.1 ID=mRNA_L-elsbetiae_contig10409.414.1|Name=mRNA_L-elsbetiae_contig10409.414.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=522bp|location=Sequence derived from alignment at L-elsbetiae_contig10409:5156..5677+ (Laminarionema elsbetiae ELsaHSoW15)
CCTCCCCAACCCCAACGGAGTGAAAGCACGCGATAAGAACAACAGGTTAC
CATGGCCAGCCCCCAACTGAGCGATGCCCAGCTGGCGGCTGCCACCCCAG
TCGCCGACGGGACGGCGTCACAAACGCTCCCGTGTTTCGACCAGCCGGGA
ACCGGCACTCGCAACTCACCTGCTCCCAGCCGTCCGGAACTAGTCCTGGG
CCGCGTGTACACGCGCGACAAAGAGTCGCTGCAGGGCAAAAGCACAACCC
CGCCCTGCTCTTGCTGGCGATGCCAATCGTCAAGGCCTTGGGCGTGGCGT
CGGAGACCCACATGGAGGACCTCTTCAACGAGGGGGGAAAGCTGGAGCGT
GGAGCTCAAGGTTCGGAGGCAGCAAAAAAGGCGATAGGAGCACGCGCCTT
CTTCACGGAAGTGCTGGATCTGCTCCAAGGCCACCTTTACGTGAGTGGGG
AGAACGTGCTCCTGCCGAGCCCGGCGGCGGCAGGCAAGGACCCACTCGGG
GGAGCGGGCGCGGGCTCAATTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10409:5156..5677+

>mRNA_L-elsbetiae_contig10409.414.1 ID=mRNA_L-elsbetiae_contig10409.414.1|Name=mRNA_L-elsbetiae_contig10409.414.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig10409:5156..5677+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCAGCCCCCAACTGAGCGATGCCCAGCTGGCGGCTGCCACCCCAGT
CGCCGACGGGACGGCGTCACAAACGCTCCCGTGTTTCGACCAGCCGGGAA
CCGGCACTCGCAACTCACCTGCTCCCAGCCGTCCGGAACTAGTCCTGGGC
CGCGTGTACACGCGCGACAAAGAGTCGCTGCAGGGCAAAAGCACAACCCC
GCCCTGCTCTTGCTGGCGATGCCAATCGTCAAGGCCTTGGGCGTGGCGTC
GGAGACCCACATGGAGGACCTCTTCAACGAGGGGGGAAAGCTGGAGCGTG
GAGCTCAAGGTTCGGAGGCAGCAAAAAAGGCGATAGATGGCCAGCCCCCA
ACTGAGCGATGCCCAGCTGGCGGCTGCCACCCCAGTCGCCGACGGGACGG
CGTCACAAACGCTCCCGTGTTTCGACCAGCCGGGAACCGGCACTCGCAAC
TCACCTGCTCCCAGCCGTCCGGAACTAGTCCTGGGCCGCGTGTACACGCG
CGACAAAGAGTCGCTGCAGGGCAAAAGCACAACCCCGCCCTGCTCTTGCT
GGCGATGCCAATCGTCAAGGCCTTGGGCGTGGCGTCGGAGACCCACATGG
AGGACCTCTTCAACGAGGGGGGAAAGCTGGAGCGTGGAGCTCAAGGTTCG
GAGGCAGCAAAAAAGGCGATAG
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