mRNA_L-elsbetiae_contig15994.4130.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15994.4130.1
Unique NamemRNA_L-elsbetiae_contig15994.4130.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig15994.4130.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE)

HSP 1 Score: 358 bits (920), Expect = 1.100e-114
Identity = 180/279 (64.52%), Postives = 216/279 (77.42%), Query Frame = 3
Query:    3 RVWDDTTPDPSFFCDAARLLTPPFSEGRHLAAMKLTAEEAAYLPANTGATAPTLDEEVNEKLDEAWAEIKKRAVQAVKTQQDRPEVGGGSEGPFKRARTHTGRPARKQAEEDPFAVFGRTDVVDDDETE*DVVEQEIGSEIMRYKGVFIAPKDLPPSEVLMYWGTKGKFAFASLKYVAQQTFGNQASAAPVERDFSGCGLFLVPNRSRVEEYWVEMVMFLKANYQFIPEYGDIPNIDSRDMRKCLPAKFNGTNEDLLKAEMALDPLSNDTPPNKADIGV 839
            RVWD+ T DP FFC AA LLTPPFSEG H+AAMKL A +  YLP+ + ATAPT+DEEV  KLDE W EIK+RAV+AVK +Q     G G+ G FKRART      R+  + D FA FGR+    ++  + D VEQE+ +EIMRYKGVF+   DL P+EVL YW T G+ +F +LK+VAQQTFG+Q SAAPVERDFSGCGLFLVPNRSRVEEYWVEMVMFL AN++FIP+Y +IP+IDS+D+RKCLPAKF GT+EDLL AEMALDPL N+TPP + D G+
Sbjct:  574 RVWDENTLDPPFFCHAACLLTPPFSEGLHVAAMKLAAGDDEYLPSTSTATAPTMDEEVTAKLDETWKEIKERAVEAVKKEQAAASSGPGAAGVFKRARTAGXXXRRRPVDGDEFAAFGRSVGGVEESKQGDAVEQEVANEIMRYKGVFMTSNDLHPTEVLSYWATTGRHSFPALKHVAQQTFGSQPSAAPVERDFSGCGLFLVPNRSRVEEYWVEMVMFLNANFKFIPKYDNIPSIDSKDIRKCLPAKFKGTDEDLLSAEMALDPLRNNTPPGEDDTGL 852          
BLAST of mRNA_L-elsbetiae_contig15994.4130.1 vs. uniprot
Match: A0A6H5K8W6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W6_9PHAE)

HSP 1 Score: 306 bits (785), Expect = 2.650e-98
Identity = 169/282 (59.93%), Postives = 198/282 (70.21%), Query Frame = 3
Query:    3 RVWDDTTPDPSFFCDAARLLTPPFSEGRHLAAMKLTAEEAAYLPANTGATAPTLDEEVNEKLDEAWAEIKKRAVQAVKTQQDRP---EVGGGSEGPFKRARTHTGRPARKQAEEDPFAVFGRTDVVDDDETE*DVVEQEIGSEIMRYKGVFIAPKDLPPSEVLMYWGTKGKFAFASLKYVAQQTFGNQASAAPVERDFSGCGLFLVPNRSRVEEYWVEMVMFLKANYQFIPEYGDIPNIDSRDMRKCLPAKFNGTNEDLLKAEMALDPLSNDTPPNKADIGV 839
            RVW++ +P+PSFFCDAA LLTPPFSEGRH++AM+LTAE+A YLP ++   APT D EV  KLD AW EI+KRAV++VKT+QDR    + GGG  GPFKRA T  GR AR   + D F   GRT  V+         E    +   R             SEVL YWG  GK AF SLK+VAQQTFGNQASAAPVERDFSGCGLF+VPNRSRV+EYWVEMVMFLKAN+       +IP ID +D+RKCLPAKF GT+ED L AEMAL PLSND PP +A +G+
Sbjct:  252 RVWNEQSPNPSFFCDAACLLTPPFSEGRHVSAMRLTAEDAMYLPNSSNIIAPTADFEVTAKLDWAWTEIRKRAVESVKTEQDRAGGSDAGGGG-GPFKRAHTSGGRSARNPTDPDEFTDSGRTAAVE---------EARRMTSCSR-------------SEVLSYWGRTGKHAFPSLKHVAQQTFGNQASAAPVERDFSGCGLFMVPNRSRVDEYWVEMVMFLKANFNSSRRI-NIPQIDPKDIRKCLPAKFEGTDEDHLNAEMALYPLSNDAPPAEAGLGL 509          
BLAST of mRNA_L-elsbetiae_contig15994.4130.1 vs. uniprot
Match: A0A6H5JB08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB08_9PHAE)

HSP 1 Score: 300 bits (767), Expect = 2.050e-94
Identity = 158/254 (62.20%), Postives = 189/254 (74.41%), Query Frame = 3
Query:    3 RVWDDTTPDPSFFCDAARLLTPPFSEGRHLAAMKLTAEEAAYLPANTGATAPTLDEEVNEKLDEAWAEIKKRAVQAVKTQQDRPEVGGGSEG--PFKRARTHTGRPARKQAEEDPFAVFGRTDVV--DDDETE*DVVEQEIGSEIMRYKGVFIAPKDLPPSEVLMYWGTKGKFAFASLKYVAQQTFGNQASAAPVERDFSGCGLFLVPNRSRVEEYWVEMVMFLKANYQFIPEYGDIPNIDSRDMRKCLPAKFN 752
             VWDD+  DPS FCDAA LLTPPFSEG +L+AMKLTAEE   L A +   APT DE+V EKL+  WAEIKKRAV AVKT+Q+R    GG +G  PFKRART    P+R++  ED F++FG  +V     D  + D VE+E+  EI+RYKGVF+ P DLPPS+VL YW   GK  F SLKYVAQQTFG+QASAA +ERDFS CGLF   NRSR EEYW+EMVM LK NY+ IP+Y DIP+IDS+D+RKCLPAK++
Sbjct:  330 HVWDDSCLDPSMFCDAACLLTPPFSEGNYLSAMKLTAEEDDNLAAVSTVVAPTSDEDVREKLEGIWAEIKKRAVTAVKTEQNRVAGEGGGQGSDPFKRARTSGAVPSRRKNYEDDFSMFGCNEVAPSQSDGGDVDFVEEEVSGEIIRYKGVFMKPIDLPPSDVLAYWNKVGKQMFPSLKYVAQQTFGSQASAAQIERDFSHCGLFSTGNRSRAEEYWLEMVMVLKGNYELIPDYKDIPSIDSKDIRKCLPAKYS 583          
BLAST of mRNA_L-elsbetiae_contig15994.4130.1 vs. uniprot
Match: A0A6H5KFQ8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFQ8_9PHAE)

HSP 1 Score: 267 bits (682), Expect = 7.840e-83
Identity = 151/284 (53.17%), Postives = 183/284 (64.44%), Query Frame = 3
Query:    3 RVWDDTTPDPSFFCDAARLLTPPFSEGRHLAAMKLTAEEAAYLPANTGATAPTLDEEVNEKLDEAWAEIKKRAVQAVKTQQDRPEV---GGGSEGPFKRARTHTGRPARKQAEEDPFAVFGRTDVVDDDETE*DVVEQEIGSEIMRYKGVFIAPKDLPPSEVLMYWGTKGKFAFASLKYVAQQTFGNQASAAPVERDFSGCGLFLVPNRSRVEEYWVEMVMFLKANYQFIPEYGDIPNIDSRDMRKCLPAKFNGTNEDLLKAEMALDPLSNDTPPNKADIGVDG 845
            R W     DPSF  D++ LLTPP+S G H++AMKLT EE  YLP       PT DE+V +K  EAW  IKKRA+QAVK  Q +      GGG  GPFKRART     AR  A ED FAV      V+   +  D  +  +  EI R + + +   DL P +VL YW   G+ AF +L YVAQQ FG+QA AA +ERDFS  GL    NR+R++EYWVEMV+FLKAN+Q IP Y DIPN+DS+ +R+CLPAKF GTNE LL AEMALDPL N TPPN + IG +G
Sbjct:  229 RYWAGCV-DPSFV-DSSCLLTPPYSSGIHISAMKLTEEEGDYLPTGLTVLTPTTDEDVEDKKAEAWGMIKKRAIQAVKEDQAQANGSGDGGGDAGPFKRARTSGNGSARNDAGEDHFAVLCTAGAVEQSGSG-DDGDLSVAGEIQRSRALQMNSSDLQPRDVLNYWKQSGRHAFPALNYVAQQRFGSQAYAAQIERDFSTGGLLGASNRNRLDEYWVEMVLFLKANFQCIPGYDDIPNMDSKSIRECLPAKFKGTNEYLLDAEMALDPLENKTPPNTSAIGDNG 509          
BLAST of mRNA_L-elsbetiae_contig15994.4130.1 vs. uniprot
Match: A0A6H5JZQ5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ5_9PHAE)

HSP 1 Score: 223 bits (567), Expect = 5.370e-68
Identity = 128/288 (44.44%), Postives = 176/288 (61.11%), Query Frame = 3
Query:    3 RVWDDTTPDPSFFCDAARLLTPPFSEGRHLAAMKLTAEEAAYLPANTGATAPTLDEEVNEKLDEAWAEIKKRAVQAVKTQQDRPE-VGGGSEGPFKRAR--THTGRPARKQAEEDPFAVFGR------TDVVDDDETE*DVVEQEIGSEIMRYKGVFIAPKDLPPSEVLMYWGTKGKFAFASLKYVAQQTFGNQASAAPVERDFSGCGLFLVPNRSRVEEYWVEMVMFLKANYQFIPEYGDIPNIDSRDMRKCLPAKFNGTNEDLLKAEMALDPLSNDTPPNKADIGV 839
            RVWDD + DPS F DAA LLTPPF+ G++L A++L+A +A YL       APT+D EV  KLD  WA+IK+RA +A + +  R E +  G +   KR R  + T    RK      F++FGR      TD + D+++E   + + +  E+  YK +FI   +L   EVL +W   GK  F  L  VAQQ FGNQA+ + VERDFSG G+ L PNRSR++ YWVE+VMFL AN+  IP    IP + ++++R CLPA+F+G + DL+ AE   D L N  PP+  DI +
Sbjct:   29 RVWDDDSADPSPFRDAAVLLTPPFNTGKYLEALRLSAADAEYLSIGKKGLAPTMDSEVTAKLDGCWADIKRRAWEAARERNRRSESLDDGVQPLHKRFRGESSTSSATRKSR----FSLFGRGDARSSTDDMADEDSEDRKLGEVVAGELEHYKSLFIKADELDCREVLPWWKRTGKNIFPHLAPVAQQVFGNQAAVSQVERDFSGVGILLAPNRSRMDTYWVEIVMFLNANFAHIPPLKQIPMVAAKNIRSCLPARFHGRDADLMAAEAIFDVLMNTAPPSVNDIDL 312          
BLAST of mRNA_L-elsbetiae_contig15994.4130.1 vs. uniprot
Match: A0A6H5JWR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWR2_9PHAE)

HSP 1 Score: 219 bits (559), Expect = 1.430e-64
Identity = 130/249 (52.21%), Postives = 151/249 (60.64%), Query Frame = 3
Query:  105 LTAEEAAYLPANTGATAPTLDEEVNEKLDEAWAEIKKRAVQAVKTQQDRP--EVGGGSEGPFKRARTHTGRPARKQAEEDPFAVFGRTDVV--DDDETE*DVVEQEIGSEIMRYKGVFIAPKDLPPSEVLMYWGTKGKFAFASLKYVAQQTFGNQASAAPVERDFSGCGLFLVPNRSRVEEYWVEMVMFLKANYQFIPEYGDIPNIDSRDMRKCLPAKFNGTNEDLLKAEMALDPLSNDTPPNKADIGV 839
            LTAEE  YLPA +    PT DE+V EKLDE WAEIKKRAV AVK  Q R   + G G  GPFKRART    P+R++  +D FAVFGR +V     +E + D+VE+ + SEIMRYKGVF+   DLPPS+VL YW T GK +F SLKYVAQQT G+QASA  VER FS CGLF V NR                                         KF+G N+DLLKAEMALDPLSN TPP + D+GV
Sbjct:  295 LTAEEGEYLPAGSDVIVPTSDEDVQEKLDETWAEIKKRAVTAVKKAQSRAVGDGGNGEAGPFKRARTSGAGPSRRKNHDDAFAVFGRNEVAPQSSNEEDLDLVEKGVSSEIMRYKGVFMRSTDLPPSKVLHYWKTVGKHSFPSLKYVAQQTLGSQASAPQVERGFSHCGLFCVGNR-----------------------------------------KFSGKNDDLLKAEMALDPLSNTTPPQEDDVGV 502          
BLAST of mRNA_L-elsbetiae_contig15994.4130.1 vs. uniprot
Match: A0A6H5K0P1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0P1_9PHAE)

HSP 1 Score: 216 bits (549), Expect = 7.830e-62
Identity = 122/218 (55.96%), Postives = 146/218 (66.97%), Query Frame = 3
Query:    3 RVWDDTTPDPSFFCDAARLLTPPFSEGRHLAAMKLTAEEAAYLPANTGATAPTLDEEVNEKLDEAWAEIKKRAVQAVKTQQDRPEVGGGSEG--PFKRARTHTGRPARKQAEEDPFAVFGRTDVV--DDDETE*DVVEQEIGSEIMRYKGVFIAPKDLPPSEVLMYWGTKGKFAFASLKYVAQQTFGNQASAAPVERDFSGCGLFLVPNRSRVEEYWV 644
            RVWDD+  DPS FCDAA LLTPPFSEG + +AMKLTAEE  YL A +   APT DE+V EKL+  WAEIKKRA+ AVKT Q+R    GG +G  PFKRART    P+R++  E+ F++FGR +V     DE + D VE+E+  EIMR              +VL YW   G+    SLKYVAQQTFG+QASAA +ERDFS CGLF   NRSR EEYW+
Sbjct:  450 RVWDDSCLDPSMFCDAACLLTPPFSEGNYPSAMKLTAEEDEYLAAGSTVVAPTSDEDVREKLEGIWAEIKKRAITAVKTAQNRAAGEGGGQGSDPFKRARTSGAAPSRRKNYENDFSMFGRNEVAPSQSDEGDVDFVEEEVSGEIMR--------------DVLTYWNKVGEQMLPSLKYVAQQTFGSQASAAQIERDFSHCGLFSTGNRSRAEEYWL 653          
BLAST of mRNA_L-elsbetiae_contig15994.4130.1 vs. uniprot
Match: A0A6H5KZ46_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ46_9PHAE)

HSP 1 Score: 206 bits (523), Expect = 2.680e-58
Identity = 115/279 (41.22%), Postives = 163/279 (58.42%), Query Frame = 3
Query:    3 RVWDDTTPDPSFFCDAARLLTPPFSEGRHLAAMKLTAEEAAYLPANTGATAPTLDEEVNEKLDEAWAEIKKRAVQAVKTQQDRPEVGGGSEGPFKRARTHTGRPARKQAEEDPFAVFGRTDVVDDDETE*DVVEQEIGSEIMRYKGVFIAPKDLPPSEVLMYWGTKGKFAFASLKYVAQQTFGNQASAAPVERDFSGCGLFLVPNRSRVEEYWVEMVMFLKANYQFIPEYGDIPNIDSRDMRKCLPAKFNGTNEDLLKAEMALDPLSNDTPPNKADIGV 839
            RVWD  + DPS F +A+ LLTP + +   L A  LTA ++ +L       APT+D EV++KL++ WA+IK RA +A + +        G + P KR  T   +   + A      V G T+ V + ++E  V+ Q++  E+ R++ +++  ++L   EVL +W   G+  F  L  VAQQ  GNQA AA VERDFS C   L  NRSR++ YWVEMVMFL  NY+ IP + DIP I ++D+R CLP +FNG + DL  AE   D + N    N +DIGV
Sbjct:  345 RVWDQDSADPSPFRNASVLLTPSYKDTNFLQAHALTAADSQHLDQRKAHLAPTIDTEVDQKLNDCWADIKARASEAARKKHSARATAEGGQPPLKRLSTPATKARPRFASLARNRVRGDTEDVGEGDSEDKVLMQQVSQELERFQALYMTAEELDTREVLPWWRNTGRKMFPCLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIRTCLPPRFNGGDADLAAAEATFDVIEN---TNNSDIGV 620          
BLAST of mRNA_L-elsbetiae_contig15994.4130.1 vs. uniprot
Match: A0A6H5JWE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWE7_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 1.950e-50
Identity = 102/168 (60.71%), Postives = 113/168 (67.26%), Query Frame = 3
Query:    3 RVWDDTTPDPSFFCDAARLLTPPFSEGRHLAAMKLTAEEAAYLPANTGATAPTLDEEVNEKLDEAWAEIKKRAVQAVKTQQDRPEVGGGSEG--PFKRARTHTGRPARKQAEEDPFAVFGRTDVV-DDDETE*DVVEQEIGSEIMRYKGVFIAPKDLPPSEVLMYWGT 497
            RVWD +T DPS  CDA  LLTPPFSEG +++AMKLTAEE  YLPA +  TAPTLDEEV EKLD AW EIKKRAV AVKT Q R           P KRART    P R++  ED FAVFGR +V     E   D+VE+E+ SEIMRYKGVFI   DL PSE L YW T
Sbjct:  200 RVWDTSTLDPSVLCDAPCLLTPPFSEGNYVSAMKLTAEECEYLPAGSCVTAPTLDEEVKEKLDGAWTEIKKRAVAAVKTAQSRAAXXXXXXXXXPLKRARTSAAGPTRRKNREDAFAVFGRKEVAPQSSEGNLDLVEEEVSSEIMRYKGVFIESTDLSPSEALNYWKT 367          
BLAST of mRNA_L-elsbetiae_contig15994.4130.1 vs. uniprot
Match: A0A6H5KBZ2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ2_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 3.980e-47
Identity = 92/161 (57.14%), Postives = 117/161 (72.67%), Query Frame = 3
Query:    3 RVWDDTTPDPSFFCDAARLLTPPFSEGRHLAAMKLTAEEAAYLPANTGATAPTLDEEVNEKLDEAWAEIKKRAVQAVKTQQDRP--EVGGGSEGPFKRARTHTGRPARKQAE--EDPFAVFGRTDVV---DDDETE*DVVEQEIGSEIMRYKGVFIAPKDL 464
            RVWD++T DPS F D A LLTPPFSEG +L+AMKLT EE  YLPA +   APT DE+V EKLD AWAEI+KRAV AVK  Q +   +  GG  GPFKRART+   P+R++ E  +D FA FGR +V    ++++ + D+VE+E+ SEIMRYKGVF+ PKD+
Sbjct:   29 RVWDESTLDPSIFADVACLLTPPFSEGNYLSAMKLTVEEGDYLPAGSSVIAPTSDEDVREKLDGAWAEIQKRAVTAVKKAQRQAAGDSDGGGAGPFKRARTNGAGPSRRKNENQDDTFAAFGRNEVAPQTNEEDADVDLVEEEVVSEIMRYKGVFMRPKDV 189          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15994.4130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJJ9_9PHAE1.100e-11464.52Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5K8W6_9PHAE2.650e-9859.93Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JB08_9PHAE2.050e-9462.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFQ8_9PHAE7.840e-8353.17Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZQ5_9PHAE5.370e-6844.44Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JWR2_9PHAE1.430e-6452.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0P1_9PHAE7.830e-6255.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZ46_9PHAE2.680e-5841.22Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JWE7_9PHAE1.950e-5060.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBZ2_9PHAE3.980e-4757.14Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15994contigL-elsbetiae_contig15994:2877..3949 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size867
Cds size423
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15994.4130.1prot_L-elsbetiae_contig15994.4130.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15994 3302..3930 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815658.579365-UTR-L-elsbetiae_contig15994:2876..33011622815658.579365-UTR-L-elsbetiae_contig15994:2876..3301Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15994 2877..3301 +
1691683019.7857082-UTR-L-elsbetiae_contig15994:2876..33011691683019.7857082-UTR-L-elsbetiae_contig15994:2876..3301Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15994 2877..3301 +
1622815658.6168604-UTR-L-elsbetiae_contig15994:3930..39491622815658.6168604-UTR-L-elsbetiae_contig15994:3930..3949Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15994 3931..3949 +
1691683019.8173673-UTR-L-elsbetiae_contig15994:3930..39491691683019.8173673-UTR-L-elsbetiae_contig15994:3930..3949Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15994 3931..3949 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815658.5940409-CDS-L-elsbetiae_contig15994:3301..33371622815658.5940409-CDS-L-elsbetiae_contig15994:3301..3337Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15994 3302..3337 +
1691683019.7985198-CDS-L-elsbetiae_contig15994:3301..33371691683019.7985198-CDS-L-elsbetiae_contig15994:3301..3337Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15994 3302..3337 +
1622815658.6051755-CDS-L-elsbetiae_contig15994:3543..39301622815658.6051755-CDS-L-elsbetiae_contig15994:3543..3930Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15994 3544..3930 +
1691683019.8069437-CDS-L-elsbetiae_contig15994:3543..39301691683019.8069437-CDS-L-elsbetiae_contig15994:3543..3930Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15994 3544..3930 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15994.4130.1

>prot_L-elsbetiae_contig15994.4130.1 ID=prot_L-elsbetiae_contig15994.4130.1|Name=mRNA_L-elsbetiae_contig15994.4130.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=141bp
MRYKGVFIAPKDLPPSEVLMYWGTKGKFAFASLKYVAQQTFGNQASAAPV
ERDFSGCGLFLVPNRSRVEEYWVEMVMFLKANYQFIPEYGDIPNIDSRDM
RKCLPAKFNGTNEDLLKAEMALDPLSNDTPPNKADIGVDG*
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mRNA from alignment at L-elsbetiae_contig15994:2877..3949+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15994.4130.1 ID=mRNA_L-elsbetiae_contig15994.4130.1|Name=mRNA_L-elsbetiae_contig15994.4130.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1073bp|location=Sequence derived from alignment at L-elsbetiae_contig15994:2877..3949+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGTGTGTGGGACGACACCACCCCTGACCCCTCCTTCTTCTGCGACGCT GCTCGCCTGCTAACGCCGCCTTTTAGTGAAGGACGCCATCTTGCGGCGAT GAAGCTTACAGCAGAGGAGGCGGCGTACTTGCCTGCCAACACGGGGGCAA CAGCCCCCACGCTGGATGAAGAAGTGAATGAAAAGCTGGACGAGGCTTGG GCTGAAATCAAGAAGAGGGCAGTGCAGGCCGTCAAGACACAACAGGATCG GCCCGAGGTGGGGGGCGGTAGTGAGGGCCCTTTTAAACGTGCCCGCACTC ACACGGGGCGGCCTGCTCGCAAGCAGGCGGAAGAGGACCCGTTCGCAGTT TTCGGACGCACCGATGTCGTCGACGACGACGAGACCGAATAAGACGTGGT TGAGCAGGAAATCGGGAGCGAGATCATGCGGTACAAGGGGGTGTTCATTG CACCCAAAGATGTGAGTGTAGCTGGGTTGTTTTGGTTGTACCTTTCAGGC CTTGCGGCTTCGTCGCCTTGTGCGTTTGTCTCGCAGTTTGTCCACGGTAC TCTCTTCAGTCGCAGTCTCGTGCCGGAACAGTGAATGAACCCTGACCCTT AGTTTTCAACACAAGCAACGCCTTCCATTCCGCGGCCCGTCTATGTCTTT GCCCTTCACTCTTACAGTTGCCGCCCAGCGAAGTCCTGATGTACTGGGGG ACTAAAGGGAAATTCGCCTTCGCCTCGCTGAAGTATGTGGCGCAGCAAAC ATTCGGGAATCAAGCCTCTGCTGCTCCGGTGGAGCGAGACTTCAGCGGAT GCGGGCTTTTCTTGGTGCCGAACCGCAGCCGCGTAGAGGAGTACTGGGTG GAAATGGTGATGTTTCTGAAGGCAAACTACCAATTCATCCCGGAGTACGG CGACATCCCTAACATCGACTCGAGGGACATGAGGAAGTGTCTCCCTGCGA AGTTCAACGGAACAAACGAGGACCTCCTGAAGGCAGAGATGGCGCTTGAT CCGCTGTCGAACGACACACCTCCCAACAAGGCTGACATTGGCGTAGACGG GTAGTTCAACTGTAAAGTAAAAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15994:2877..3949+

>mRNA_L-elsbetiae_contig15994.4130.1 ID=mRNA_L-elsbetiae_contig15994.4130.1|Name=mRNA_L-elsbetiae_contig15994.4130.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=846bp|location=Sequence derived from alignment at L-elsbetiae_contig15994:2877..3949+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGTACAAGGGGGTGTTCATTGCACCCAAAGATATGCGGTACAAGGG
GGTGTTCATTGCACCCAAAGATTTGCCGCCCAGCGAAGTCCTGATGTACT
GGGGGACTAAAGGGAAATTCGCCTTCGCCTCGCTGAAGTATGTGGCGCAG
CAAACATTCGGGAATCAAGCCTCTGCTGCTCCGGTGGAGCGAGACTTCAG
CGGATGCGGGCTTTTCTTGGTGCCGAACCGCAGCCGCGTAGAGGAGTACT
GGGTGGAAATGGTGATGTTTCTGAAGGCAAACTACCAATTCATCCCGGAG
TACGGCGACATCCCTAACATCGACTCGAGGGACATGAGGAAGTGTCTCCC
TGCGAAGTTCAACGGAACAAACGAGGACCTCCTGAAGGCAGAGATGGCGC
TTGATCCGCTGTCGAACGACACACCTCCCAACAAGGCTGACATTGGCGTA
GACGGGTAGTTGCCGCCCAGCGAAGTCCTGATGTACTGGGGGACTAAAGG
GAAATTCGCCTTCGCCTCGCTGAAGTATGTGGCGCAGCAAACATTCGGGA
ATCAAGCCTCTGCTGCTCCGGTGGAGCGAGACTTCAGCGGATGCGGGCTT
TTCTTGGTGCCGAACCGCAGCCGCGTAGAGGAGTACTGGGTGGAAATGGT
GATGTTTCTGAAGGCAAACTACCAATTCATCCCGGAGTACGGCGACATCC
CTAACATCGACTCGAGGGACATGAGGAAGTGTCTCCCTGCGAAGTTCAAC
GGAACAAACGAGGACCTCCTGAAGGCAGAGATGGCGCTTGATCCGCTGTC
GAACGACACACCTCCCAACAAGGCTGACATTGGCGTAGACGGGTAG
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