mRNA_L-elsbetiae_contig15994.4129.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15994.4129.1
Unique NamemRNA_L-elsbetiae_contig15994.4129.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig15994.4129.1 vs. uniprot
Match: A0A6H5KFQ8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFQ8_9PHAE)

HSP 1 Score: 224 bits (570), Expect = 1.150e-68
Identity = 106/133 (79.70%), Postives = 120/133 (90.23%), Query Frame = 1
Query:    1 VIKVVENLNKSSNLRAKFDDLQVELLGDVFKVVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGKNFPLEEGDNKNGILQLYSLLQPLSSITRDGQYGGAPMTADIYMKFGVLKMGVLDPSKDLKVFDIPPI 399
            VIKVVENLNKSSNLRAKF+DL+ ELLG+V KVVKHAPQRWLS+ RT+ERIIRLWH LRKLYSDEGK FPLEEGDNKNG+LQLYSLL+PL  ITRDGQYGGAPM ADIYMK G+LKMG+L+  K+LKV++ P +
Sbjct:   50 VIKVVENLNKSSNLRAKFEDLETELLGEVLKVVKHAPQRWLSMVRTMERIIRLWHALRKLYSDEGKVFPLEEGDNKNGVLQLYSLLEPLCMITRDGQYGGAPMMADIYMKMGILKMGMLNLEKELKVYETPRV 182          
BLAST of mRNA_L-elsbetiae_contig15994.4129.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE)

HSP 1 Score: 229 bits (585), Expect = 2.570e-68
Identity = 108/133 (81.20%), Postives = 122/133 (91.73%), Query Frame = 1
Query:    1 VIKVVENLNKSSNLRAKFDDLQVELLGDVFKVVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGKNFPLEEGDNKNGILQLYSLLQPLSSITRDGQYGGAPMTADIYMKFGVLKMGVLDPSKDLKVFDIPPI 399
            V+KVVENLNKS N +AKF+DLQV++LG++FK+VKHAPQRWLSLTRT+ER IRLWHVLRKLYSDEG+NFPLEEGD K+ ILQLYSLLQPLSSITRDGQYG APM ADI+MKFG+L   VLDPSKDLKVF +PPI
Sbjct:  395 VVKVVENLNKSPNFKAKFEDLQVDMLGEIFKMVKHAPQRWLSLTRTVERTIRLWHVLRKLYSDEGRNFPLEEGDTKDAILQLYSLLQPLSSITRDGQYGDAPMMADIFMKFGMLNTDVLDPSKDLKVFQVPPI 527          
BLAST of mRNA_L-elsbetiae_contig15994.4129.1 vs. uniprot
Match: A0A6H5KEE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEE6_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 4.430e-65
Identity = 102/133 (76.69%), Postives = 115/133 (86.47%), Query Frame = 1
Query:    1 VIKVVENLNKSSNLRAKFDDLQVELLGDVFKVVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGKNFPLEEGDNKNGILQLYSLLQPLSSITRDGQYGGAPMTADIYMKFGVLKMGVLDPSKDLKVFDIPPI 399
            VI +V  LN+SSN +AKF+DLQV+LLGDV K+   APQRWL+  RTLER+IRLWHVLRKLYSD GKNFPLEEGDNKN ILQL+SLLQ LSS+TRDGQYG APM AD++MKFG LKM VLDPSK LKVFDIPP+
Sbjct:  111 VISMVGTLNRSSNFKAKFEDLQVDLLGDVLKIPNQAPQRWLTQVRTLERVIRLWHVLRKLYSDAGKNFPLEEGDNKNAILQLFSLLQSLSSVTRDGQYGNAPMQADVFMKFGELKMEVLDPSKPLKVFDIPPL 243          
BLAST of mRNA_L-elsbetiae_contig15994.4129.1 vs. uniprot
Match: A0A6H5L8D8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D8_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 8.700e-65
Identity = 99/133 (74.44%), Postives = 117/133 (87.97%), Query Frame = 1
Query:    1 VIKVVENLNKSSNLRAKFDDLQVELLGDVFKVVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGKNFPLEEGDNKNGILQLYSLLQPLSSITRDGQYGGAPMTADIYMKFGVLKMGVLDPSKDLKVFDIPPI 399
            +I +V  L++SSN +AKFDDLQV++LG+V K+   AP+RWL+L RTLER+IRLWHVLRKLYSD GK FPLEEGDNK+ ILQLYSLLQP SS+TRDGQYGGAPM ADIYMK G+LKM VLDPS++LKVFDIPP+
Sbjct:  162 LINLVGTLHRSSNFKAKFDDLQVDVLGEVLKIPNQAPKRWLTLVRTLERVIRLWHVLRKLYSDTGKTFPLEEGDNKDCILQLYSLLQPPSSVTRDGQYGGAPMLADIYMKCGMLKMRVLDPSEELKVFDIPPL 294          
BLAST of mRNA_L-elsbetiae_contig15994.4129.1 vs. uniprot
Match: A0A6H5JGB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGB7_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 1.030e-60
Identity = 93/124 (75.00%), Postives = 109/124 (87.90%), Query Frame = 1
Query:   28 KSSNLRAKFDDLQVELLGDVFKVVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGKNFPLEEGDNKNGILQLYSLLQPLSSITRDGQYGGAPMTADIYMKFGVLKMGVLDPSKDLKVFDIPPI 399
            KSSN +AKFDDLQV++LG+V K+   APQRWL+L RTLER++RLW VLRKLYSD GK FPLEEGD+K+ ILQLYSLLQP  S+TRDGQYGGAPM ADIYMKFG+LKM VL PS++LKVFD+PP+
Sbjct:   67 KSSNFKAKFDDLQVDVLGEVLKIPDQAPQRWLTLVRTLERVVRLWRVLRKLYSDTGKTFPLEEGDDKDCILQLYSLLQPFPSVTRDGQYGGAPMLADIYMKFGMLKMRVLHPSEELKVFDVPPL 190          
BLAST of mRNA_L-elsbetiae_contig15994.4129.1 vs. uniprot
Match: A0A6H5JZ66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ66_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 3.920e-60
Identity = 97/133 (72.93%), Postives = 114/133 (85.71%), Query Frame = 1
Query:    1 VIKVVENLNKSSNLRAKFDDLQVELLGDVFKVVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGKNFPLEEGDNKNGILQLYSLLQPLSSITRDGQYGGAPMTADIYMKFGVLKMGVLDPSKDLKVFDIPPI 399
            +I ++  L+KS NL AKF+DLQV+LLG+V  +   APQRWL+L RT+ER+IRLW V+RKLYSD GKNFPLEEGDNK+ I QLYSLLQPLSS+TRDGQYGG PM ADIYMKFG+LKMGVL+ S DLKVFDIPP+
Sbjct:  143 LIGIIGTLHKS-NLTAKFEDLQVDLLGEVLNIPNQAPQRWLTLVRTMERVIRLWRVMRKLYSDAGKNFPLEEGDNKDCINQLYSLLQPLSSVTRDGQYGGLPMLADIYMKFGMLKMGVLNSSADLKVFDIPPL 274          
BLAST of mRNA_L-elsbetiae_contig15994.4129.1 vs. uniprot
Match: A0A6H5JB08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB08_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 1.620e-59
Identity = 98/133 (73.68%), Postives = 114/133 (85.71%), Query Frame = 1
Query:    1 VIKVVENLNKSSNLRAKFDDLQVELLGDVFKVVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGKNFPLEEGDNKNGILQLYSLLQPLSSITRDGQYGGAPMTADIYMKFGVLKMGVLDPSKDLKVFDIPPI 399
            +I +V  L+KS NL AKF+DLQV+LLG+V K+   APQRWL+L RT+ER+IRLWHVLRKLYSD GKNF LEEGDNK+ I QLYSLLQ LSS+TRDGQYGG PM ADIY+KFG+LKMGVL+ S DLKVFDIPP+
Sbjct:  151 LIGIVGTLHKSLNLTAKFEDLQVDLLGEVLKIPNQAPQRWLTLVRTMERVIRLWHVLRKLYSDAGKNFILEEGDNKDCIPQLYSLLQSLSSVTRDGQYGGLPMLADIYIKFGMLKMGVLNSSADLKVFDIPPL 283          
BLAST of mRNA_L-elsbetiae_contig15994.4129.1 vs. uniprot
Match: A0A6H5K0P1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0P1_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 1.210e-58
Identity = 97/133 (72.93%), Postives = 114/133 (85.71%), Query Frame = 1
Query:    1 VIKVVENLNKSSNLRAKFDDLQVELLGDVFKVVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGKNFPLEEGDNKNGILQLYSLLQPLSSITRDGQYGGAPMTADIYMKFGVLKMGVLDPSKDLKVFDIPPI 399
            +I ++  L+KS NL AKF+DLQV+LLG+V  +   APQRWL+L RT+ER+IRLW V+RKLYSD GKNFPLEEGDNK+ I QLYSLLQPLSS+TRDGQYGG PM ADIYMKFG+LKMGVL+ S DLKVFDIPP+
Sbjct:  272 LIGIIGTLHKS-NLTAKFEDLQVDLLGEVLNIPNQAPQRWLTLVRTMERVIRLWRVMRKLYSDAGKNFPLEEGDNKDCINQLYSLLQPLSSVTRDGQYGGLPMLADIYMKFGMLKMGVLNSSADLKVFDIPPL 403          
BLAST of mRNA_L-elsbetiae_contig15994.4129.1 vs. uniprot
Match: A0A6H5KS21_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS21_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 3.880e-53
Identity = 86/115 (74.78%), Postives = 100/115 (86.96%), Query Frame = 1
Query:    1 VIKVVENLNKSSNLRAKFDDLQVELLGDVFKVVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGKNFPLEEGDNKNGILQLYSLLQPLSSITRDGQYGGAPMTADIYMKFGVLK 345
            VI +V  L+KS NL AKF+D+QV+LLG++ K+   APQRWL+L RTLER+IRLWHVLRKL+SD GK FPLEEGDNK+ ILQLYSLLQPLSS+TRDGQYGG PM ADIYMKFG+LK
Sbjct:  308 VIGMVGTLHKSPNLTAKFEDVQVDLLGEILKIPNQAPQRWLTLVRTLERVIRLWHVLRKLHSDAGKTFPLEEGDNKDCILQLYSLLQPLSSVTRDGQYGGVPMMADIYMKFGMLK 422          
BLAST of mRNA_L-elsbetiae_contig15994.4129.1 vs. uniprot
Match: A0A6H5JTT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT2_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 5.370e-49
Identity = 88/133 (66.17%), Postives = 103/133 (77.44%), Query Frame = 1
Query:    1 VIKVVENLNKSSNLRAKFDDLQVELLGDVFKVVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGKNFPLEEGDNKNGILQLYSLLQPLSSITRDGQYGGAPMTADIYMKFGVLKMGVLDPSKDLKVFDIPPI 399
            +I +V  L++SSN +AKF DLQV++ G+VF     APQRWL+L  TLER+IRLWHVLRKLYSD GK FPLEEGD  + ILQL SLLQPLSS+TRDGQYGGAPM          LKM VLDPS++LKVFDIPP+
Sbjct:  119 LINLVGTLHRSSNFKAKFGDLQVDVWGEVFP--NQAPQRWLTLVPTLERVIRLWHVLRKLYSDTGKTFPLEEGDITDCILQLNSLLQPLSSVTRDGQYGGAPM----------LKMRVLDPSEELKVFDIPPL 239          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15994.4129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5KFQ8_9PHAE1.150e-6879.70Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JJJ9_9PHAE2.570e-6881.20Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KEE6_9PHAE4.430e-6576.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L8D8_9PHAE8.700e-6574.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGB7_9PHAE1.030e-6075.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZ66_9PHAE3.920e-6072.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JB08_9PHAE1.620e-5973.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0P1_9PHAE1.210e-5872.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KS21_9PHAE3.880e-5374.78Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JTT2_9PHAE5.370e-4966.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15994contigL-elsbetiae_contig15994:2342..2740 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size400
Cds size399
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815658.5470865-CDS-L-elsbetiae_contig15994:2341..27401622815658.5470865-CDS-L-elsbetiae_contig15994:2341..2740Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15994 2342..2740 +
1691683019.7753808-CDS-L-elsbetiae_contig15994:2341..27401691683019.7753808-CDS-L-elsbetiae_contig15994:2341..2740Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15994 2342..2740 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15994.4129.1prot_L-elsbetiae_contig15994.4129.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15994 2342..2740 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15994.4129.1

>prot_L-elsbetiae_contig15994.4129.1 ID=prot_L-elsbetiae_contig15994.4129.1|Name=mRNA_L-elsbetiae_contig15994.4129.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=133bp
VIKVVENLNKSSNLRAKFDDLQVELLGDVFKVVKHAPQRWLSLTRTLERI
IRLWHVLRKLYSDEGKNFPLEEGDNKNGILQLYSLLQPLSSITRDGQYGG
APMTADIYMKFGVLKMGVLDPSKDLKVFDIPPI
back to top

mRNA from alignment at L-elsbetiae_contig15994:2342..2740+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15994.4129.1 ID=mRNA_L-elsbetiae_contig15994.4129.1|Name=mRNA_L-elsbetiae_contig15994.4129.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=399bp|location=Sequence derived from alignment at L-elsbetiae_contig15994:2342..2740+ (Laminarionema elsbetiae ELsaHSoW15)
GTCATCAAGGTCGTCGAGAACCTCAACAAGTCTTCCAACCTGAGGGCGAA GTTCGACGACCTCCAGGTGGAGCTGTTGGGCGACGTCTTCAAGGTCGTGA AGCACGCGCCCCAACGGTGGCTCAGCCTCACTCGCACACTGGAGCGGATA ATCCGCTTGTGGCATGTCCTGAGGAAGCTCTACAGCGACGAGGGGAAGAA CTTCCCGCTCGAAGAGGGTGACAACAAGAACGGCATCCTTCAGCTATACT CGCTGCTGCAGCCGCTTTCCTCTATCACACGTGATGGCCAGTACGGCGGT GCGCCGATGACGGCAGACATCTACATGAAGTTCGGCGTGCTAAAGATGGG AGTGCTGGACCCATCGAAGGATCTCAAGGTCTTCGACATCCCGCCCATT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig15994:2342..2740+

>mRNA_L-elsbetiae_contig15994.4129.1 ID=mRNA_L-elsbetiae_contig15994.4129.1|Name=mRNA_L-elsbetiae_contig15994.4129.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=798bp|location=Sequence derived from alignment at L-elsbetiae_contig15994:2342..2740+ (Laminarionema elsbetiae ELsaHSoW15)
GTCATCAAGGTCGTCGAGAACCTCAACAAGTCTTCCAACCTGAGGGCGAA
GTTCGACGACCTCCAGGTGGAGCTGTTGGGCGACGTCTTCAAGGTCGTGA
AGCACGCGCCCCAACGGTGGCTCAGCCTCACTCGCACACTGGAGCGGATA
ATCCGCTTGTGGCATGTCCTGAGGAAGCTCTACAGCGACGAGGGGAAGAA
CTTCCCGCTCGAAGAGGGTGACAACAAGAACGGCATCCTTCAGCTATACT
CGCTGCTGCAGCCGCTTTCCTCTATCACACGTGATGGCCAGTACGGCGGT
GCGCCGATGACGGCAGACATCTACATGAAGTTCGGCGTGCTAAAGATGGG
AGTGCTGGACCCATCGAAGGATCTCAAGGTCTTCGACATCCCGCCCATTG
TCATCAAGGTCGTCGAGAACCTCAACAAGTCTTCCAACCTGAGGGCGAAG
TTCGACGACCTCCAGGTGGAGCTGTTGGGCGACGTCTTCAAGGTCGTGAA
GCACGCGCCCCAACGGTGGCTCAGCCTCACTCGCACACTGGAGCGGATAA
TCCGCTTGTGGCATGTCCTGAGGAAGCTCTACAGCGACGAGGGGAAGAAC
TTCCCGCTCGAAGAGGGTGACAACAAGAACGGCATCCTTCAGCTATACTC
GCTGCTGCAGCCGCTTTCCTCTATCACACGTGATGGCCAGTACGGCGGTG
CGCCGATGACGGCAGACATCTACATGAAGTTCGGCGTGCTAAAGATGGGA
GTGCTGGACCCATCGAAGGATCTCAAGGTCTTCGACATCCCGCCCATT
back to top