prot_L-elsbetiae_contig15993.4128.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig15993.4128.1
Unique Nameprot_L-elsbetiae_contig15993.4128.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length134
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig15993.4128.1 vs. uniprot
Match: D8LD24_ECTSI (THO complex subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD24_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 1.750e-44
Identity = 85/108 (78.70%), Postives = 95/108 (87.96%), Query Frame = 0 
Query:   24 MVDEVDKLSRIYSVLTDGEVEAWVSSEEEPKLPSEAVTAAFREAEGLFAEEQDGGAGGDSLEINYRDIAIPRLSEVLSELVWRIVGGTVSVDLAIDYLASDKPFQNRL 131
            M +EV KL  IYSVLT+ EVEAWVSS + PKLPSE++T AFR+AE LFAEEQDGG GGDSLEINYRDIAIPRLSE+LSELVWR+VGG +SVDLAI YLASDKPF +RL
Sbjct:    1 MAEEVAKLGGIYSVLTEEEVEAWVSSGD-PKLPSESITGAFRQAERLFAEEQDGGEGGDSLEINYRDIAIPRLSEILSELVWRVVGGELSVDLAISYLASDKPFASRL 107
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15993.4128.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LD24_ECTSI1.750e-4478.70THO complex subunit 2 n=2 Tax=Ectocarpus TaxID=287... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15993contigL-elsbetiae_contig15993:913..2642 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15993.4128.1mRNA_L-elsbetiae_contig15993.4128.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig15993 913..2642 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig15993.4128.1 ID=prot_L-elsbetiae_contig15993.4128.1|Name=mRNA_L-elsbetiae_contig15993.4128.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=134bp
RGTHYSRVQRGSIDRLGASNSSTMVDEVDKLSRIYSVLTDGEVEAWVSSE
EEPKLPSEAVTAAFREAEGLFAEEQDGGAGGDSLEINYRDIAIPRLSEVL
SELVWRIVGGTVSVDLAIDYLASDKPFQNRLGPR
back to top