prot_L-elsbetiae_contig1598.4120.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1598.4120.1
Unique Nameprot_L-elsbetiae_contig1598.4120.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length676
Homology
BLAST of mRNA_L-elsbetiae_contig1598.4120.1 vs. uniprot
Match: D7FRN3_ECTSI (Ubiquitin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRN3_ECTSI)

HSP 1 Score: 364 bits (934), Expect = 1.400e-113
Identity = 277/642 (43.15%), Postives = 346/642 (53.89%), Query Frame = 0
Query:   91 VVQLPNTATFGELLELAREKRYGAVEFEGPVYGCRGELDTTLRDGWVRNGCKIDGTLHIGLAVVVSFPAGSQKPVSLIMGPGDTVNEVKQRVDADHGLNPSQQKLMISGRAQQLEDSVALSELLVSGVPVGGVSSAGWSELHLELRVRGCALRSDNNFRATLRHESGGWPASED--------PVVGASSLSSGASWRLLRPCHP-APQFSPRSLDPHASQETKAGYLCGGGGSVGGLLSARSSGAACSIVVFALSPSGRALTLSMREGATVLDAKGYVASLEGFSPCRQRLLWRGINMEPDSASLHELGVRNGDTLVVGYKL---AIPEVLTSMAESEATA-GDDTLVAEVMEKQKDHPPGDVHLVLGSDR--------HSDDGVLAESATAVAETAEAAAGGDESNADNARGDTTA----------------VAIPPGARA---RN---DEIDDTEXXXXXXXXXXD-NALILPSG--SASGQGNGKAGRRRAWWS-REKSRSMSRYGDPGEHGHDGSGNERSVEVVVPTSASSSATISSDSISG-VNTRRVRVAPSPELPANLNAPTG------GIVRRVEAASTGAVYVSATAGAAV--RQPLTPSAGRTNLSGWAR--LGRRIPAFPIFSSEGGSGGG 674
            +V+LPNTATFGELL  AREKR+GA+E EGPVYG  GELDTTLRDGWVRN CK+DGTLHIGLAVVVSFP GSQ+ +SL MGPG T+ +VKQR+  DHG+ PS+Q LMI G AQ+L  +V L E  V GVPVGG S  GW EL LEL V  C  R  N+ +  +R  S GW ASE         P  G   L S +    L P  P A  + P++ +  +S  T +     G  +V    +        S V+FALSPSGRALTL+M   ATVLDAK  VA+ EG SPCRQRLLWRGI MEPD A L  LG R GDTL+VGY++   A PEV+  + E E  A GDD            H P   H   G+ R         + DG + E  T+  E+A A A GDE+N      D  A                V  P GA     RN   D +D  +          D NA    S   S +  G+ K+G +RAWW+ R  +RS+       E G   +G   ++   V  S+ S++T S+DS +   +TRRVRV+P+P +P + NA  G       I+R + A    ++Y S         +Q   PS GR  L  WAR   GRR+P  P+     G GGG
Sbjct:    1 MVRLPNTATFGELLARAREKRHGALELEGPVYGRDGELDTTLRDGWVRNSCKVDGTLHIGLAVVVSFPRGSQRSLSLTMGPGATIGDVKQRICVDHGIVPSRQGLMICGGAQRLGANVTLKECCVWGVPVGGFSPKGWGELRLELHVAECTTR--NSLQVAMRDSSQGWSASEFRGAVGVGLPSRGTDVLRSPSQPSHLTPSPPVAATYVPQNNE-GSSLTTPSSLHRNGASTVETRPTVEHGSGPYSTVMFALSPSGRALTLTMAPTATVLDAKTQVAAFEGVSPCRQRLLWRGILMEPDGALLRRLGARGGDTLIVGYRVGPGAPPEVMRPVVELEGNAAGDDDAQNADAAISPTHSPSH-HRPCGAQRGTVDSSGSSNIDGGIPEQGTSGVESAAAVADGDENN------DVVAPXXXXXXXXXXXSGMDVDEPAGAWVNVVRNGGVDVVDGAQRGSGSGEAEQDGNASGATSSPPSEARSGSEKSGGQRAWWAKRMATRSLKGSRSSNEQGWGATGATAALRXXVGASSLSASTPSADSTNNSADTRRVRVSPTPAVPVHQNATHGVDRAGVRILRGIGAGGASSMYDSPXXXXXXXXQQRFIPSVGRPKLKVWARWKYGRRVPTPPV--PHAGDGGG 630          
BLAST of mRNA_L-elsbetiae_contig1598.4120.1 vs. uniprot
Match: A0A077R7K9_9BASI (Probable Polyubiquitin protein n=1 Tax=Melanopsichium pennsylvanicum 4 TaxID=1398559 RepID=A0A077R7K9_9BASI)

HSP 1 Score: 60.5 bits (145), Expect = 3.400e-6
Identity = 74/307 (24.10%), Postives = 131/307 (42.67%), Query Frame = 0
Query:  163 KPVSLIMGPGDTVNEVKQRVDADHGLNPSQQKLMISGRAQQLEDSVALSELLVSGVPVGGVSSAGWSELHLELRVRG---CALRSDNNFRATLRHESGGWPASEDPVVGASSLSSGASWRLLRPCHPAPQFSP-RSLDPHASQETKAGYLCGGGGSVGGLLSARSSGAACSIVVFALSPSGRALTLSMREGATVLDAKGYVASLEGFSPCRQRLLWRGINMEPDSASLHELGVRNGDTLVV------GYKLAIPEVLTSMAESEATAGD--DTLVAEVMEKQKDHPPGDVHLVLGSDRHSDDGVLAE 457
            K ++L +  GDT++ VK ++    G+ P QQ+L+ +G+  QLED   LS+  +             S LHL LR+RG     +++      TL  ESG    + D V        G      R      Q    R+L  +  Q+    +L         +L  R       + +F  + +G+ +TL +  G T+ + K  +   EG  P +QRL++ G  +E D  +L +  ++   TL +      G ++ +  +       E  +GD  D + A++ +K+   PP    L+    +  D   L++
Sbjct:   11 KTITLEVESGDTIDNVKAKIQDKEGIPPDQQRLIFAGK--QLEDGRTLSDYNIQKE----------STLHLVLRLRGGMQIFVKTLTGKTITLEVESGD---TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL---------VLRLRGG-----MQIFVKTLTGKTITLEVESGDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESGDTIDNVKAKIQDKEG-IPPDQQRLIFAGKQLEDGRTLSD 286          
BLAST of mRNA_L-elsbetiae_contig1598.4120.1 vs. uniprot
Match: O46314_AMOPR (Polyubiquitin n=1 Tax=Amoeba proteus TaxID=5775 RepID=O46314_AMOPR)

HSP 1 Score: 58.9 bits (141), Expect = 1.640e-5
Identity = 67/284 (23.59%), Postives = 119/284 (41.90%), Query Frame = 0
Query:  144 DGTLHI------GLAVVVSFPAGSQKPVSLIMGPGDTVNEVKQRVDADHGLNPSQQKLMISGRAQQLEDSVALSELLVSGVPVGGVSSAGWSELHLELRVRG-------------CALR-----SDNNFRATLRHESGGWPASEDPVVGASSLSSGASWRLLRPCHPAPQFSPRSLDPHASQETKAGYLCGGGGSVGGLLSARSSGAACSIVVFALSPSGRALTLSMREGATVLDAKGYVASLEGFSPCRQRLLWRGINMEPDSASLHELGVRNGDTLVVGYKL 403
            + TLH+      G+ + V    G  K ++L + PGD+++ VKQ++    G+ P QQ+L+ +G+  QLED  +LS+  +             S LHL LR+RG               L      S +N +  ++ + G  P  +  +     L  G S                 L  +  Q+    +L         +L  R       + +F  + +G+ +TL +  G ++ + K  +   EG  P +QRL++ G  +E D  SL +  ++   TL +  +L
Sbjct:   64 ESTLHLVLRLRGGMQIFVKTLTG--KTITLEVEPGDSIDNVKQKIQDKEGIPPDQQRLIFAGK--QLEDGRSLSDYNIQKE----------STLHLVLRLRGGMQIFVKTLTGKTITLEVEPGDSIDNVKQKIQDKEGIPPDGQGLIFAGKQLEDGGS-----------------LSDYNIQKESTLHL---------VLRLRGG-----MQIFIKTLTGKTITLEVEPGDSIDNVKEKIQDKEGIPPDQQRLIFAGKQLE-DGRSLSDYNIQKESTLHLVLRL 301          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1598.4120.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FRN3_ECTSI1.400e-11343.15Ubiquitin-like domain-containing protein n=2 Tax=E... [more]
A0A077R7K9_9BASI3.400e-624.10Probable Polyubiquitin protein n=1 Tax=Melanopsich... [more]
O46314_AMOPR1.640e-523.59Polyubiquitin n=1 Tax=Amoeba proteus TaxID=5775 Re... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000626Ubiquitin domainSMARTSM00213ubq_7coord: 151..236
e-value: 1.3
score: 13.4
coord: 330..402
e-value: 0.83
score: 15.5
IPR000626Ubiquitin domainPFAMPF00240ubiquitincoord: 338..399
e-value: 1.7E-7
score: 30.9
IPR000626Ubiquitin domainPROSITEPS50053UBIQUITIN_2coord: 151..213
score: 11.224
IPR000626Ubiquitin domainPROSITEPS50053UBIQUITIN_2coord: 330..399
score: 12.139
NoneNo IPR availableGENE3D3.10.20.90coord: 321..406
e-value: 3.7E-9
score: 37.8
NoneNo IPR availableGENE3D3.10.20.90coord: 147..218
e-value: 2.6E-8
score: 35.3
NoneNo IPR availablePANTHERPTHR10666:SF306UBIQUITIN-LIKE PROTEIN 1-40S RIBOSOMAL PROTEIN S27Acoord: 330..403
NoneNo IPR availablePANTHERPTHR10666UBIQUITINcoord: 330..403
NoneNo IPR availablePANTHERPTHR10666:SF306UBIQUITIN-LIKE PROTEIN 1-40S RIBOSOMAL PROTEIN S27Acoord: 161..215
NoneNo IPR availablePANTHERPTHR10666UBIQUITINcoord: 161..215
IPR029071Ubiquitin-like domain superfamilySUPERFAMILY54236Ubiquitin-likecoord: 155..213
IPR029071Ubiquitin-like domain superfamilySUPERFAMILY54236Ubiquitin-likecoord: 330..404

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1598contigL-elsbetiae_contig1598:8218..11274 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1598.4120.1mRNA_L-elsbetiae_contig1598.4120.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1598 8212..11274 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1598.4120.1 ID=prot_L-elsbetiae_contig1598.4120.1|Name=mRNA_L-elsbetiae_contig1598.4120.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=676bp
MFDILKDMARVLRVPIEDITLLGESGERRAVTLEHTLDEYHDHEALSSSF
VAGKRHRKQINLKVEHTPMLQQLVTCTIEGGEGRNKLRRAVVQLPNTATF
GELLELAREKRYGAVEFEGPVYGCRGELDTTLRDGWVRNGCKIDGTLHIG
LAVVVSFPAGSQKPVSLIMGPGDTVNEVKQRVDADHGLNPSQQKLMISGR
AQQLEDSVALSELLVSGVPVGGVSSAGWSELHLELRVRGCALRSDNNFRA
TLRHESGGWPASEDPVVGASSLSSGASWRLLRPCHPAPQFSPRSLDPHAS
QETKAGYLCGGGGSVGGLLSARSSGAACSIVVFALSPSGRALTLSMREGA
TVLDAKGYVASLEGFSPCRQRLLWRGINMEPDSASLHELGVRNGDTLVVG
YKLAIPEVLTSMAESEATAGDDTLVAEVMEKQKDHPPGDVHLVLGSDRHS
DDGVLAESATAVAETAEAAAGGDESNADNARGDTTAVAIPPGARARNDEI
DDTEGGGGGGGGAEDNALILPSGSASGQGNGKAGRRRAWWSREKSRSMSR
YGDPGEHGHDGSGNERSVEVVVPTSASSSATISSDSISGVNTRRVRVAPS
PELPANLNAPTGGIVRRVEAASTGAVYVSATAGAAVRQPLTPSAGRTNLS
GWARLGRRIPAFPIFSSEGGSGGGG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000626Ubiquitin_dom
IPR029071Ubiquitin-like_domsf