mRNA_L-elsbetiae_contig10406.412.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10406.412.1
Unique NamemRNA_L-elsbetiae_contig10406.412.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10406.412.1 vs. uniprot
Match: A0A6H5KKZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKZ7_9PHAE)

HSP 1 Score: 442 bits (1137), Expect = 1.420e-152
Identity = 228/315 (72.38%), Postives = 256/315 (81.27%), Query Frame = 1 
Query:   25 QEARDTLDLIDQLLWVLGPADSGESGFVFFDLDETLITRDTCLIDGLGSTSALIARLEAKLGTSSEALHIIRQEMERDYYSADPRLVDPLLTRVVRALKVQGHLVFGLTSNALDTVHAPQILRTLAKYKIRFSAPEVRGELPKSGAICLDHPISRGIIFADNQQAIPHDKGEIIAEYVGLLLHNARRAATEHVGAGTTXXXXXXXXXXXXXXXXXXXXXXXXRTVGALASS---RRPRKCVLVDNTSRKCKRATETFARHAALAGGGMDLHAIHYTEAENLVDSPDALRQLRIILARLRARGLIGVDLVAEDILV 960
            +EA DTLDLIDQLLW LGPADSGE+GFVFFDLDETLITRDTCL+DGLGSTSAL+ARLEAKLG SSE L +IRQEMERDYY+AD RLVDPLL RV+R+LK+QGH VFGLTSNALD VHAP+IL TLAKYKIRFSAP+VRGELP+SGA+ +DHP+SRGIIF DNQQA+ HDKGEIIAEYVGLLL          VG  T                         RT  ALA S   RRPRKCVLVDNTS+KC+RA ETFARHAA+AGGG++LH +H+TEAEN+VDSP+ALRQLR+ILARL+ RGLIGVDL+AEDILV
Sbjct:   54 REASDTLDLIDQLLWALGPADSGETGFVFFDLDETLITRDTCLVDGLGSTSALMARLEAKLGPSSETLRVIRQEMERDYYNADLRLVDPLLARVIRSLKIQGHSVFGLTSNALDPVHAPRILETLAKYKIRFSAPDVRGELPRSGALMVDHPVSRGIIFGDNQQAVSHDKGEIIAEYVGLLLXXXXXXXXXXVGEKTAGDAARGGLSEPGGVKVGDGESSGGRT--ALAGSLSPRRPRKCVLVDNTSKKCERAVETFARHAAMAGGGLELHTLHFTEAENMVDSPEALRQLRVILARLQERGLIGVDLIAEDILV 366
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BLAST of mRNA_L-elsbetiae_contig10406.412.1 vs. uniprot
Match: D8LQ97_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ97_ECTSI)

HSP 1 Score: 341 bits (874), Expect = 1.550e-114
Identity = 174/241 (72.20%), Postives = 197/241 (81.74%), Query Frame = 1 
Query:  247 MERDYYSADPRLVDPLLTRVVRALKVQGHLVFGLTSNALDTVHAPQILRTLAKYKIRFSAPEVRGELPKSGAICLDHPISRGIIFADNQQAIPHDKGEIIAEYVGLLLHNARRAATEHVGAGTTXXXXXXXXXXXXXXXXXXXXXXXXRTVGALASS---RRPRKCVLVDNTSRKCKRATETFARHAALAGGGMDLHAIHYTEAENLVDSPDALRQLRIILARLRARGLIGVDLVAEDILV 960
            MERDYY+ADP+LVDPLL RV+RALK+QGH VFGLTSNALD VHAP+IL TLAKYKIRFSAP+VRGELP+SGA+ +DHP+SRGIIF DNQQA+ HDKGEIIAEYVGLLLHNARRA +EHVGA T                         RT  ALA S   +RPRKCVLVDNTS+KC+RA ETFARHAA AGGG++LH +H+TEAEN+VDSP+ALRQLRIILARL+ RGLIGVDL+AEDILV
Sbjct:    1 MERDYYNADPKLVDPLLARVIRALKIQGHSVFGLTSNALDPVHAPRILETLAKYKIRFSAPDVRGELPRSGALMVDHPVSRGIIFGDNQQAVSHDKGEIIAEYVGLLLHNARRAVSEHVGAKTAGDAARGGLSEPGGVKVGDGESSGGRT--ALAGSLSPKRPRKCVLVDNTSKKCERAAETFARHAAAAGGGLELHTLHFTEAENMVDSPEALRQLRIILARLKERGLIGVDLIAEDILV 239
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BLAST of mRNA_L-elsbetiae_contig10406.412.1 vs. uniprot
Match: A0A835YVM2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVM2_9STRA)

HSP 1 Score: 138 bits (347), Expect = 3.530e-36
Identity = 77/145 (53.10%), Postives = 99/145 (68.28%), Query Frame = 1 
Query:   37 DTLDLIDQLLWVLGPADSGESGFVFFDLDETLITRDTCLIDGLGSTSALIARLEAKL---GTS----SEALHIIRQEMERDYYSADPRLVDPLLTRVVRALKVQGHLVFGLTSNALDTVHAPQILRTLAKYKIRFSAPEVRGELP 450
            DT DLID LL V     + +  ++FFD+DETL+TRDTCL+ G   T+ L+ RL  +L   G+S    SE +  I+ EMER+YY +D +LVDPLL R+VR LKVQGH VFGLTSN   + H+   +  LA+YKIRFS P +RGELP
Sbjct:   37 DTDDLIDMLLTV----GTAKPAWIFFDIDETLVTRDTCLVHGFQHTTYLLERLRTRLAETGSSGARASEVVRKIQAEMEREYYDSDIKLVDPLLARLVRGLKVQGHHVFGLTSNEPFSEHSITTVAALAQYKIRFSDPWIRGELP 177
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10406.412.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KKZ7_9PHAE1.420e-15272.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQ97_ECTSI1.550e-11472.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YVM2_9STRA3.530e-3653.10Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10406contigL-elsbetiae_contig10406:3559..5830 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_005620.1
Exons4
Model size960
Cds size960
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10406.412.1prot_L-elsbetiae_contig10406.412.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10406 3559..5830 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815266.2916434-CDS-L-elsbetiae_contig10406:3558..41021622815266.2916434-CDS-L-elsbetiae_contig10406:3558..4102Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10406 3559..4102 -
1691682805.842328-CDS-L-elsbetiae_contig10406:3558..41021691682805.842328-CDS-L-elsbetiae_contig10406:3558..4102Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10406 3559..4102 -
1622815266.303022-CDS-L-elsbetiae_contig10406:4497..46111622815266.303022-CDS-L-elsbetiae_contig10406:4497..4611Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10406 4498..4611 -
1691682805.8610358-CDS-L-elsbetiae_contig10406:4497..46111691682805.8610358-CDS-L-elsbetiae_contig10406:4497..4611Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10406 4498..4611 -
1622815266.312739-CDS-L-elsbetiae_contig10406:4777..49031622815266.312739-CDS-L-elsbetiae_contig10406:4777..4903Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10406 4778..4903 -
1691682805.8749034-CDS-L-elsbetiae_contig10406:4777..49031691682805.8749034-CDS-L-elsbetiae_contig10406:4777..4903Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10406 4778..4903 -
1622815266.3252556-CDS-L-elsbetiae_contig10406:5654..58301622815266.3252556-CDS-L-elsbetiae_contig10406:5654..5830Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10406 5655..5830 -
1691682805.8859847-CDS-L-elsbetiae_contig10406:5654..58301691682805.8859847-CDS-L-elsbetiae_contig10406:5654..5830Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10406 5655..5830 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10406.412.1

>prot_L-elsbetiae_contig10406.412.1 ID=prot_L-elsbetiae_contig10406.412.1|Name=mRNA_L-elsbetiae_contig10406.412.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=320bp
MLFLSWFEQEARDTLDLIDQLLWVLGPADSGESGFVFFDLDETLITRDTC
LIDGLGSTSALIARLEAKLGTSSEALHIIRQEMERDYYSADPRLVDPLLT
RVVRALKVQGHLVFGLTSNALDTVHAPQILRTLAKYKIRFSAPEVRGELP
KSGAICLDHPISRGIIFADNQQAIPHDKGEIIAEYVGLLLHNARRAATEH
VGAGTTSSDGSSSSSSSSSSSGNSGGGGAARTVGALASSRRPRKCVLVDN
TSRKCKRATETFARHAALAGGGMDLHAIHYTEAENLVDSPDALRQLRIIL
ARLRARGLIGVDLVAEDILV
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mRNA from alignment at L-elsbetiae_contig10406:3559..5830-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10406.412.1 ID=mRNA_L-elsbetiae_contig10406.412.1|Name=mRNA_L-elsbetiae_contig10406.412.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2272bp|location=Sequence derived from alignment at L-elsbetiae_contig10406:3559..5830- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCTTCTTGTCCTGGTTTGAGCAGGAGGCGAGAGATACGCTGGATCT
CATCGACCAGCTTCTGTGGGTCTTAGGTCCGGCGGATTCGGGGGAGTCTG
GCTTCGTCTTCTTCGACCTTGATGAGACCTTGATCACTCGAGATACGTGC
CTCATCGATGGCCTCGGCAGTACAAGGTTCGTGGAATATTGAGGCCGGGT
CGGTTCCGCTTTGCTAGCGTTGAAAATTGCAGCACTGCTGCTGCTGCTGC
TGTTTTAAAAATAAACAATGAATCAAAGATGGAACCTAACCCACTGGAGC
AAGGACTCAATATGGGGTTCAAACGGTATTCCATACAGTGACATAATATT
TGGCGAAGCGAGCAGAAAAACAAACCTAAAATATCAGAAGAGTTCAACAT
CTCCCCTGCAAAGATTTGCGAGGTCGGCCAACAAGTATTCCGGCGGGTAG
ATGCCCGTCATGATGCCGTAATGTTGTCATCTACTTCAAAATAGGAACAC
ATTGCATTGTTGAACTAAATCAAAATGCTGGTTTAATATATGTGGGTTAC
TGCTGTTTTTGTAGCAGCTGTACTGCCACTCTGATGCTGGTGCCGTGTAA
ATGTGTAAATGTTGGAGCAGCCATGCAGGTTTCGGCTCCTTGCGGCACCT
TGCCACTCAGACAAGTCAATACTTGATCGCATGCGTGCGATGACAGCACC
CCTTTGCTCTGCCGAGACGTTTCCCCGCTCACGCTGCATAAATTCGGCAC
TCGCGTGTCGATCCCACTGATGCAACATTAACAATCCCCCGTGCGTTGTG
TATGTAGACCGATCTTCAGTGCCAGTCAGCCCTCGCGCTGCTTTGTCCCA
TACGTCTTGCCGCTCGCTCACGTTTTCTGGCGCGTTCGTCGATGCATTGC
TTTCGTGTTTTCACTATAATACCACAGCGCGCTGATCGCGAGACTGGAGG
CCAAGCTCGGCACCTCTAGCGAAGCTCTTCATATTATCCGCCAAGAGATG
GAGAGAGATTATTACAGCGCCGACCCGAGGCTCGTCGATCCGCTTTTAAC
AAGGTTTGTACGAAAAGAGCGTGCGATGCCCCCCCCCCGGAATACACGGC
AACAACGCCCTTTCCCGCTTCGACATCCGCGACTCTTCGTTGCGCTGGAA
CGTTTTCACCGAGCCTTGTAATTTGTATTCCTTCTCCCCTCCTCCCTTCC
CCTCCCCTTGTGATTCCAGAGTCGTTCGGGCGCTCAAGGTCCAAGGGCAC
CTCGTGTTCGGGTTAACTTCCAACGCGCTAGACACTGTCCATGCGCCGCA
GATCCTCCGGACCTTGGCCAAGTACAAAATCAGGTGAGGTCTCCTTACCC
TTATCGTGGTCTCTGGGCGTTCTTTTGGTGACTGCGCTCTTTTGCTGTAG
ACTTGGGCCGGGCACCTGTGTGTTTTGTGCTCTGGTGGGTAAGATATGTC
CGTAGGATGGCGCGTGAGCCCTGTTTGGGGGAGTACAGGGCGCATCGCTA
GGTTTGGGGAGCGGTGTACGACATCGAAAGGCCACACGCGGAAAACGTAT
CTCAAGCAACATTCAGCCGGTTTACCCCGTACTTGCCTTGAACGGGCGGA
ATCTACTCCGACAGCAGTTGCTTCGCCACCTACTTTCGCGTAACGATGTT
GCACTGTGACGCTGTTCCGTGCGTCTGCTGCGTGCTCTTGCTGTGTACCG
ATCCTCTATACATGATCCCCCCCAAAAGATTTTCTGCTCCGGAGGTCCGA
GGAGAGCTGCCGAAGAGCGGCGCTATTTGCTTGGACCACCCTATCAGTCG
CGGCATCATATTTGCCGACAATCAGCAGGCGATCCCTCACGACAAGGGAG
AGATCATCGCGGAGTACGTGGGCTTGCTCCTGCACAACGCCCGCCGCGCA
GCTACGGAGCACGTGGGGGCCGGCACGACCAGTAGTGACGGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCGGCAACAGCGGCGGCGGCGGGGCGG
CAAGGACGGTCGGCGCTCTCGCCTCATCCCGGCGGCCTCGAAAGTGCGTC
CTGGTGGACAACACGTCCAGGAAGTGCAAGAGGGCCACGGAGACTTTCGC
TCGACACGCCGCCTTGGCGGGGGGCGGGATGGACCTGCACGCGATCCACT
ACACCGAGGCCGAGAACCTGGTGGACTCGCCCGACGCCCTGAGGCAGCTC
CGGATAATCCTGGCGAGGCTGCGGGCGAGGGGGCTCATCGGAGTCGACCT
CGTTGCGGAGGATATTTTGGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10406:3559..5830-

>mRNA_L-elsbetiae_contig10406.412.1 ID=mRNA_L-elsbetiae_contig10406.412.1|Name=mRNA_L-elsbetiae_contig10406.412.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1920bp|location=Sequence derived from alignment at L-elsbetiae_contig10406:3559..5830- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCTTCTTGTCCTGGTTTGAGCAGGAGGCGAGAGATACGCTGGATCT
CATCGACCAGCTTCTGTGGGTCTTAGGTCCGGCGGATTCGGGGGAGTCTG
GCTTCGTCTTCTTCGACCTTGATGAGACCTTGATCACTCGAGATACGTGC
CTCATCGATGGCCTCGGCAGTACAAGATGCTCTTCTTGTCCTGGTTTGAG
CAGGAGGCGAGAGATACGCTGGATCTCATCGACCAGCTTCTGTGGGTCTT
AGGTCCGGCGGATTCGGGGGAGTCTGGCTTCGTCTTCTTCGACCTTGATG
AGACCTTGATCACTCGAGATACGTGCCTCATCGATGGCCTCGGCAGTACA
AGCGCGCTGATCGCGAGACTGGAGGCCAAGCTCGGCACCTCTAGCGAAGC
TCTTCATATTATCCGCCAAGAGATGGAGAGAGATTATTACAGCGCCGACC
CGAGGCTCGTCGATCCGCTTTTAACAAGCGCGCTGATCGCGAGACTGGAG
GCCAAGCTCGGCACCTCTAGCGAAGCTCTTCATATTATCCGCCAAGAGAT
GGAGAGAGATTATTACAGCGCCGACCCGAGGCTCGTCGATCCGCTTTTAA
CAAGAGTCGTTCGGGCGCTCAAGGTCCAAGGGCACCTCGTGTTCGGGTTA
ACTTCCAACGCGCTAGACACTGTCCATGCGCCGCAGATCCTCCGGACCTT
GGCCAAGTACAAAATCAGAGTCGTTCGGGCGCTCAAGGTCCAAGGGCACC
TCGTGTTCGGGTTAACTTCCAACGCGCTAGACACTGTCCATGCGCCGCAG
ATCCTCCGGACCTTGGCCAAGTACAAAATCAGATTTTCTGCTCCGGAGGT
CCGAGGAGAGCTGCCGAAGAGCGGCGCTATTTGCTTGGACCACCCTATCA
GTCGCGGCATCATATTTGCCGACAATCAGCAGGCGATCCCTCACGACAAG
GGAGAGATCATCGCGGAGTACGTGGGCTTGCTCCTGCACAACGCCCGCCG
CGCAGCTACGGAGCACGTGGGGGCCGGCACGACCAGTAGTGACGGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAACAGCGGCGGCGGCGGG
GCGGCAAGGACGGTCGGCGCTCTCGCCTCATCCCGGCGGCCTCGAAAGTG
CGTCCTGGTGGACAACACGTCCAGGAAGTGCAAGAGGGCCACGGAGACTT
TCGCTCGACACGCCGCCTTGGCGGGGGGCGGGATGGACCTGCACGCGATC
CACTACACCGAGGCCGAGAACCTGGTGGACTCGCCCGACGCCCTGAGGCA
GCTCCGGATAATCCTGGCGAGGCTGCGGGCGAGGGGGCTCATCGGAGTCG
ACCTCGTTGCGGAGGATATTTTGGTGATTTTCTGCTCCGGAGGTCCGAGG
AGAGCTGCCGAAGAGCGGCGCTATTTGCTTGGACCACCCTATCAGTCGCG
GCATCATATTTGCCGACAATCAGCAGGCGATCCCTCACGACAAGGGAGAG
ATCATCGCGGAGTACGTGGGCTTGCTCCTGCACAACGCCCGCCGCGCAGC
TACGGAGCACGTGGGGGCCGGCACGACCAGTAGTGACGGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCGGCAACAGCGGCGGCGGCGGGGCGGCA
AGGACGGTCGGCGCTCTCGCCTCATCCCGGCGGCCTCGAAAGTGCGTCCT
GGTGGACAACACGTCCAGGAAGTGCAAGAGGGCCACGGAGACTTTCGCTC
GACACGCCGCCTTGGCGGGGGGCGGGATGGACCTGCACGCGATCCACTAC
ACCGAGGCCGAGAACCTGGTGGACTCGCCCGACGCCCTGAGGCAGCTCCG
GATAATCCTGGCGAGGCTGCGGGCGAGGGGGCTCATCGGAGTCGACCTCG
TTGCGGAGGATATTTTGGTG
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