mRNA_L-elsbetiae_contig15975.4119.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15975.4119.1
Unique NamemRNA_L-elsbetiae_contig15975.4119.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15975.4119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15975contigL-elsbetiae_contig15975:1606..3448 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1093
Cds size1089
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815657.6347136-CDS-L-elsbetiae_contig15975:1607..25301622815657.6347136-CDS-L-elsbetiae_contig15975:1607..2530Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15975 1608..2530 -
1691683019.1907277-CDS-L-elsbetiae_contig15975:1607..25301691683019.1907277-CDS-L-elsbetiae_contig15975:1607..2530Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15975 1608..2530 -
1622815657.647296-CDS-L-elsbetiae_contig15975:3282..34481622815657.647296-CDS-L-elsbetiae_contig15975:3282..3448Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15975 3283..3448 -
1691683019.1994028-CDS-L-elsbetiae_contig15975:3282..34481691683019.1994028-CDS-L-elsbetiae_contig15975:3282..3448Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15975 3283..3448 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15975.4119.1prot_L-elsbetiae_contig15975.4119.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15975 1608..3448 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15975.4119.1

>prot_L-elsbetiae_contig15975.4119.1 ID=prot_L-elsbetiae_contig15975.4119.1|Name=mRNA_L-elsbetiae_contig15975.4119.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=363bp
AGASSSSLSSLAATTTGGLGRGGGAPRASKAAPGGGGPANSKGSRRGPSS
AEALRAAESAGNGHQSRNPPPSPFRQRRAKAAAAAAPAAAPAAATRGGAK
RPSTPASPSSTRASSSAGGNGVGGSHHASSSSSPPSATSSASASASASSM
AAARRRRNGVVPGSAAAASASSSPAAAAETKLPSTTATAKTVNTRKRRPT
TATATTPTSTSTTRSSPGKATATSSPGKATATSSPGKATATAAAASATAA
AAAASTARSPDPKRSSGGGGGGGGTAATSKSAKAPKAKAKRLSSSSAASA
AESETTAAAAGVRPLVINSSSPNTTPTGSSSSWAAGLSRPGVMAAAAAAA
SSPLLVSPDGFLA
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mRNA from alignment at L-elsbetiae_contig15975:1606..3448-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15975.4119.1 ID=mRNA_L-elsbetiae_contig15975.4119.1|Name=mRNA_L-elsbetiae_contig15975.4119.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1843bp|location=Sequence derived from alignment at L-elsbetiae_contig15975:1606..3448- (Laminarionema elsbetiae ELsaHSoW15)
GCGGGGGCTTCGTCTTCGTCGTTGTCGTCGCTGGCGGCAACGACGACCGG
CGGTCTTGGTCGCGGAGGGGGGGCGCCCCGTGCCTCGAAGGCGGCGCCCG
GGGGAGGGGGCCCGGCGAACTCGAAGGGCTCGAGGAGAGGACCGTCCTCT
GCAGAAGCGTTGAGAGGTGCATTCCATTTTGTCAGTTGCGGTTTCTAGTT
TTGTACTGAACGTTACATAGCGGTGTTTTGTGTGTTCAAACCTGTGGAAC
AAAAAATCGGTCTGCGTGCGTACAGCGATAATGTGTACACTAAGGGGGGC
CGCTGTTGCTGTAGACACGCTGCAATATCCCCCCGTCACCGCCGCCCCGG
CTACAGCAGTAGTGGTACGAAACCAGCTCGTTTTTTTGGGTTGTTTTTGC
GTGTGGTACCATATACTTTATGTATTTAGTAGGGGTGCCTCCCGCGTGGG
GAGACTGGAACCGGGTACCCGGTGGGGTCTCGGTGGTTGGAACCAGATAC
CCGTATACCCATGGCGTCCACGCGAACAATAGGTGGTACCCCATCCCTGG
GTGTATACCCATGGCGTTCTCTGGGGGCGCCGTGTATCGTAAAATAGGGG
GGTACTAAAAAGTGGAACCGGTTCCCGGACGGGTACTGGAGTACCCGGGT
ACGGAATCCGGGTACCCGGGTATTCCCCACGCGGGAGACACCCCTAGTAT
TTAGGAGTGTAGACAGTTTTAGTGCATTTATGTAACACAGGTACAGCTCT
TGCTTTTGTTGTTCGTGTTTTCGCTCGCACCGCTGTTGGCATTGCATTTA
TTTTTATGCACACTACATGCATATGTACATCCGTGCGTTGATGTAAGAGC
TGAGCGCATGCATGCATGCATCCACGCCCCTTTGTTTCTCTTGCCCCGTG
TGCCCTCGCCGAAAGCAGCGGCTGAATCGGCCGGGAACGGGCACCAGTCC
AGAAACCCGCCGCCATCCCCTTTCCGACAACGTCGCGCCAAGGCCGCCGC
CGCCGCCGCCCCCGCCGCCGCCCCCGCCGCCGCTACACGCGGGGGCGCGA
AACGGCCATCGACACCGGCATCGCCTTCTTCCACGCGGGCCTCGTCATCG
GCAGGCGGTAACGGCGTCGGCGGCAGTCATCACGCCTCCTCCTCCTCCTC
CCCCCCCTCGGCGACTTCTTCCGCGTCCGCGTCCGCGTCCGCATCGTCGA
TGGCGGCGGCGAGGAGGCGACGGAACGGGGTGGTTCCTGGGTCGGCCGCT
GCAGCTTCTGCCTCCTCCAGCCCGGCGGCGGCGGCGGAGACGAAACTTCC
GTCAACGACGGCGACCGCCAAGACGGTCAACACGAGGAAGCGCCGCCCCA
CCACCGCCACCGCCACCACCCCGACCTCGACCTCGACAACACGATCGTCG
CCGGGAAAGGCAACAGCGACATCGTCGCCGGGAAAGGCAACAGCGACATC
GTCGCCGGGAAAGGCAACAGCGACAGCAGCAGCGGCGTCAGCAACGGCGG
CGGCGGCAGCGGCTTCGACCGCAAGGTCTCCGGATCCGAAAAGGTCATCC
GGCGGCGGCGGCGGCGGCGGCGGCACTGCCGCCACCAGCAAATCCGCCAA
AGCCCCCAAAGCCAAAGCCAAGCGGTTATCGTCGTCTTCGGCCGCGTCCG
CGGCCGAATCGGAGACGACGGCGGCGGCGGCGGGAGTCCGCCCGCTGGTG
ATCAACAGCAGCAGCCCCAACACCACGCCGACCGGGAGTTCGTCTTCATG
GGCAGCGGGACTTTCGAGACCGGGGGTGATGGCGGCGGCGGCGGCAGCGG
CGTCCTCTCCCCTGCTCGTGTCCCCCGATGGTTTCTTGGCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15975:1606..3448-

>mRNA_L-elsbetiae_contig15975.4119.1 ID=mRNA_L-elsbetiae_contig15975.4119.1|Name=mRNA_L-elsbetiae_contig15975.4119.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2178bp|location=Sequence derived from alignment at L-elsbetiae_contig15975:1606..3448- (Laminarionema elsbetiae ELsaHSoW15)
GCGGGGGCTTCGTCTTCGTCGTTGTCGTCGCTGGCGGCAACGACGACCGG
CGGTCTTGGTCGCGGAGGGGGGGCGCCCCGTGCCTCGAAGGCGGCGCCCG
GGGGAGGGGGCCCGGCGAACTCGAAGGGCTCGAGGAGAGGACCGTCCTCT
GCAGAAGCGTTGAGAGGCGGGGGCTTCGTCTTCGTCGTTGTCGTCGCTGG
CGGCAACGACGACCGGCGGTCTTGGTCGCGGAGGGGGGGCGCCCCGTGCC
TCGAAGGCGGCGCCCGGGGGAGGGGGCCCGGCGAACTCGAAGGGCTCGAG
GAGAGGACCGTCCTCTGCAGAAGCGTTGAGAGCGGCTGAATCGGCCGGGA
ACGGGCACCAGTCCAGAAACCCGCCGCCATCCCCTTTCCGACAACGTCGC
GCCAAGGCCGCCGCCGCCGCCGCCCCCGCCGCCGCCCCCGCCGCCGCTAC
ACGCGGGGGCGCGAAACGGCCATCGACACCGGCATCGCCTTCTTCCACGC
GGGCCTCGTCATCGGCAGGCGGTAACGGCGTCGGCGGCAGTCATCACGCC
TCCTCCTCCTCCTCCCCCCCCTCGGCGACTTCTTCCGCGTCCGCGTCCGC
GTCCGCATCGTCGATGGCGGCGGCGAGGAGGCGACGGAACGGGGTGGTTC
CTGGGTCGGCCGCTGCAGCTTCTGCCTCCTCCAGCCCGGCGGCGGCGGCG
GAGACGAAACTTCCGTCAACGACGGCGACCGCCAAGACGGTCAACACGAG
GAAGCGCCGCCCCACCACCGCCACCGCCACCACCCCGACCTCGACCTCGA
CAACACGATCGTCGCCGGGAAAGGCAACAGCGACATCGTCGCCGGGAAAG
GCAACAGCGACATCGTCGCCGGGAAAGGCAACAGCGACAGCAGCAGCGGC
GTCAGCAACGGCGGCGGCGGCAGCGGCTTCGACCGCAAGGTCTCCGGATC
CGAAAAGGTCATCCGGCGGCGGCGGCGGCGGCGGCGGCACTGCCGCCACC
AGCAAATCCGCCAAAGCCCCCAAAGCCAAAGCCAAGCGGTTATCGTCGTC
TTCGGCCGCGTCCGCGGCCGAATCGGAGACGACGGCGGCGGCGGCGGGAG
TCCGCCCGCTGGTGATCAACAGCAGCAGCCCCAACACCACGCCGACCGGG
AGTTCGTCTTCATGGGCAGCGGGACTTTCGAGACCGGGGGTGATGGCGGC
GGCGGCGGCAGCGGCGTCCTCTCCCCTGCTCGTGTCCCCCGATGGTTTCT
TGGCGCGGCTGAATCGGCCGGGAACGGGCACCAGTCCAGAAACCCGCCGC
CATCCCCTTTCCGACAACGTCGCGCCAAGGCCGCCGCCGCCGCCGCCCCC
GCCGCCGCCCCCGCCGCCGCTACACGCGGGGGCGCGAAACGGCCATCGAC
ACCGGCATCGCCTTCTTCCACGCGGGCCTCGTCATCGGCAGGCGGTAACG
GCGTCGGCGGCAGTCATCACGCCTCCTCCTCCTCCTCCCCCCCCTCGGCG
ACTTCTTCCGCGTCCGCGTCCGCGTCCGCATCGTCGATGGCGGCGGCGAG
GAGGCGACGGAACGGGGTGGTTCCTGGGTCGGCCGCTGCAGCTTCTGCCT
CCTCCAGCCCGGCGGCGGCGGCGGAGACGAAACTTCCGTCAACGACGGCG
ACCGCCAAGACGGTCAACACGAGGAAGCGCCGCCCCACCACCGCCACCGC
CACCACCCCGACCTCGACCTCGACAACACGATCGTCGCCGGGAAAGGCAA
CAGCGACATCGTCGCCGGGAAAGGCAACAGCGACATCGTCGCCGGGAAAG
GCAACAGCGACAGCAGCAGCGGCGTCAGCAACGGCGGCGGCGGCAGCGGC
TTCGACCGCAAGGTCTCCGGATCCGAAAAGGTCATCCGGCGGCGGCGGCG
GCGGCGGCGGCACTGCCGCCACCAGCAAATCCGCCAAAGCCCCCAAAGCC
AAAGCCAAGCGGTTATCGTCGTCTTCGGCCGCGTCCGCGGCCGAATCGGA
GACGACGGCGGCGGCGGCGGGAGTCCGCCCGCTGGTGATCAACAGCAGCA
GCCCCAACACCACGCCGACCGGGAGTTCGTCTTCATGGGCAGCGGGACTT
TCGAGACCGGGGGTGATGGCGGCGGCGGCGGCAGCGGCGTCCTCTCCCCT
GCTCGTGTCCCCCGATGGTTTCTTGGCG
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