mRNA_L-elsbetiae_contig15971.4118.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15971.4118.1
Unique NamemRNA_L-elsbetiae_contig15971.4118.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15971.4118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15971contigL-elsbetiae_contig15971:1776..2608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size833
Cds size438
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815657.5910614-CDS-L-elsbetiae_contig15971:1775..22131622815657.5910614-CDS-L-elsbetiae_contig15971:1775..2213Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15971 1776..2213 +
1691683019.1727557-CDS-L-elsbetiae_contig15971:1775..22131691683019.1727557-CDS-L-elsbetiae_contig15971:1775..2213Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15971 1776..2213 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815657.601793-UTR-L-elsbetiae_contig15971:2213..26081622815657.601793-UTR-L-elsbetiae_contig15971:2213..2608Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15971 2214..2608 +
1691683019.1823702-UTR-L-elsbetiae_contig15971:2213..26081691683019.1823702-UTR-L-elsbetiae_contig15971:2213..2608Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15971 2214..2608 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15971.4118.1prot_L-elsbetiae_contig15971.4118.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15971 1776..2213 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15971.4118.1

>prot_L-elsbetiae_contig15971.4118.1 ID=prot_L-elsbetiae_contig15971.4118.1|Name=mRNA_L-elsbetiae_contig15971.4118.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=146bp
QLLPFPPTATPPSTAVITRRGPVSFRRGPVSLCRGPVGSRPVPLSRSNSP
PRNGNSTSWLGPRRRTDRQTHDTFIPLFSLGNQSGGGSHEVSQREVCRCC
SRYMHRPPSPRVPSFPPRTLIVFEARASTGCCIYLVPRVYYTKTY*
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mRNA from alignment at L-elsbetiae_contig15971:1776..2608+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15971.4118.1 ID=mRNA_L-elsbetiae_contig15971.4118.1|Name=mRNA_L-elsbetiae_contig15971.4118.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=833bp|location=Sequence derived from alignment at L-elsbetiae_contig15971:1776..2608+ (Laminarionema elsbetiae ELsaHSoW15)
CAGCTGTTGCCGTTCCCCCCCACAGCTACCCCACCCAGTACCGCCGTCAT
CACCCGCAGGGGCCCCGTGAGCTTCCGCAGGGGACCCGTGAGCTTGTGCA
GGGGGCCCGTGGGCTCCCGCCCGGTCCCCCTGTCCCGATCAAACTCACCA
CCTCGAAATGGCAACTCAACGAGCTGGCTGGGGCCGCGCAGGCGGACAGA
CAGACAAACCCACGACACCTTCATCCCCCTGTTTTCACTTGGGAATCAGT
CGGGGGGGGGGTCCCACGAGGTATCGCAAAGAGAGGTATGTAGGTGCTGC
AGCCGCTACATGCACCGCCCCCCCTCCCCCCGAGTTCCCAGCTTTCCTCC
ACGCACTCTAATTGTTTTCGAAGCACGCGCGTCTACTGGCTGCTGTATAT
ACCTTGTACCTCGTGTCTACTACACAAAAACCTACTGAGTATATACCTAT
ATATAATGAATTTCGCCGGCCGTCGCCGGTGGTTTTGGGCACGAAATGCG
CCGCCCGAGGGGGGGGGAGAAGCCACATCCTCTCTATTGTAGTGCGTGTA
TACGAATGCGTGCCTTCGTTCTGTGTGCCCATGTCGACGAAGTGACGTCT
AACTTGAAAAAAAAAATGACGAAGCTCCGACGTTGAGTTAGTTAACTATC
TTACCTACATGGTACTAAAATCCTACACAAGCGCCTCTCTCTGGCCTTAA
TAAAATAAACTCACATGCCAACAAACCTGGATCACACACCCACCCGTCCT
CCGCAGGAGGGAAGAAGGAGGAAAACGCGGAGGGGAACAGAGAGGGAATA
AGAAAAAAGAAGAAGAAAAAAAAAGACTTACGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15971:1776..2608+

>mRNA_L-elsbetiae_contig15971.4118.1 ID=mRNA_L-elsbetiae_contig15971.4118.1|Name=mRNA_L-elsbetiae_contig15971.4118.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=876bp|location=Sequence derived from alignment at L-elsbetiae_contig15971:1776..2608+ (Laminarionema elsbetiae ELsaHSoW15)
CAGCTGTTGCCGTTCCCCCCCACAGCTACCCCACCCAGTACCGCCGTCAT
CACCCGCAGGGGCCCCGTGAGCTTCCGCAGGGGACCCGTGAGCTTGTGCA
GGGGGCCCGTGGGCTCCCGCCCGGTCCCCCTGTCCCGATCAAACTCACCA
CCTCGAAATGGCAACTCAACGAGCTGGCTGGGGCCGCGCAGGCGGACAGA
CAGACAAACCCACGACACCTTCATCCCCCTGTTTTCACTTGGGAATCAGT
CGGGGGGGGGGTCCCACGAGGTATCGCAAAGAGAGGTATGTAGGTGCTGC
AGCCGCTACATGCACCGCCCCCCCTCCCCCCGAGTTCCCAGCTTTCCTCC
ACGCACTCTAATTGTTTTCGAAGCACGCGCGTCTACTGGCTGCTGTATAT
ACCTTGTACCTCGTGTCTACTACACAAAAACCTACTGACAGCTGTTGCCG
TTCCCCCCCACAGCTACCCCACCCAGTACCGCCGTCATCACCCGCAGGGG
CCCCGTGAGCTTCCGCAGGGGACCCGTGAGCTTGTGCAGGGGGCCCGTGG
GCTCCCGCCCGGTCCCCCTGTCCCGATCAAACTCACCACCTCGAAATGGC
AACTCAACGAGCTGGCTGGGGCCGCGCAGGCGGACAGACAGACAAACCCA
CGACACCTTCATCCCCCTGTTTTCACTTGGGAATCAGTCGGGGGGGGGGT
CCCACGAGGTATCGCAAAGAGAGGTATGTAGGTGCTGCAGCCGCTACATG
CACCGCCCCCCCTCCCCCCGAGTTCCCAGCTTTCCTCCACGCACTCTAAT
TGTTTTCGAAGCACGCGCGTCTACTGGCTGCTGTATATACCTTGTACCTC
GTGTCTACTACACAAAAACCTACTGA
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