mRNA_L-elsbetiae_contig15970.4117.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15970.4117.1
Unique NamemRNA_L-elsbetiae_contig15970.4117.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15970.4117.1 vs. uniprot
Match: D8LRI5_ECTSI (Dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRI5_ECTSI)

HSP 1 Score: 188 bits (478), Expect = 4.860e-53
Identity = 101/126 (80.16%), Postives = 104/126 (82.54%), Query Frame = 1 
Query:    4 LLSGRTLARSFRV-----------RIRASIAQFQQELIGHVREAVSAIQDKFRHRYEARLRRALASLRDIPPVAGKILWARQMERQLRLLSMRLSDVLGEGWENHVDGRPLKAVCDELLRNLDTKR 348
            L + RT    FRV           RIRASIAQFQQELIGHVREAVSAIQDKFRHRYE    +ALASLRDIPPVAGKILWARQMERQLRLLS RLSDVLGEGWENHVDGRPLKAVCDELLRNLDT+R
Sbjct:  614 LRAARTAEEMFRVFAKFNPLFVRPRIRASIAQFQQELIGHVREAVSAIQDKFRHRYEVSEAKALASLRDIPPVAGKILWARQMERQLRLLSTRLSDVLGEGWENHVDGRPLKAVCDELLRNLDTQR 739
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BLAST of mRNA_L-elsbetiae_contig15970.4117.1 vs. uniprot
Match: A0A6H5KY19_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY19_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 1.200e-52
Identity = 100/126 (79.37%), Postives = 104/126 (82.54%), Query Frame = 1 
Query:    4 LLSGRTLARSFRV-----------RIRASIAQFQQELIGHVREAVSAIQDKFRHRYEARLRRALASLRDIPPVAGKILWARQMERQLRLLSMRLSDVLGEGWENHVDGRPLKAVCDELLRNLDTKR 348
            L + RT    FRV           RIRASIAQFQQELIGHVREAVSAIQDKFRHRYE    +ALA+LRDIPPVAGKILWARQMERQLRLLS RLSDVLGEGWENHVDGRPLKAVCDELLRNLDT+R
Sbjct:  152 LRAARTAEEMFRVFAKFNPLFVRPRIRASIAQFQQELIGHVREAVSAIQDKFRHRYEVSEAKALATLRDIPPVAGKILWARQMERQLRLLSTRLSDVLGEGWENHVDGRPLKAVCDELLRNLDTQR 277
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BLAST of mRNA_L-elsbetiae_contig15970.4117.1 vs. uniprot
Match: A0A4D9DDZ5_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DDZ5_9STRA)

HSP 1 Score: 129 bits (323), Expect = 3.760e-32
Identity = 63/103 (61.17%), Postives = 79/103 (76.70%), Query Frame = 1 
Query:   37 RVRIRASIAQFQQELIGHVREAVSAIQDKFRHRYEARLRRALASLRDIPPVAGKILWARQMERQLRLLSMRLSDVLGEGWENHVDGRPLKAVCDELLRNLDTK 345
            R RIRA+IAQ+Q  LI HVR+AV  +Q+ F  RYE    + LA+LRD+PPVAGKILWAR +ERQL +L  RL +VLGEGWE HVDG+ LK VC+EL+R L+ +
Sbjct:  656 RPRIRAAIAQYQAMLIAHVRDAVKKLQETFTARYEGSEAQVLATLRDVPPVAGKILWARLLERQLLMLMARLEEVLGEGWEKHVDGKQLKEVCEELIRKLNAE 758
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BLAST of mRNA_L-elsbetiae_contig15970.4117.1 vs. uniprot
Match: A0A835Z350_9STRA (Dynein heavy chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z350_9STRA)

HSP 1 Score: 120 bits (300), Expect = 4.730e-29
Identity = 58/102 (56.86%), Postives = 74/102 (72.55%), Query Frame = 1 
Query:   37 RVRIRASIAQFQQELIGHVREAVSAIQDKFRHRYEARLRRALASLRDIPPVAGKILWARQMERQLRLLSMRLSDVLGEGWENHVDGRPLKAVCDELLRNLDT 342
            R R+R++ A  Q EL+ HVR AV+A+ DKF  RY+    + +A LRDIPP++GKILWARQ+ERQL+LL  R+  VLG GWE H +GR L+A CD LL NL T
Sbjct:  523 RPRVRSAAAHHQAELLAHVRRAVAALADKFSQRYDDSGAKMVAGLRDIPPLSGKILWARQIERQLQLLMQRMEAVLGAGWEQHAEGRQLRATCDVLLSNLST 624
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BLAST of mRNA_L-elsbetiae_contig15970.4117.1 vs. uniprot
Match: A0A7S1FT33_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FT33_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.720e-26
Identity = 55/106 (51.89%), Postives = 75/106 (70.75%), Query Frame = 1 
Query:   34 FRVRIRASIAQFQQELIGHVREAVSAIQDKFRHRYEARLRRALASLRDIPPVAGKILWARQMERQLRLLSMRLSDVLGEGWENHVDGRPLKAVCDELLRNLDTKRW 351
            FR RIR ++  FQ +L+ +V EA+  +QDKF  +YE    + L+ LRD+PP AGKILWA+QMER++RLL  R+ DVLG GWEN ++G  L+ + DELL  LDT  +
Sbjct:  360 FRERIRIAMKGFQADLVRNVSEAMKKLQDKFAAQYENGGAKTLSDLRDVPPTAGKILWAKQMERRVRLLIRRVGDVLGPGWENQLEGVKLRRMADELLEKLDTSNF 465
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BLAST of mRNA_L-elsbetiae_contig15970.4117.1 vs. uniprot
Match: B5YNC3_THAPS (Cytoplasmic dynein heavy chain-like protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YNC3_THAPS)

HSP 1 Score: 110 bits (274), Expect = 1.510e-25
Identity = 51/105 (48.57%), Postives = 74/105 (70.48%), Query Frame = 1 
Query:   37 RVRIRASIAQFQQELIGHVREAVSAIQDKFRHRYEARLRRALASLRDIPPVAGKILWARQMERQLRLLSMRLSDVLGEGWENHVDGRPLKAVCDELLRNLDTKRW 351
            R R+RA++ +FQ +L+  V +AV  +Q KF H+YE+     +A++R IPPV+GKILWA+QMERQ+  L  R+SDVLG  W   ++GR L+  CDELL  LD++ +
Sbjct:  387 RSRVRAAVKEFQLQLMNTVGQAVQKLQSKFTHKYESSSASCIATIRGIPPVSGKILWAKQMERQVHALMKRMSDVLGREWGQQLEGRQLRRSCDELLSKLDSRAY 491
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BLAST of mRNA_L-elsbetiae_contig15970.4117.1 vs. uniprot
Match: A0A7S2UJ65_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UJ65_9STRA)

HSP 1 Score: 105 bits (263), Expect = 2.880e-24
Identity = 53/105 (50.48%), Postives = 71/105 (67.62%), Query Frame = 1 
Query:   37 RVRIRASIAQFQQELIGHVREAVSAIQDKFRHRYEARLRRALASLRDIPPVAGKILWARQMERQLRLLSMRLSDVLGEGWENHVDGRPLKAVCDELLRNLDTKRW 351
            R R+RA++ +FQ +LI  V +AV  +Q+KF  +YE+     ++ LR IPPVAGKILWARQMERQ+  L  R+ DVLG  W  H++GR L+   DELL  LD K +
Sbjct:  332 RTRVRAAVKEFQIQLISTVGQAVEKLQNKFTCKYESSPAARISRLRGIPPVAGKILWARQMERQVHTLMKRMGDVLGPNWGQHLEGRQLRRSGDELLSKLDAKTF 436
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BLAST of mRNA_L-elsbetiae_contig15970.4117.1 vs. uniprot
Match: A0A7S2V8Z6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2V8Z6_9STRA)

HSP 1 Score: 106 bits (264), Expect = 3.230e-24
Identity = 51/105 (48.57%), Postives = 72/105 (68.57%), Query Frame = 1 
Query:   37 RVRIRASIAQFQQELIGHVREAVSAIQDKFRHRYEARLRRALASLRDIPPVAGKILWARQMERQLRLLSMRLSDVLGEGWENHVDGRPLKAVCDELLRNLDTKRW 351
            R R+RA++ +FQ +LI  V +AV  +Q KF  +YE+     ++ LR IPPVAGKILWA+QMERQ++ L  R+S+VLG  W   ++GR L+  CDELL  LD + +
Sbjct:  149 RTRVRAAVKEFQMQLIATVADAVGKLQSKFTLKYESSPAARISRLRGIPPVAGKILWAKQMERQVQTLVERMSNVLGPNWGQQLEGRQLRKTCDELLAKLDARTF 253
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BLAST of mRNA_L-elsbetiae_contig15970.4117.1 vs. uniprot
Match: A0A482SSB2_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SSB2_9ARCH)

HSP 1 Score: 105 bits (263), Expect = 4.480e-24
Identity = 52/99 (52.53%), Postives = 68/99 (68.69%), Query Frame = 1 
Query:   46 IRASIAQFQQELIGHVREAVSAIQDKFRHRYEARLRRALASLRDIPPVAGKILWARQMERQLRLLSMRLSDVLGEGWENHVDGRPLKAVCDELLRNLDT 342
            IR ++  F+  L+  VR+ V  +QDKFR RY+    +  A L DIPP++G+I+WARQ+E  L LL  R+ DVLG GWE+HVDG+ LK VCDEL   LDT
Sbjct:  404 IRNAVNSFRATLMKSVRDDVRKLQDKFRLRYDDSHEKITAELHDIPPLSGRIIWARQIENHLSLLMKRIQDVLGVGWEDHVDGKQLKDVCDELKSYLDT 502
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BLAST of mRNA_L-elsbetiae_contig15970.4117.1 vs. uniprot
Match: A0A7S3PWP0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PWP0_9STRA)

HSP 1 Score: 105 bits (261), Expect = 8.570e-24
Identity = 51/105 (48.57%), Postives = 70/105 (66.67%), Query Frame = 1 
Query:   37 RVRIRASIAQFQQELIGHVREAVSAIQDKFRHRYEARLRRALASLRDIPPVAGKILWARQMERQLRLLSMRLSDVLGEGWENHVDGRPLKAVCDELLRNLDTKRW 351
            R R+  ++ +FQ +LI  V EAV  +Q KF H+YE+      +++R IPPV+GKILWARQ+ERQ+  L  R+SDVLG  W  H++GR L+   DELL  LD K +
Sbjct:  639 RTRVHNAVKEFQVQLIATVGEAVQKLQSKFTHKYESSPASRFSTIRGIPPVSGKILWARQIERQVNALMKRMSDVLGPNWGQHLEGRQLRRSGDELLSKLDAKAF 743
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15970.4117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRI5_ECTSI4.860e-5380.16Dynein heavy chain n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5KY19_9PHAE1.200e-5279.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4D9DDZ5_9STRA3.760e-3261.17Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A835Z350_9STRA4.730e-2956.86Dynein heavy chain n=1 Tax=Tribonema minus TaxID=3... [more]
A0A7S1FT33_9STRA1.720e-2651.89Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
B5YNC3_THAPS1.510e-2548.57Cytoplasmic dynein heavy chain-like protein n=1 Ta... [more]
A0A7S2UJ65_9STRA2.880e-2450.48Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S2V8Z6_9STRA3.230e-2448.57Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A482SSB2_9ARCH4.480e-2452.53Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S3PWP0_9STRA8.570e-2448.57Hypothetical protein (Fragment) n=1 Tax=Chaetocero... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15970contigL-elsbetiae_contig15970:496..1297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score191.8
Seed ortholog evalue1.9e-46
Seed eggNOG ortholog2880.D8LRI5
KEGG koko:K10413
KEGG Pathwayko04145,ko04962,ko05132,map04145,map04962,map05132
Hectar predicted targeting categorymitochondrion
GOsGO:0000003,GO:0000070,GO:0000166,GO:0000235,GO:0000278,GO:0000280,GO:0000741,GO:0000742,GO:0000746,GO:0000747,GO:0000819,GO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005815,GO:0005816,GO:0005818,GO:0005819,GO:0005856,GO:0005868,GO:0005874,GO:0005875,GO:0005876,GO:0005881,GO:0005938,GO:0006810,GO:0006928,GO:0006996,GO:0006997,GO:0007017,GO:0007018,GO:0007049,GO:0007059,GO:0007080,GO:0007097,GO:0007127,GO:0007129,GO:0008144,GO:0008150,GO:0008569,GO:0008608,GO:0009987,GO:0010970,GO:0015630,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019953,GO:0022402,GO:0022414,GO:0030286,GO:0030473,GO:0030554,GO:0030705,GO:0030863,GO:0030981,GO:0030989,GO:0031134,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0035639,GO:0035974,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0044703,GO:0044764,GO:0045132,GO:0045143,GO:0045503,GO:0045505,GO:0046907,GO:0048284,GO:0048285,GO:0050000,GO:0051179,GO:0051234,GO:0051276,GO:0051303,GO:0051310,GO:0051315,GO:0051321,GO:0051640,GO:0051641,GO:0051647,GO:0051649,GO:0051656,GO:0051704,GO:0051959,GO:0061982,GO:0070192,GO:0071840,GO:0071944,GO:0072384,GO:0072687,GO:0097159,GO:0097367,GO:0098813,GO:0099080,GO:0099081,GO:0099111,GO:0099512,GO:0099513,GO:0099568,GO:0140013,GO:0140014,GO:1901265,GO:1901363,GO:1902494,GO:1903046,GO:1903047,GO:1990574,GO:1990758,GO:1990939
EggNOG free text desc.dynein light chain binding
EggNOG OGsCOG5245@1,KOG3595@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147,ko04812
Exons2
Model size366
Cds size366
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815657.550695-CDS-L-elsbetiae_contig15970:495..6511622815657.550695-CDS-L-elsbetiae_contig15970:495..651Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15970 496..651 +
1691683019.143539-CDS-L-elsbetiae_contig15970:495..6511691683019.143539-CDS-L-elsbetiae_contig15970:495..651Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15970 496..651 +
1622815657.5620766-CDS-L-elsbetiae_contig15970:1087..12971622815657.5620766-CDS-L-elsbetiae_contig15970:1087..1297Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15970 1088..1297 +
1691683019.156506-CDS-L-elsbetiae_contig15970:1087..12971691683019.156506-CDS-L-elsbetiae_contig15970:1087..1297Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15970 1088..1297 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15970.4117.1prot_L-elsbetiae_contig15970.4117.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15970 496..1297 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15970.4117.1

>prot_L-elsbetiae_contig15970.4117.1 ID=prot_L-elsbetiae_contig15970.4117.1|Name=mRNA_L-elsbetiae_contig15970.4117.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=122bp
FLLSGRTLARSFRVRIRASIAQFQQELIGHVREAVSAIQDKFRHRYEARL
RRALASLRDIPPVAGKILWARQMERQLRLLSMRLSDVLGEGWENHVDGRP
LKAVCDELLRNLDTKRWECVG*
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mRNA from alignment at L-elsbetiae_contig15970:496..1297+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15970.4117.1 ID=mRNA_L-elsbetiae_contig15970.4117.1|Name=mRNA_L-elsbetiae_contig15970.4117.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=802bp|location=Sequence derived from alignment at L-elsbetiae_contig15970:496..1297+ (Laminarionema elsbetiae ELsaHSoW15)
TTCTTGTTGTCCGGCCGCACTCTCGCACGCTCGTTCCGCGTTAGGATCCG
TGCGTCGATCGCTCAGTTCCAGCAGGAGCTGATCGGGCACGTGAGAGAAG
CCGTCTCCGCCATCCAAGACAAATTCAGGCACCGATACGAGGCAAGGCTT
CGGAGGGTATTTCTCATGGTGTGCTCGGCGAAAGTTGCATTTGTATTCAG
CTGTGCTTCTTGCGCGGCCTTCCTGCGTGACACCGCAGAAGAGATTTCCC
GCGGGCATGGGTACCATGTGTTTCGTGGAAGCTGTGCGAGCGAGAGAGTC
GTCTGCGTGGCATGCCGGCTTCGGGTTCACCCGATCTCTATACCGCTTCT
TTACCCTCTTCGAAATCAGCCCGTCGCTGTATCCACGACCAGTGTATCCA
TTCGCTCGCGCCTTTGGTCACCACTTTCCACTTCTGTTTACAAGTGCACC
CCATCGTTCCTATGTATGCCATGTTCAGGTTTCCGAGGCGATGGCGCTGG
CATCGCGCCTTTGTTCACGGCTTTCCACTTCTGAAATTATACGAGTACCC
CATCGTTCCTGTGTTTGCCATGTTCAGGTTTCCGAGGCGAAGGCACTGGC
ATCCTTACGGGACATTCCTCCCGTCGCCGGCAAGATCCTGTGGGCGAGGC
AGATGGAGCGGCAGCTGCGGCTGCTTTCAATGCGGCTGTCCGACGTGCTG
GGAGAAGGGTGGGAGAACCACGTCGACGGGCGGCCGTTGAAGGCCGTCTG
CGACGAGCTGCTCAGGAACCTGGACACCAAGAGGTGGGAGTGTGTGGGAT
AG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15970:496..1297+

>mRNA_L-elsbetiae_contig15970.4117.1 ID=mRNA_L-elsbetiae_contig15970.4117.1|Name=mRNA_L-elsbetiae_contig15970.4117.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=732bp|location=Sequence derived from alignment at L-elsbetiae_contig15970:496..1297+ (Laminarionema elsbetiae ELsaHSoW15)
TTCTTGTTGTCCGGCCGCACTCTCGCACGCTCGTTCCGCGTTAGGATCCG
TGCGTCGATCGCTCAGTTCCAGCAGGAGCTGATCGGGCACGTGAGAGAAG
CCGTCTCCGCCATCCAAGACAAATTCAGGCACCGATACGAGGCAAGGCTT
CGGAGGTTCTTGTTGTCCGGCCGCACTCTCGCACGCTCGTTCCGCGTTAG
GATCCGTGCGTCGATCGCTCAGTTCCAGCAGGAGCTGATCGGGCACGTGA
GAGAAGCCGTCTCCGCCATCCAAGACAAATTCAGGCACCGATACGAGGCA
AGGCTTCGGAGGGCACTGGCATCCTTACGGGACATTCCTCCCGTCGCCGG
CAAGATCCTGTGGGCGAGGCAGATGGAGCGGCAGCTGCGGCTGCTTTCAA
TGCGGCTGTCCGACGTGCTGGGAGAAGGGTGGGAGAACCACGTCGACGGG
CGGCCGTTGAAGGCCGTCTGCGACGAGCTGCTCAGGAACCTGGACACCAA
GAGGTGGGAGTGTGTGGGATAGGCACTGGCATCCTTACGGGACATTCCTC
CCGTCGCCGGCAAGATCCTGTGGGCGAGGCAGATGGAGCGGCAGCTGCGG
CTGCTTTCAATGCGGCTGTCCGACGTGCTGGGAGAAGGGTGGGAGAACCA
CGTCGACGGGCGGCCGTTGAAGGCCGTCTGCGACGAGCTGCTCAGGAACC
TGGACACCAAGAGGTGGGAGTGTGTGGGATAG
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