prot_L-elsbetiae_contig1597.4115.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1597.4115.1
Unique Nameprot_L-elsbetiae_contig1597.4115.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length678
Homology
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BLAST of mRNA_L-elsbetiae_contig1597.4115.1 vs. uniprot
Match: A0A836CDS4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDS4_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.310e-5
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 0 
Query:  497 ARSSTPWEAALALLREMPAAGLEPNVFHFNAAVSACAAFGRWREAVGLLEEM 548
            A +S PW  ALALLRE+ AAGL P+    N+ ++ACAA GRW+EA+ LL+ M
Sbjct:   41 AGASAPWRRALALLRELEAAGLVPDRVVLNSVMAACAAAGRWQEALRLLKRM 92
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1597.4115.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CDS4_9STRA2.310e-555.77Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 491..674
e-value: 1.0E-42
score: 148.6
coord: 336..484
e-value: 3.2E-36
score: 127.3
coord: 262..335
e-value: 5.6E-10
score: 41.1
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 350..375
e-value: 8.3E-5
score: 22.6
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 382..429
e-value: 3.9E-11
score: 43.0
coord: 591..641
e-value: 4.6E-8
score: 33.1
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 273..305
e-value: 0.0026
score: 15.8
coord: 421..454
e-value: 4.8E-5
score: 21.3
coord: 595..623
e-value: 4.5E-5
score: 21.3
coord: 349..384
e-value: 6.3E-6
score: 24.0
coord: 559..592
e-value: 3.9E-4
score: 18.4
coord: 385..419
e-value: 3.3E-7
score: 28.1
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 269..317
e-value: 0.0038
score: 17.3
coord: 509..570
e-value: 8.3E-6
score: 25.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 630..664
score: 8.802
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 347..377
score: 9.525
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 418..452
score: 11.005
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 485..520
score: 6.719
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 592..622
score: 9.734
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 521..551
score: 8.55
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 305..341
score: 6.621
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 557..591
score: 10.643
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 383..417
score: 11.97
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 270..304
score: 8.451
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 269..331
coord: 344..468
coord: 491..663

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1597contigL-elsbetiae_contig1597:14770..17011 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1597.4115.1mRNA_L-elsbetiae_contig1597.4115.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1597 14491..19630 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1597.4115.1 ID=prot_L-elsbetiae_contig1597.4115.1|Name=mRNA_L-elsbetiae_contig1597.4115.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=678bp
MAFISTYSAGNLSLRATAPTARVVLRSERLALGVGCSGRSLPVASLAEHL
PRTTTARAVSATATPGVNTEAARPARQRDGIGVQRRHHHAPRSPATTAGR
NAAPAACRVTAAAAGVATDNSSRTPRQADPQRSSSFRQEAVTPNGGRRTI
VARGERNAKYTSGRGACHHPSTGLREPADQRKATTTASRGTSSAEDGVLH
QYDRYEEIDFRRRVSKMPRGAWQAVLRDLEDAEAAAAQALAAKGGLNAVA
VAVGGRDINGGVGGGGTPVSLSMYTVCIRYMARERRGREAVRILGRVRAA
GLEPDLRCLNFAISACGRAGLWEQALRILRGTDVENGGASTGAVVRDVYC
WSSAVDACGRAGKWREAVSLVEEMQTGAGITPNAVTYNAAITACRKGKQW
KRAVALLDEMPKRGIAPNVSSFSAAISALGDAGQSKDAVALFREMGRVGV
KPDVMCFTAVLSACAGGNRPASQRGSGAGGVGESALRGGDAVVSGTARSS
TPWEAALALLREMPAAGLEPNVFHFNAAVSACAAFGRWREAVGLLEEMEG
LADVLPDVVTFSAAITACGNGLKFEHAVALLRRMPEKGVRPNNFAYNAAI
SACAKCGRYESASALLSEMWERKEIGVCPDAFSYSSAITACRNGNNIERA
SELKKEMATRGIKGGGSLMVSFLSEIP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat