mRNA_L-elsbetiae_contig1596.4108.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1596.4108.1
Unique NamemRNA_L-elsbetiae_contig1596.4108.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1596.4108.1 vs. uniprot
Match: A0A6H5JA15_9PHAE (BEACH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA15_9PHAE)

HSP 1 Score: 291 bits (744), Expect = 3.390e-91
Identity = 132/142 (92.96%), Postives = 137/142 (96.48%), Query Frame = 1
Query:    1 DGRFDKADRLFQSLPDAYRSCTHNPGDVKEAIPELYYLPELFVNATGFDLGCPQTTGKPLGDVQLPPWARGDPWEFVRRHREALESEHVSLRLHRWIDLVFGCRQRPPALNRGQRGAVESCNVFFHLTYPGAVDLPRLREQD 426
            DGRFDKADRLFQSLPDAYRSCTHNPGDVKEAIPELYYLPELFVNATGFDLGC Q TGKP+GDV+LP WA GDPWEFVRRHREALESEHVSLRLHRWIDLVFGCRQ PPAL+RGQRGAV+SCNVFFHLTYPG+VDLPRLREQD
Sbjct:    2 DGRFDKADRLFQSLPDAYRSCTHNPGDVKEAIPELYYLPELFVNATGFDLGCTQATGKPVGDVELPRWAHGDPWEFVRRHREALESEHVSLRLHRWIDLVFGCRQLPPALDRGQRGAVDSCNVFFHLTYPGSVDLPRLREQD 143          
BLAST of mRNA_L-elsbetiae_contig1596.4108.1 vs. uniprot
Match: D8LL16_ECTSI (Similar to neurobeachin like 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL16_ECTSI)

HSP 1 Score: 288 bits (736), Expect = 2.040e-87
Identity = 132/142 (92.96%), Postives = 136/142 (95.77%), Query Frame = 1
Query:    1 DGRFDKADRLFQSLPDAYRSCTHNPGDVKEAIPELYYLPELFVNATGFDLGCPQTTGKPLGDVQLPPWARGDPWEFVRRHREALESEHVSLRLHRWIDLVFGCRQRPPALNRGQRGAVESCNVFFHLTYPGAVDLPRLREQD 426
            DGRFDKADRLFQSLPDAYRSCTHNPGDVKEAIPELYYLPELFVNATGFDLGC Q TGKP+GDV+LP WA GDPWEFVRRHREALESEHVSLRLHRWIDLVFG RQ PPAL+RGQRGAV+SCNVFFHLTYPGAVDLPRLREQD
Sbjct: 3620 DGRFDKADRLFQSLPDAYRSCTHNPGDVKEAIPELYYLPELFVNATGFDLGCTQATGKPVGDVELPRWAHGDPWEFVRRHREALESEHVSLRLHRWIDLVFGYRQLPPALDRGQRGAVDSCNVFFHLTYPGAVDLPRLREQD 3761          
BLAST of mRNA_L-elsbetiae_contig1596.4108.1 vs. uniprot
Match: A0A482SSK4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SSK4_9ARCH)

HSP 1 Score: 181 bits (459), Expect = 7.300e-51
Identity = 85/142 (59.86%), Postives = 105/142 (73.94%), Query Frame = 1
Query:    1 DGRFDKADRLFQSLPDAYRSCTHNPGDVKEAIPELYYLPELFVNATGFDLGCPQTTGKPLGDVQLPPWARGDPWEFVRRHREALESEHVSLRLHRWIDLVFGCRQRPPALNRGQRGAVESCNVFFHLTYPGAVDLPRLREQD 426
            DGR D+ADRL  ++  A+R CT NP DVKE IPE++Y PE+FVN    D G  Q   K + D+ LPPWA+ DP EFVR+HR+ALESE+VS  LH WIDLVFGC+QRPP +  G + AV++CNVFFHLTY  AVDL +LRE +
Sbjct:  440 DGRIDRADRLLDAVEAAWRGCTSNPSDVKELIPEMFYNPEIFVNLNKVDFGKTQGHRK-ISDIILPPWAK-DPHEFVRKHRDALESEYVSKHLHHWIDLVFGCKQRPPHIPGGSQAAVDACNVFFHLTYENAVDLDKLRESN 579          
BLAST of mRNA_L-elsbetiae_contig1596.4108.1 vs. uniprot
Match: A0A7S1U4R0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U4R0_9STRA)

HSP 1 Score: 176 bits (445), Expect = 9.170e-49
Identity = 86/142 (60.56%), Postives = 103/142 (72.54%), Query Frame = 1
Query:    1 DGRFDKADRLFQSLPDAYRSCTHNPGDVKEAIPELYYLPELFVNATGFDLGCPQTTGKPLGDVQLPPWARGDPWEFVRRHREALESEHVSLRLHRWIDLVFGCRQRPPALNRGQRGAVESCNVFFHLTYPGAVDLPRLREQD 426
            DG+FDK DRLF+S+ + +   THN GDVKE +PEL+YLPE+F NA G D G  Q  GKP+GDV+LPPWA   P EFVR HR+ALESEHVS  LH WIDL+FG +QR  A       AV++CNV+FHLTY GAVDL  L+  D
Sbjct:  331 DGKFDKPDRLFRSMQETWYGVTHNAGDVKELVPELFYLPEIFRNAGGVDFGTRQN-GKPIGDVRLPPWA-ATPEEFVRIHRQALESEHVSANLHHWIDLIFGHKQRGAA-------AVDACNVYFHLTYEGAVDLDSLKRDD 463          
BLAST of mRNA_L-elsbetiae_contig1596.4108.1 vs. uniprot
Match: A0A7S0N1U8_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0N1U8_9CRYP)

HSP 1 Score: 162 bits (409), Expect = 7.090e-47
Identity = 83/140 (59.29%), Postives = 95/140 (67.86%), Query Frame = 1
Query:    1 DGRFDKADRLFQSLPDAYRSCTHNPGDVKEAIPELYYLPELFVNATGFDLGCPQTTGKPLGDVQLPPWARGDPWEFVRRHREALESEHVSLRLHRWIDLVFGCRQRPPALNRGQRGAVESCNVFFHLTYPGAVDLPRLRE 420
            DG FD  DRLF S+ D YR+CT    DVKE IPE Y LP+  VNA G DLG  Q+ G P GDVQLPPWA+G   EF+R HR ALESEHVS RLH WIDLVFG RQR PA       A E+ NVF+ LTY  AVD+  +++
Sbjct:  123 DGHFDCPDRLFLSIADTYRNCTTAMNDVKELIPEFYCLPDFLVNANGCDLGVTQSRG-PAGDVQLPPWAKGSVQEFIRLHRLALESEHVSSRLHLWIDLVFGYRQRGPA-------AEEATNVFYFLTYEDAVDIDAIQD 254          
BLAST of mRNA_L-elsbetiae_contig1596.4108.1 vs. uniprot
Match: A0A1V9YFS3_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YFS3_9STRA)

HSP 1 Score: 169 bits (427), Expect = 8.010e-46
Identity = 82/141 (58.16%), Postives = 97/141 (68.79%), Query Frame = 1
Query:    4 GRFDKADRLFQSLPDAYRSCTHNPGDVKEAIPELYYLPELFVNATGFDLGCPQTTGKPLGDVQLPPWARGDPWEFVRRHREALESEHVSLRLHRWIDLVFGCRQRPPALNRGQRGAVESCNVFFHLTYPGAVDLPRLREQD 426
            G+ D ADRLF S+  AYRSCT NP DV+E IPE Y LPE  +N  G  LG  Q  G  + DV LPPWA+G   EF+R HR ALES++VS  LH WIDLVFG +QRPP    G   AV++CNV+FHLTY GAVDL +L+  D
Sbjct: 2507 GKLDHADRLFHSVEAAYRSCTSNPSDVRELIPEFYCLPEFLLNTNGIALGVKQN-GDVVDDVVLPPWAKGSAHEFIRLHRLALESDYVSAHLHHWIDLVFGFKQRPPLFG-GTAHAVDACNVYFHLTYDGAVDLDKLQTTD 2645          
BLAST of mRNA_L-elsbetiae_contig1596.4108.1 vs. uniprot
Match: A0A485LMS4_9STRA (Aste57867_23059 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LMS4_9STRA)

HSP 1 Score: 166 bits (420), Expect = 7.020e-45
Identity = 79/141 (56.03%), Postives = 97/141 (68.79%), Query Frame = 1
Query:    4 GRFDKADRLFQSLPDAYRSCTHNPGDVKEAIPELYYLPELFVNATGFDLGCPQTTGKPLGDVQLPPWARGDPWEFVRRHREALESEHVSLRLHRWIDLVFGCRQRPPALNRGQRGAVESCNVFFHLTYPGAVDLPRLREQD 426
            G+ D ADRLF S+  AY+SCT NP DV+E IPE +YLP+   N++   LG  Q  G  +  V LPPWA+  P EF+R HR ALESE+VSL LH WIDL+FG +QRPP    G   AV +CNV+FHLTY GAVDL +L+  D
Sbjct: 2574 GKMDHADRLFHSIDAAYKSCTSNPSDVRELIPEFFYLPDFLTNSSTEPLGTKQN-GDVVHHVHLPPWAKNSPEEFIRLHRLALESEYVSLNLHHWIDLIFGFKQRPPLFG-GTSHAVSACNVYFHLTYDGAVDLDKLKRTD 2712          
BLAST of mRNA_L-elsbetiae_contig1596.4108.1 vs. uniprot
Match: A0A6G0X1N4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X1N4_9STRA)

HSP 1 Score: 166 bits (419), Expect = 9.560e-45
Identity = 80/141 (56.74%), Postives = 96/141 (68.09%), Query Frame = 1
Query:    4 GRFDKADRLFQSLPDAYRSCTHNPGDVKEAIPELYYLPELFVNATGFDLGCPQTTGKPLGDVQLPPWARGDPWEFVRRHREALESEHVSLRLHRWIDLVFGCRQRPPALNRGQRGAVESCNVFFHLTYPGAVDLPRLREQD 426
            G+ D ADRLF S+  AY+SCT NP DV+E IPE +YLP+   N+    LG  Q  G  +  V+LPPWA+  P EF+R HR ALESE+VSL LH WIDL+FG +QRPP    G   AV SCNV+FHLTY GAVDL  L+  D
Sbjct: 2465 GKIDHADRLFHSIDAAYKSCTTNPSDVRELIPEFFYLPDFLTNSHNDPLGVKQN-GDVVHHVELPPWAKNSPEEFIRLHRLALESEYVSLNLHHWIDLIFGYKQRPPLFG-GTSHAVTSCNVYFHLTYAGAVDLESLKRTD 2603          
BLAST of mRNA_L-elsbetiae_contig1596.4108.1 vs. uniprot
Match: A0A482SUG5_9ARCH (DUF4704 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SUG5_9ARCH)

HSP 1 Score: 166 bits (419), Expect = 9.620e-45
Identity = 81/142 (57.04%), Postives = 95/142 (66.90%), Query Frame = 1
Query:    1 DGRFDKADRLFQSLPDAYRSCTHNPGDVKEAIPELYYLPELFVNATGFDLGCPQTTGKPLGDVQLPPWARGDPWEFVRRHREALESEHVSLRLHRWIDLVFGCRQRPPALNRGQRGAVESCNVFFHLTYPGAVDLPRLREQD 426
            DG+FD+ DRLF S+   +  CT N  DVKE IPE +Y PE   N     LG  Q  G  L DV LP WAR DP +FVR HREALESEHVS +LH WIDLVFGC+QRPP L  G    V++CNVF+HL+Y GAVDL  ++  D
Sbjct: 2991 DGKFDRPDRLFHSIASTFSGCTTNTQDVKELIPEFFYNPEFLSNLNQLQLGTRQD-GDALDDVILPKWAR-DPVDFVRIHREALESEHVSSQLHHWIDLVFGCKQRPPFLPNGSEKTVQACNVFYHLSYLGAVDLDDIKSSD 3130          
BLAST of mRNA_L-elsbetiae_contig1596.4108.1 vs. uniprot
Match: A0A8K0MIN0_9ROSA (Uncharacterized protein n=1 Tax=Rhamnella rubrinervis TaxID=2594499 RepID=A0A8K0MIN0_9ROSA)

HSP 1 Score: 165 bits (418), Expect = 1.310e-44
Identity = 78/140 (55.71%), Postives = 100/140 (71.43%), Query Frame = 1
Query:    4 GRFDKADRLFQSLPDAYRSCTHNPGDVKEAIPELYYLPELFVNATGFDLGCPQTTGKPLGDVQLPPWARGDPWEFVRRHREALESEHVSLRLHRWIDLVFGCRQRPPALNRGQRGAVESCNVFFHLTYPGAVDLPRLREQ 423
            G+FD ADRLFQS+   YR+C  N  DVKE IPE +YLPEL VN+  + +G  Q  G+P+GDV LPPWA+G P EF+ R+REALESE+VS  LH WIDLVFG +QR        + AVE+ N+F++LTY GAVDL  + ++
Sbjct: 2730 GKFDHADRLFQSVESTYRNCLSNTSDVKELIPEFFYLPELLVNSNSYHIGVKQD-GEPIGDVCLPPWAKGSPEEFINRNREALESEYVSSNLHHWIDLVFGYKQRG-------KPAVEAANIFYYLTYEGAVDLDTMEDE 2861          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1596.4108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JA15_9PHAE3.390e-9192.96BEACH domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LL16_ECTSI2.040e-8792.96Similar to neurobeachin like 1 n=1 Tax=Ectocarpus ... [more]
A0A482SSK4_9ARCH7.300e-5159.86Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S1U4R0_9STRA9.170e-4960.56Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S0N1U8_9CRYP7.090e-4759.29Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A1V9YFS3_9STRA8.010e-4658.16Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A485LMS4_9STRA7.020e-4556.03Aste57867_23059 protein n=1 Tax=Aphanomyces stella... [more]
A0A6G0X1N4_9STRA9.560e-4556.74Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A482SUG5_9ARCH9.620e-4557.04DUF4704 domain-containing protein n=1 Tax=archaeon... [more]
A0A8K0MIN0_9ROSA1.310e-4455.71Uncharacterized protein n=1 Tax=Rhamnella rubriner... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1596contigL-elsbetiae_contig1596:370..795 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score290.8
Seed ortholog evalue3.4e-76
Seed eggNOG ortholog2880.D8LL16
Hectar predicted targeting categoryother localisation
EggNOG free text desc.platelet formation
EggNOG OGsKOG1787@1,KOG1787@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size426
Cds size426
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815656.5107305-CDS-L-elsbetiae_contig1596:369..7951622815656.5107305-CDS-L-elsbetiae_contig1596:369..795Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1596 370..795 -
1691683018.5693169-CDS-L-elsbetiae_contig1596:369..7951691683018.5693169-CDS-L-elsbetiae_contig1596:369..795Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1596 370..795 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1596.4108.1prot_L-elsbetiae_contig1596.4108.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1596 370..795 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1596.4108.1

>prot_L-elsbetiae_contig1596.4108.1 ID=prot_L-elsbetiae_contig1596.4108.1|Name=mRNA_L-elsbetiae_contig1596.4108.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=142bp
DGRFDKADRLFQSLPDAYRSCTHNPGDVKEAIPELYYLPELFVNATGFDL
GCPQTTGKPLGDVQLPPWARGDPWEFVRRHREALESEHVSLRLHRWIDLV
FGCRQRPPALNRGQRGAVESCNVFFHLTYPGAVDLPRLREQD
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mRNA from alignment at L-elsbetiae_contig1596:370..795-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1596.4108.1 ID=mRNA_L-elsbetiae_contig1596.4108.1|Name=mRNA_L-elsbetiae_contig1596.4108.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=426bp|location=Sequence derived from alignment at L-elsbetiae_contig1596:370..795- (Laminarionema elsbetiae ELsaHSoW15)
GACGGGCGCTTTGACAAGGCTGATCGCCTCTTCCAGTCTCTCCCCGACGC CTACCGATCCTGCACGCACAACCCCGGGGACGTCAAGGAGGCCATCCCCG AGCTGTACTACCTGCCCGAGCTTTTCGTCAACGCCACCGGTTTTGACCTC GGGTGTCCCCAGACCACCGGCAAGCCGCTCGGCGACGTCCAACTGCCACC GTGGGCTCGCGGAGACCCGTGGGAGTTCGTCAGGCGCCACCGGGAGGCCT TGGAGAGCGAGCACGTCAGTTTGCGGTTGCACCGGTGGATCGACCTCGTA TTCGGCTGTCGGCAGCGGCCACCGGCGTTGAACAGGGGACAGCGCGGCGC GGTAGAGTCGTGCAACGTCTTCTTCCATCTCACGTACCCGGGGGCGGTGG ACCTACCGCGCTTGCGAGAACAGGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1596:370..795-

>mRNA_L-elsbetiae_contig1596.4108.1 ID=mRNA_L-elsbetiae_contig1596.4108.1|Name=mRNA_L-elsbetiae_contig1596.4108.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=852bp|location=Sequence derived from alignment at L-elsbetiae_contig1596:370..795- (Laminarionema elsbetiae ELsaHSoW15)
GACGGGCGCTTTGACAAGGCTGATCGCCTCTTCCAGTCTCTCCCCGACGC
CTACCGATCCTGCACGCACAACCCCGGGGACGTCAAGGAGGCCATCCCCG
AGCTGTACTACCTGCCCGAGCTTTTCGTCAACGCCACCGGTTTTGACCTC
GGGTGTCCCCAGACCACCGGCAAGCCGCTCGGCGACGTCCAACTGCCACC
GTGGGCTCGCGGAGACCCGTGGGAGTTCGTCAGGCGCCACCGGGAGGCCT
TGGAGAGCGAGCACGTCAGTTTGCGGTTGCACCGGTGGATCGACCTCGTA
TTCGGCTGTCGGCAGCGGCCACCGGCGTTGAACAGGGGACAGCGCGGCGC
GGTAGAGTCGTGCAACGTCTTCTTCCATCTCACGTACCCGGGGGCGGTGG
ACCTACCGCGCTTGCGAGAACAGGACGACGGGCGCTTTGACAAGGCTGAT
CGCCTCTTCCAGTCTCTCCCCGACGCCTACCGATCCTGCACGCACAACCC
CGGGGACGTCAAGGAGGCCATCCCCGAGCTGTACTACCTGCCCGAGCTTT
TCGTCAACGCCACCGGTTTTGACCTCGGGTGTCCCCAGACCACCGGCAAG
CCGCTCGGCGACGTCCAACTGCCACCGTGGGCTCGCGGAGACCCGTGGGA
GTTCGTCAGGCGCCACCGGGAGGCCTTGGAGAGCGAGCACGTCAGTTTGC
GGTTGCACCGGTGGATCGACCTCGTATTCGGCTGTCGGCAGCGGCCACCG
GCGTTGAACAGGGGACAGCGCGGCGCGGTAGAGTCGTGCAACGTCTTCTT
CCATCTCACGTACCCGGGGGCGGTGGACCTACCGCGCTTGCGAGAACAGG
AC
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