mRNA_L-elsbetiae_contig1593.4097.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1593.4097.1
Unique NamemRNA_L-elsbetiae_contig1593.4097.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1593.4097.1 vs. uniprot
Match: A0A6H5JD92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD92_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 5.500e-14
Identity = 34/73 (46.58%), Postives = 45/73 (61.64%), Query Frame = 1 
Query:  121 PVSGATETWACTVGRPSACYDQISESDYKSMVISQQR-MQCTSACLTDGGFWCQAMGIDGCRFCSLDCDEFCS 336
            P SG T T  CT G    CYDQ+ E   K +++ + R + C  +CL DGG WC A+G+ GCRFC+  CD FC+
Sbjct: 1266 PTSGVTFT-ECTPGDSDTCYDQL-EPSMKGLLVERSRGLTCEESCLIDGGLWCDALGLSGCRFCATSCDNFCT 1336
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1593.4097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JD92_9PHAE5.500e-1446.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1593contigL-elsbetiae_contig1593:4571..6902 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size339
Cds size336
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1593.4097.1prot_L-elsbetiae_contig1593.4097.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1593 4572..6902 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815655.5227044-CDS-L-elsbetiae_contig1593:4571..46111622815655.5227044-CDS-L-elsbetiae_contig1593:4571..4611Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1593 4572..4611 -
1691683017.9458022-CDS-L-elsbetiae_contig1593:4571..46111691683017.9458022-CDS-L-elsbetiae_contig1593:4571..4611Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1593 4572..4611 -
1622815655.5341563-CDS-L-elsbetiae_contig1593:5921..60311622815655.5341563-CDS-L-elsbetiae_contig1593:5921..6031Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1593 5922..6031 -
1691683017.9550803-CDS-L-elsbetiae_contig1593:5921..60311691683017.9550803-CDS-L-elsbetiae_contig1593:5921..6031Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1593 5922..6031 -
1622815655.5447628-CDS-L-elsbetiae_contig1593:6716..69021622815655.5447628-CDS-L-elsbetiae_contig1593:6716..6902Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1593 6717..6902 -
1691683017.9640713-CDS-L-elsbetiae_contig1593:6716..69021691683017.9640713-CDS-L-elsbetiae_contig1593:6716..6902Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1593 6717..6902 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1593.4097.1

>prot_L-elsbetiae_contig1593.4097.1 ID=prot_L-elsbetiae_contig1593.4097.1|Name=mRNA_L-elsbetiae_contig1593.4097.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
ECDDHGALWCNIFGKPNCRMCSHDCEAYCLGETDCACHPCPVSGATETWA
CTVGRPSACYDQISESDYKSMVISQQRMQCTSACLTDGGFWCQAMGIDGC
RFCSLDCDEFCS
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mRNA from alignment at L-elsbetiae_contig1593:4571..6902-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1593.4097.1 ID=mRNA_L-elsbetiae_contig1593.4097.1|Name=mRNA_L-elsbetiae_contig1593.4097.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2332bp|location=Sequence derived from alignment at L-elsbetiae_contig1593:4571..6902- (Laminarionema elsbetiae ELsaHSoW15)
GAGTGCGACGACCATGGTGCCCTGTGGTGCAACATATTTGGCAAACCGAA
CTGCCGCATGTGCAGTCACGACTGCGAAGCTTACTGCCTGGGGGAGACGG
ACTGCGCTTGCCACCCTTGCCCCGTATCAGGCGCCACGGAGACGTGGGCG
TGCACAGTAGGCAGGCCATCGGCTTGCTATGACCAGGTTCGTGTTTGGTG
GCCAGTATCTTAAAAGGGCGTTGAAGTGGTTTTGGCATAAATTAGACCAT
GAAGTGGCAGCATTCACCGCGGTGCCAAACACTTGCTGTTTATGAATACA
TAGCAGTGCCGATTTACATTCGGCGCCATCGAGCCCCCTGCGGCGCTGGT
GGTTCCCCGACAAGATGACGCACAGCACGGGATGCCGACGCGAGCACACT
CGAACAAGCGATACATGTATGCACGCAGTCAACGAGAACTGCCATCTTGT
TTGAGCCTTGGCCTTTCTCGCCTCGTCCTTATCGCCCCGGGGTGGCCAAG
GCAGGAGCGCGGCCTTAGAAACGAGGGACGTGATACGTGGGCATCGATAG
AAAACGATCGCACCAAGCTGAGATCTGTGCTGCACTTTGCACTGAAATAT
TAAACTGAACCCATTGCTTCGACTGTACAGGATGCGTGCCCCAACAGTAG
TAGTCGCGACTGAGCGCTGATACGCACGTGACTTCACACCTAGCCCAACA
CGAACATACACTTACATACTAATACGTGTGACGCTTGTCCTGACCTCGGT
TTCTATCTTCCGTTGCGCTTCAATGGCGCTTCGTAACCTTTCTGCCCTAC
CTCTTTCTGACTACATACGTCCGCCCTTATCGGTGCGTTTCCTGGCTTCT
TTCTTGGGCTCCCTACCATAGATCTCCGAGAGCGACTACAAGTCCATGGT
GATCAGTCAGCAGAGAATGCAGTGCACGTCGGCGTGCCTCACGGACGGAG
GTTTCTGGTGTCAAGCCATGGGCATTGACGGGTGAGCCGCCATGCGGGCT
TCGCACCTGCGCACCAGAAAATTAAGAAGCATCATCAAAGCACCTCCACC
ATCACCGTAGCATCATTGATGATCTACCGTAAACCCCTTTGAGCTATACC
CCCGACGAGTTTACCCCCTCCCCCTCCTATTATCGGCTTCGCGACCACGA
AAACTTTGAGTTAGCCCCAGGGCGAACTATTATTAATATTTATTTATTTT
TGGCCCCTCTACCTCTGAGTTACCCCCGGGGCGTTCTTTTTTCGGCTTTG
TTTTGGGGTTAACCCCGGGGCGTGACGGCATTTGTTCCGGCAACTTGTTT
TTGCGTGTTACCACCAAGTGTTACCCAGCAGCTTGGGTATGATTGTTGCT
GGTGATATTACCTGTTAGCGGTTCGTTTGCCATCCATCGGACAATCGCAC
ATTCAGAGGTCTCTCGTATACATTTATTTTTCATGTAATTGTACCTCTTC
CCATCATCCCATCGGTACTGCTACAGATAACGTATCTGCGCAACAACTAC
GGCGGCAGATTATGTTTGGTACCAAAATACCGCAGGACCCACAAAACATG
ACGTGAACGCCTTACTCTCGTCCATTGCACCTGAAAAGCAAGGCAATACC
TCGTGATAGATTACTCTGTACCCGTGAACAGAAAACACAAGAAAGATCGC
ATCGCGGCTCTTAAAAAACGCATGACCGGAGCACAAGGCTGGCGCCACAA
TATTCAGCGCCGAAAAACACAGAACAAACCACGAAGAAAGAGACGCACGC
TCGAAACGAGGCTGTACAGGCCCGACATTGATCCGCGGGTGTGTGTGTAT
GTGTGAAAAAAGAGAGTTCGCCCCCGTTTTGTTTTTCGCCCCGGGGTGAT
TCTGTTTTGTGAAAAAGATGGCCCCCCTCCCGGTGAGATATCCCCGGGGC
ATGATTTTGACCCAATTTCTTTTTTATCCCCCCCTGGTATAACTCAAAGG
GGTTTGCGGTATATGCCTGCTCCTTGGGTGGTAAACGAGCGTTTGCCCCG
TCTTGCTTTTTGGGTCGATTTATCTCAGTGTGCGCGCTAGCAACCTGAGC
CGGCTTTCGCCGTGACGTCAGCCAACCAATCGCACAATTGCCAAACCCAT
AAACACAGCACAAATAGTGTCCCCTGCGCGCTGCATGATGCCCTACAGTA
TTAACATGGACGTGCTCCCAGCCTTGCACGTTTATGGAGGCGGTCGTCAA
CACGTACCATATACTTGTAGGCTACGTAAGCCCGAGGCAAGTGCGTTAAT
TTTATGACAAAGTGTCCACCGTGATTGCTGCCGCGCAACAGATGCCGCTT
CTGCTCGTTGGACTGCGACGAGTTCTGCTCCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1593:4571..6902-

>mRNA_L-elsbetiae_contig1593.4097.1 ID=mRNA_L-elsbetiae_contig1593.4097.1|Name=mRNA_L-elsbetiae_contig1593.4097.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig1593:4571..6902- (Laminarionema elsbetiae ELsaHSoW15)
GAGTGCGACGACCATGGTGCCCTGTGGTGCAACATATTTGGCAAACCGAA
CTGCCGCATGTGCAGTCACGACTGCGAAGCTTACTGCCTGGGGGAGACGG
ACTGCGCTTGCCACCCTTGCCCCGTATCAGGCGCCACGGAGACGTGGGCG
TGCACAGTAGGCAGGCCATCGGCTTGCTATGACCAGGAGTGCGACGACCA
TGGTGCCCTGTGGTGCAACATATTTGGCAAACCGAACTGCCGCATGTGCA
GTCACGACTGCGAAGCTTACTGCCTGGGGGAGACGGACTGCGCTTGCCAC
CCTTGCCCCGTATCAGGCGCCACGGAGACGTGGGCGTGCACAGTAGGCAG
GCCATCGGCTTGCTATGACCAGATCTCCGAGAGCGACTACAAGTCCATGG
TGATCAGTCAGCAGAGAATGCAGTGCACGTCGGCGTGCCTCACGGACGGA
GGTTTCTGGTGTCAAGCCATGGGCATTGACGGATCTCCGAGAGCGACTAC
AAGTCCATGGTGATCAGTCAGCAGAGAATGCAGTGCACGTCGGCGTGCCT
CACGGACGGAGGTTTCTGGTGTCAAGCCATGGGCATTGACGGATGCCGCT
TCTGCTCGTTGGACTGCGACGAGTTCTGCTCCATGCCGCTTCTGCTCGTT
GGACTGCGACGAGTTCTGCTCC
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