mRNA_L-elsbetiae_contig1593.4099.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1593.4099.1
Unique NamemRNA_L-elsbetiae_contig1593.4099.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1593.4099.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1593contigL-elsbetiae_contig1593:11428..14771 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size661
Cds size417
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1593.4099.1prot_L-elsbetiae_contig1593.4099.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1593 13808..14771 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815655.4139218-UTR-L-elsbetiae_contig1593:11427..115031622815655.4139218-UTR-L-elsbetiae_contig1593:11427..11503Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1593 11428..11503 +
1691683017.8949444-UTR-L-elsbetiae_contig1593:11427..115031691683017.8949444-UTR-L-elsbetiae_contig1593:11427..11503Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1593 11428..11503 +
1622815655.427049-UTR-L-elsbetiae_contig1593:13640..138071622815655.427049-UTR-L-elsbetiae_contig1593:13640..13807Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1593 13641..13807 +
1691683017.9036944-UTR-L-elsbetiae_contig1593:13640..138071691683017.9036944-UTR-L-elsbetiae_contig1593:13640..13807Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1593 13641..13807 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815655.437051-CDS-L-elsbetiae_contig1593:13807..138181622815655.437051-CDS-L-elsbetiae_contig1593:13807..13818Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1593 13808..13818 +
1691683017.9184647-CDS-L-elsbetiae_contig1593:13807..138181691683017.9184647-CDS-L-elsbetiae_contig1593:13807..13818Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1593 13808..13818 +
1622815655.4484096-CDS-L-elsbetiae_contig1593:14365..147711622815655.4484096-CDS-L-elsbetiae_contig1593:14365..14771Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1593 14366..14771 +
1691683017.9279463-CDS-L-elsbetiae_contig1593:14365..147711691683017.9279463-CDS-L-elsbetiae_contig1593:14365..14771Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1593 14366..14771 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1593.4099.1

>prot_L-elsbetiae_contig1593.4099.1 ID=prot_L-elsbetiae_contig1593.4099.1|Name=mRNA_L-elsbetiae_contig1593.4099.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=139bp
MIHRPDTHVTPPSPWRLLELGVTVLMVLTALPAGGAFGLQTCVDPSVQPR
CQPRTVAGAVAAATAVAPTALVAGLGARDGAVARGINIHGEDTMAPAAVR
GAAATWLDGSDHARLGRAAGGGRGGGVVERASCSAEQRQ
back to top

mRNA from alignment at L-elsbetiae_contig1593:11428..14771+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1593.4099.1 ID=mRNA_L-elsbetiae_contig1593.4099.1|Name=mRNA_L-elsbetiae_contig1593.4099.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3344bp|location=Sequence derived from alignment at L-elsbetiae_contig1593:11428..14771+ (Laminarionema elsbetiae ELsaHSoW15)
CGTCTGCTTGTGCGTTTAAGTTGGCTGGTGCATACTTGGGTCGGAAAAGC
GTTGGCGACCGGAGAGGAAAAGGCAGGTGCGGATGCCTCGAGGGGATATT
TGCACACACAACGTCAGTTGTTGTAGTTTGCGCAAGTTCAAAATGTTGTT
CATGAAGCGCAACGGCTTGGCACAAGCAGAGGTTGCTTTCTCTACCTTTG
GATCAGGCTTAGCTCCCCGCCAGAGACATCTCCTGGTAGTTCGAGGACTC
TAGACTCGGGGTAGAGACAAAACTGATGTTTGTTTCATGTGTCTCTCGCG
CACAACGAGCTATAGCTTCGTACCTCCTCCGAAAAACATTTATATGTTCT
AACGGAGGGGGGGGGGGGGCGGGCGGCGGCGTGTCGCACGTACGTTCTCC
GCGCTTTTCCACACTGCGTTGACTGGTGCTTGCGGGCGGTCAGCANNNNN
NNNNNTTGTTTTTTTCTATGGCGGAGGTGAAAGGAGAGTTAGTGTGTGAG
TCCACCTCCCAAAAAATTTTGTGTTATTTACGGGGGGGGGGGGGGGGGGC
GGCGGCGGCGTGTCGCACTTTCTTTCTACGTGCATTTCCACGTTGCGTTG
ACTGGTGCTAGTCGACGGTAAGTATTGCGTTATATCTCGAATGGTGGTTA
TATCGTGCTACATATGTAGACTACATACAATAGTACATGATACGAACAAT
CGTGGTGACAAAAACGGCGGTTGACCAGATATCTAGCCAGAGATAGACAA
GAACCCCCCCCCCCCCCCCCCCCCGGGCACAAACTCGGGGCTTCACAAAA
CTGGTTGGTCGGGATCGGGGTTTTATGGTTGGGGGGGATCGGTTTCTNNN
NNNNNNNGACAAGATATTAGCAAATCGTGGGGAAAAAAACAGCGGGGGTA
CAACAAATATGCCCCAGTGGACGCTCACGCCCCCCCCCCCCCCCCCCCCC
CGGTGATACATTTGGGCGCTTGAAAACACTTCTGGCCGGGAGATGGTTTT
CTGTGGGGGGGTGGTATCTATTGTCCCCCGGTGATAAAGTGCAGGTCGTG
GGGGTGCCCATCAAAGGGGGGTGATCCTAAGGGCGGGGGTTGGTGATAAG
GGGCGTGATACATCACTGCCTACGTGACGGTTGATGTACCTCTGCAAGGG
GGGGGGTGTAACAAGGGAGGATGATCGCGGCGGCGTGTGATATCACTGCC
TGCGATGACTGCTGCCCTGCATTTACAGGGGGTGTGGCATCAAGGGGGGG
TATTATTACGCCGGCGAGCAAATGTTGCTGCAGTTCTGCAGGAGCTGCTT
CGGAATACAAGTGGGGCTGATAACAAGGGGACGTGTCTAATCGCGGTTCA
TGCATACTTCTTTCACATGAAACCCGGGCATACATGCACACCATCAACCC
CTCGTTGAAAATAAAAGTGCCACCAGCACCTAGTGTGGCACCAAGGAGAT
AAGATTCTAGACAGGCATGAAGGCTGAATTGAGACCCGTCCGCGTTCCCC
GCTGGATTTTCCGTCAATGCCAATCTCTTACCCCGGTGTGCGCTTTCGAG
CGAGTGCAAAATGCGTTATCAAAACAAGCAAGAGCCGTTTTCACGCAACA
AACTAGTCTCCGGCAGGGCTCCACGACGGCTGCCCCTGCCTACCTACCGG
TATCCAGCGAGGACAAAACCAAGCACCATGCCCCGTGGTTTATGCGGTGT
AACCTCAGGGGGGGTGTTATCTTCGGTCTTCAGTACCCTGGTGATAAAGA
ATGGGTCAATTATTCTGCGCTTAAAAAAAGTTATCACCGGGGTGATTTTC
TGTGTGGGGGGGGTGGTATCTTCGATGCCCGTGGTATATATGTGGGTCTA
CGGTAGTAGACTATGTATCGATCTGGTATAATTCTGCCGAAACTGTGGGC
TTTATCGTTCCAATTTTCGCGCACTCTTGATATTAGTATTGATACAATTC
ACCAGATATTAGATATGCTTGCTGCGCACCGTACAGCAGTGCCGTGGTTG
CTTGCATATGAGGATCCCGTGGGCCGTCGACCTTACACCAGAAAATATAC
GCAACACACACATCTACTGGTACCGTATGAACCGCGATTCACAGGTTTGC
TAAGGACCGATGTGCTGTTGTTGTACTTCGCACACATGTATGCACGTAGT
GTGAACCATAGATGCATCATCTGGCAACCGGCACTACTGCGTATGTGGGC
ACGCTTACAGCAGGTATCGCAGACCTGTCCTACTGCTGCAGGCAGGGTCT
GACTGGACTGGTAATCGGCTACGCCAGCGCTCGCAGGAGGAGTTGGTGGG
GTCCCGCTGAATCGCTTGGCTGGGCGTAACCACCCCCCGCCCCCCCCAGA
GATACTTTCCAGGGGTGGGGAGCTTGGCTCATGATACACAGGTGCGGAAG
CTGAGACATGAGGTACCTATGTATATAGATGGGAGATTTTGAAGCATGCA
CTGACTGCAGTTGCTGCTCCCTTTCCCTCTTCCCTCTGCTGGCAGATACA
ATCAGGATTATGCAAATCATATGGTTGTTGTTGGCACGGCATTTTGGTCT
CTCCAGGGCCCCCACAGGCAGTGGCGTTTTGTTTGGTCTCGTAGAGGCCA
GCATCGAAAATCCTACTGTGTACATCGAGTAGATATACCAGTTGTATAGA
CAGTAGTCACGGTATCTGCTGAAAGACCCGCAGAGAATGAGCATTCAGCT
TGTCTGTGGCTGATGAAGCCCGATTTGCCGATGCGGTAATGCCACGGCGG
CGTTGTTCCCCTTCCCGCCTCTACACTAGCATGTAGTTTCTGTTGTCCAC
AGCCATTTTCCTCCAGGTTTTGAAGCGATTTTACGTCCATGGCAACCCGT
CCATCTCACCGTCTCTGCTGTTGCGTTAAAAGCCTGCGTGTCTGCTGTGT
TGGTTTTTACGTTTTGCTGCAAATTATCTCTAAATCAGGCCGGACACGCA
TGTCACACCACCATCACCGTGGCGCCTGCTGGAGCTGGGTGTCACAGTGC
TCATGGTGCTGACGGCATTGCCGGCAGGGGGCGCTTTTGGCCTCCAGACT
TGCGTCGACCCTTCGGTCCAGCCCCGCTGTCAGCCAAGGACAGTAGCAGG
AGCAGTAGCAGCAGCAACAGCGGTAGCGCCAACGGCTCTGGTTGCCGGTC
TCGGCGCTCGCGACGGTGCTGTCGCGAGGGGCATCAATATACACGGGGAA
GATACGATGGCACCGGCGGCGGTCCGTGGTGCAGCGGCGACTTGGCTCGA
CGGATCCGACCACGCGCGTCTAGGAAGAGCAGCAGGAGGAGGAAGAGGAG
GAGGGGTAGTGGAACGTGCAAGCTGCTCGGCGGAACAACGGCAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1593:11428..14771+

>mRNA_L-elsbetiae_contig1593.4099.1 ID=mRNA_L-elsbetiae_contig1593.4099.1|Name=mRNA_L-elsbetiae_contig1593.4099.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=834bp|location=Sequence derived from alignment at L-elsbetiae_contig1593:11428..14771+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATACACAGATGATACACAGGCCGGACACGCATGTCACACCACCATCA
CCGTGGCGCCTGCTGGAGCTGGGTGTCACAGTGCTCATGGTGCTGACGGC
ATTGCCGGCAGGGGGCGCTTTTGGCCTCCAGACTTGCGTCGACCCTTCGG
TCCAGCCCCGCTGTCAGCCAAGGACAGTAGCAGGAGCAGTAGCAGCAGCA
ACAGCGGTAGCGCCAACGGCTCTGGTTGCCGGTCTCGGCGCTCGCGACGG
TGCTGTCGCGAGGGGCATCAATATACACGGGGAAGATACGATGGCACCGG
CGGCGGTCCGTGGTGCAGCGGCGACTTGGCTCGACGGATCCGACCACGCG
CGTCTAGGAAGAGCAGCAGGAGGAGGAAGAGGAGGAGGGGTAGTGGAACG
TGCAAGCTGCTCGGCGGAACAACGGCAGGCCGGACACGCATGTCACACCA
CCATCACCGTGGCGCCTGCTGGAGCTGGGTGTCACAGTGCTCATGGTGCT
GACGGCATTGCCGGCAGGGGGCGCTTTTGGCCTCCAGACTTGCGTCGACC
CTTCGGTCCAGCCCCGCTGTCAGCCAAGGACAGTAGCAGGAGCAGTAGCA
GCAGCAACAGCGGTAGCGCCAACGGCTCTGGTTGCCGGTCTCGGCGCTCG
CGACGGTGCTGTCGCGAGGGGCATCAATATACACGGGGAAGATACGATGG
CACCGGCGGCGGTCCGTGGTGCAGCGGCGACTTGGCTCGACGGATCCGAC
CACGCGCGTCTAGGAAGAGCAGCAGGAGGAGGAAGAGGAGGAGGGGTAGT
GGAACGTGCAAGCTGCTCGGCGGAACAACGGCAG
back to top