mRNA_L-elsbetiae_contig1593.4098.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1593.4098.1
Unique NamemRNA_L-elsbetiae_contig1593.4098.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1593.4098.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1593contigL-elsbetiae_contig1593:7683..8522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size260
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815655.3634846-CDS-L-elsbetiae_contig1593:7683..77821622815655.3634846-CDS-L-elsbetiae_contig1593:7683..7782Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1593 7684..7782 -
1691683017.878248-CDS-L-elsbetiae_contig1593:7683..77821691683017.878248-CDS-L-elsbetiae_contig1593:7683..7782Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1593 7684..7782 -
1622815655.377275-CDS-L-elsbetiae_contig1593:8363..85221622815655.377275-CDS-L-elsbetiae_contig1593:8363..8522Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1593 8364..8522 -
1691683017.88664-CDS-L-elsbetiae_contig1593:8363..85221691683017.88664-CDS-L-elsbetiae_contig1593:8363..8522Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1593 8364..8522 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1593.4098.1prot_L-elsbetiae_contig1593.4098.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1593 7684..8522 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1593.4098.1

>prot_L-elsbetiae_contig1593.4098.1 ID=prot_L-elsbetiae_contig1593.4098.1|Name=mRNA_L-elsbetiae_contig1593.4098.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=86bp
QDPGPSKLQVQVRYGDTVEDMLENVPNPADSPEWSSAPSSHQIFKGGREI
MIDVMFCFPANDRPAKGLGFRYESPSLQHRADVSPL
back to top

mRNA from alignment at L-elsbetiae_contig1593:7683..8522-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1593.4098.1 ID=mRNA_L-elsbetiae_contig1593.4098.1|Name=mRNA_L-elsbetiae_contig1593.4098.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=840bp|location=Sequence derived from alignment at L-elsbetiae_contig1593:7683..8522- (Laminarionema elsbetiae ELsaHSoW15)
CAGGACCCGGGACCTAGTAAACTGCAGGTGCAAGTGCGGTACGGCGACAC
GGTTGAGGACATGCTCGAGAACGTACCCAACCCCGCCGACTCCCCGGAAT
GGTCCTCAGCGCCGTCAAGCCATCAGATATTCAAAGGGGGGCGCGAGATC
ATGATCGATGTGAGTTGTGCGAGTGTCGTGCCGACGCCAGCGACAGCAGT
TCACTTTGCGAATTAATCCGCACGGGGTGTACGCTTGAGTTACGCGACAA
GAACAAGGCCGGTCTAGGTTTGTAGAACATGGCGTTGGGTATATCTAAAA
TCGAAATTGGAGGTAATACCACCATGAAACCAAAACGCATGAAACCAACT
CCAATGCATTAATAGCCCGTTATGAGGAACACAGATGCGAAAAGGGAGGA
AAAGTTGTCTGTAGGGGAGAAATCTGGCATGTATACCTTGATGATTAAGC
TTGTAAAAACGTATTCTAGGTCATCAACGCGAAGCCAGCTAGCCTCTTCC
GTTTTCAAATTCCAAGTGGCTTTTGAGGTGGCCGTGTTCACCGTGCTCCA
ATTGCCATGCGTCGATAGTGACGAAAACGTGTATAGCCCGAGCGTGCACT
CAAGAACAGGCTGTTGAGACGACACTCGCACCACAGACTACACGTTTCCG
AAGCACGTACAGTAGTAGTCTTATCCCCAAGAAAACGTTGTCACCCACCC
CTCTCCTGTCTCCCCGCGTGGTACTCGAAATGCTGCGCAGGTCATGTTCT
GCTTCCCCGCAAACGACCGCCCCGCGAAAGGTCTCGGCTTTCGTTACGAA
TCGCCCTCCCTCCAGCATCGCGCTGATGTCTCGCCGCTCC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1593:7683..8522-

>mRNA_L-elsbetiae_contig1593.4098.1 ID=mRNA_L-elsbetiae_contig1593.4098.1|Name=mRNA_L-elsbetiae_contig1593.4098.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=516bp|location=Sequence derived from alignment at L-elsbetiae_contig1593:7683..8522- (Laminarionema elsbetiae ELsaHSoW15)
CAGGACCCGGGACCTAGTAAACTGCAGGTGCAAGTGCGGTACGGCGACAC
GGTTGAGGACATGCTCGAGAACGTACCCAACCCCGCCGACTCCCCGGAAT
GGTCCTCAGCGCCGTCAAGCCATCAGATATTCAAAGGGGGGCGCGAGATC
ATGATCGATCAGGACCCGGGACCTAGTAAACTGCAGGTGCAAGTGCGGTA
CGGCGACACGGTTGAGGACATGCTCGAGAACGTACCCAACCCCGCCGACT
CCCCGGAATGGTCCTCAGCGCCGTCAAGCCATCAGATATTCAAAGGGGGG
CGCGAGATCATGATCGATGTCATGTTCTGCTTCCCCGCAAACGACCGCCC
CGCGAAAGGTCTCGGCTTTCGTTACGAATCGCCCTCCCTCCAGCATCGCG
CTGATGTCTCGCCGCTCGTCATGTTCTGCTTCCCCGCAAACGACCGCCCC
GCGAAAGGTCTCGGCTTTCGTTACGAATCGCCCTCCCTCCAGCATCGCGC
TGATGTCTCGCCGCTC
back to top