mRNA_L-elsbetiae_contig1593.4096.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1593.4096.1
Unique NamemRNA_L-elsbetiae_contig1593.4096.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1593.4096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1593contigL-elsbetiae_contig1593:3766..4553 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size268
Cds size267
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1593.4096.1prot_L-elsbetiae_contig1593.4096.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1593 3766..4553 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815655.3124158-CDS-L-elsbetiae_contig1593:3765..38011622815655.3124158-CDS-L-elsbetiae_contig1593:3765..3801Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1593 3766..3801 -
1691683017.8510156-CDS-L-elsbetiae_contig1593:3765..38011691683017.8510156-CDS-L-elsbetiae_contig1593:3765..3801Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1593 3766..3801 -
1622815655.3247283-CDS-L-elsbetiae_contig1593:4106..42141622815655.3247283-CDS-L-elsbetiae_contig1593:4106..4214Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1593 4107..4214 -
1691683017.8618987-CDS-L-elsbetiae_contig1593:4106..42141691683017.8618987-CDS-L-elsbetiae_contig1593:4106..4214Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1593 4107..4214 -
1622815655.334759-CDS-L-elsbetiae_contig1593:4430..45531622815655.334759-CDS-L-elsbetiae_contig1593:4430..4553Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1593 4431..4553 -
1691683017.8699722-CDS-L-elsbetiae_contig1593:4430..45531691683017.8699722-CDS-L-elsbetiae_contig1593:4430..4553Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1593 4431..4553 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1593.4096.1

>prot_L-elsbetiae_contig1593.4096.1 ID=prot_L-elsbetiae_contig1593.4096.1|Name=mRNA_L-elsbetiae_contig1593.4096.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=89bp
GLNCDCVQCPDDLEDSPFESTDEEYQSCADADDGDAFCLEQAAEETRVGL
EAQGMGIECHKECYPGVAWPIGCFAEETVGCRYCRESCD
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mRNA from alignment at L-elsbetiae_contig1593:3766..4553-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1593.4096.1 ID=mRNA_L-elsbetiae_contig1593.4096.1|Name=mRNA_L-elsbetiae_contig1593.4096.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=788bp|location=Sequence derived from alignment at L-elsbetiae_contig1593:3766..4553- (Laminarionema elsbetiae ELsaHSoW15)
GGTCTAAATTGCGACTGCGTACAGTGCCCTGATGATCTGGAAGACTCGCC
TTTTGAGTCCACCGATGAGGAGTACCAATCTTGCGCGGACGCGGACGACG
GAGATGCCTTCTGTCTGGAACAGGTGAGTCACTGCCACCGTACGTACATA
GCTGACCCATATGGCGAACAGTGCACAGGTACACGCACGAACGTTCCCAG
GTGTTTCCTGAAAACAAATCTAAAGTTAAGCACAGCAGAGCACTGTAGTA
TATGCACATATACGACGAAAAATGTGTTGTCTGTTGTCTTTTGGGCATCT
GTCAATGTATTTGCGTCCCCTGCTGCTTTAATTTGGAAGGCGGCCGAAGA
AACGCGTGTGGGACTAGAGGCGCAAGGAATGGGTATCGAGTGCCACAAAG
AATGCTATCCCGGAGTGGCGTGGCCTATCGGGTGCTTCGCCGAAGAGGTC
AGTGTCTTCGATGTTAATAATGGCCTTTCCCACACCACCGCTGCTGTCGA
CGTGCTTCTGAATGCTTTCTATGTACACGGCAGACACATACAACAAGATG
CGTGATGTTGGCGAGGACTGTACATACTTCGTAGATACACAACCTGTCTG
TCGAACTCAAGCAACCATGCGTGTTGCAGACCGCTTGCAGCTCTCACACC
GTTTGGTCGAGATGAATAACAAGACCATGCATCCGAAGTTCTAGTCTAGA
TGGGGCACATCTAACGGTCCTTCATACTCTTCGCAACGGGCTCGCCTATC
AGACTGTTGGCTGCCGCTACTGTAGGGAAAGCTGCGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1593:3766..4553-

>mRNA_L-elsbetiae_contig1593.4096.1 ID=mRNA_L-elsbetiae_contig1593.4096.1|Name=mRNA_L-elsbetiae_contig1593.4096.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=534bp|location=Sequence derived from alignment at L-elsbetiae_contig1593:3766..4553- (Laminarionema elsbetiae ELsaHSoW15)
GGTCTAAATTGCGACTGCGTACAGTGCCCTGATGATCTGGAAGACTCGCC
TTTTGAGTCCACCGATGAGGAGTACCAATCTTGCGCGGACGCGGACGACG
GAGATGCCTTCTGTCTGGAACAGGGTCTAAATTGCGACTGCGTACAGTGC
CCTGATGATCTGGAAGACTCGCCTTTTGAGTCCACCGATGAGGAGTACCA
ATCTTGCGCGGACGCGGACGACGGAGATGCCTTCTGTCTGGAACAGGCGG
CCGAAGAAACGCGTGTGGGACTAGAGGCGCAAGGAATGGGTATCGAGTGC
CACAAAGAATGCTATCCCGGAGTGGCGTGGCCTATCGGGTGCTTCGCCGA
AGAGGCGGCCGAAGAAACGCGTGTGGGACTAGAGGCGCAAGGAATGGGTA
TCGAGTGCCACAAAGAATGCTATCCCGGAGTGGCGTGGCCTATCGGGTGC
TTCGCCGAAGAGACTGTTGGCTGCCGCTACTGTAGGGAAAGCTGCGACAC
TGTTGGCTGCCGCTACTGTAGGGAAAGCTGCGAC
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