mRNA_L-elsbetiae_contig15926.4094.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15926.4094.1
Unique NamemRNA_L-elsbetiae_contig15926.4094.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig15926.4094.1 vs. uniprot
Match: D7FY84_ECTSI (SGF29 C-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY84_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 5.310e-31
Identity = 58/77 (75.32%), Postives = 65/77 (84.42%), Query Frame = 2 
Query:    2 AHALGQVEGGKAGFLQICKIIEEQFEPHLNWKLESDVRKTPVWRSSVRKICFSNTRFQHITTTTELGHVFTLARPRK 232
            AHALG+VE GK  F QIC IIE QF  +LNWKLESDVRKTPVW+SSVRKI FSN+RFQH +TT ELGHVFT+AR +K
Sbjct:  441 AHALGKVENGKGAFTQICNIIERQFSEYLNWKLESDVRKTPVWKSSVRKILFSNSRFQHHSTTPELGHVFTMARSKK 517
[Close]
BLAST of mRNA_L-elsbetiae_contig15926.4094.1 vs. uniprot
Match: T0R4L9_SAPDV (Fork-head domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R4L9_SAPDV)

HSP 1 Score: 77.8 bits (190), Expect = 4.120e-16
Identity = 35/58 (60.34%), Postives = 44/58 (75.86%), Query Frame = 2 
Query:    2 AHALGQVEGGKAGFLQICKIIEEQFEPHLNWKLESDVRKTPVWRSSVRKICFSNTRFQ 175
            +HAL  +  G+  F  IC+ IE Q+E  LNWKLESD RK+PVW+SSVRKI FSN+RF+
Sbjct:    3 SHALRSMPRGEGTFKDICEYIEAQYESQLNWKLESDQRKSPVWKSSVRKILFSNSRFK 60
[Close]
BLAST of mRNA_L-elsbetiae_contig15926.4094.1 vs. uniprot
Match: F0W7Z1_9STRA (Uncharacterized protein AlNc14C32G2941 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W7Z1_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 5.080e-16
Identity = 37/58 (63.79%), Postives = 44/58 (75.86%), Query Frame = 2 
Query:    2 AHALGQVEGGKAGFLQICKIIEEQFEPHLNWKLESDVRKTPVWRSSVRKICFSNTRFQ 175
            +HAL    GGKA F  IC  +E ++E HLNWKLE D RK+PVW+SSVRKI FSNTRF+
Sbjct:  310 SHALRVSPGGKASFKTICDFVETEYESHLNWKLEGDQRKSPVWKSSVRKILFSNTRFR 367
[Close]
BLAST of mRNA_L-elsbetiae_contig15926.4094.1 vs. uniprot
Match: G4ZXV6_PHYSP (PHD-type domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZXV6_PHYSP)

HSP 1 Score: 82.8 bits (203), Expect = 8.690e-16
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 2 
Query:    2 AHALGQVEGGKAGFLQICKIIEEQFEPHLNWKLESDVRKTPVWRSSVRKICFSNTRFQ 175
            AHAL  + GGK  F +IC+ +E ++E  LNWKLESD RK+PVW+SSVRKI FSN RF+
Sbjct:  294 AHALTVLPGGKGSFKEICEFVEAEYESQLNWKLESDQRKSPVWKSSVRKILFSNVRFR 351
[Close]
BLAST of mRNA_L-elsbetiae_contig15926.4094.1 vs. uniprot
Match: A0A0P1B6Z8_PLAHL (PHD-type domain-containing protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B6Z8_PLAHL)

HSP 1 Score: 82.0 bits (201), Expect = 1.760e-15
Identity = 36/58 (62.07%), Postives = 44/58 (75.86%), Query Frame = 2 
Query:    2 AHALGQVEGGKAGFLQICKIIEEQFEPHLNWKLESDVRKTPVWRSSVRKICFSNTRFQ 175
            +HAL  + GGK  F +IC  +E ++E  LNWKLESD RK+PVW+SSVRKI FSN RFQ
Sbjct:  304 SHALTVLPGGKGSFKEICDFVEMEYESQLNWKLESDQRKSPVWKSSVRKILFSNVRFQ 361
[Close]
BLAST of mRNA_L-elsbetiae_contig15926.4094.1 vs. uniprot
Match: A0A067BXK9_SAPPC (PHD domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BXK9_SAPPC)

HSP 1 Score: 78.6 bits (192), Expect = 2.320e-15
Identity = 36/63 (57.14%), Postives = 46/63 (73.02%), Query Frame = 2 
Query:    2 AHALGQVEGGKAGFLQICKIIEEQFEPHLNWKLESDVRKTPVWRSSVRKICFSNTRFQHITTT 190
            +HAL  +  G+  F  IC+ IE Q+E  LNWKLESD RK+PVW+SSVRKI FSN+RF+  + T
Sbjct:  100 SHALRSMPRGEGTFKDICEYIEAQYESQLNWKLESDQRKSPVWKSSVRKILFSNSRFKRHSIT 162
[Close]
BLAST of mRNA_L-elsbetiae_contig15926.4094.1 vs. uniprot
Match: A0A6A3SHM3_9STRA (PHD-type domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3SHM3_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 3.140e-15
Identity = 36/58 (62.07%), Postives = 43/58 (74.14%), Query Frame = 2 
Query:    2 AHALGQVEGGKAGFLQICKIIEEQFEPHLNWKLESDVRKTPVWRSSVRKICFSNTRFQ 175
            AHAL  + GGK  F  IC  +E ++E  LNWKLESD RK+PVW+SSVRKI FSN RF+
Sbjct:  294 AHALTVLPGGKGSFKDICDFVEAEYESQLNWKLESDQRKSPVWKSSVRKILFSNVRFR 351
[Close]
BLAST of mRNA_L-elsbetiae_contig15926.4094.1 vs. uniprot
Match: A0A2P4X1K7_9STRA (PHD-type domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X1K7_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 4.190e-15
Identity = 35/58 (60.34%), Postives = 44/58 (75.86%), Query Frame = 2 
Query:    2 AHALGQVEGGKAGFLQICKIIEEQFEPHLNWKLESDVRKTPVWRSSVRKICFSNTRFQ 175
            +HAL  + GGK  F +IC  +E ++E  LNWKLESD RK+PVW+SSVRKI FSN RF+
Sbjct:  289 SHALTVLPGGKGSFKEICDFVETEYESQLNWKLESDQRKSPVWKSSVRKILFSNVRFR 346
[Close]
BLAST of mRNA_L-elsbetiae_contig15926.4094.1 vs. uniprot
Match: A0A225VTY5_9STRA (PHD-type domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VTY5_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 4.330e-15
Identity = 35/58 (60.34%), Postives = 44/58 (75.86%), Query Frame = 2 
Query:    2 AHALGQVEGGKAGFLQICKIIEEQFEPHLNWKLESDVRKTPVWRSSVRKICFSNTRFQ 175
            +HAL  + GGK  F +IC  +E ++E  LNWKLESD RK+PVW+SSVRKI FSN RF+
Sbjct:  294 SHALTVLPGGKGSFKEICDFVETEYESQLNWKLESDQRKSPVWKSSVRKILFSNVRFR 351
[Close]
BLAST of mRNA_L-elsbetiae_contig15926.4094.1 vs. uniprot
Match: W2QGX9_PHYPN (PHD-type domain-containing protein n=34 Tax=Phytophthora TaxID=4783 RepID=W2QGX9_PHYPN)

HSP 1 Score: 80.9 bits (198), Expect = 5.470e-15
Identity = 35/58 (60.34%), Postives = 44/58 (75.86%), Query Frame = 2 
Query:    2 AHALGQVEGGKAGFLQICKIIEEQFEPHLNWKLESDVRKTPVWRSSVRKICFSNTRFQ 175
            +HAL  + GGK  F +IC  +E ++E  LNWKLESD RK+PVW+SSVRKI FSN RF+
Sbjct:  340 SHALTVLPGGKGSFKEICDFVETEYESQLNWKLESDQRKSPVWKSSVRKILFSNVRFR 397
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15926.4094.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FY84_ECTSI5.310e-3175.32SGF29 C-terminal domain-containing protein n=2 Tax... [more]
T0R4L9_SAPDV4.120e-1660.34Fork-head domain-containing protein n=1 Tax=Saprol... [more]
F0W7Z1_9STRA5.080e-1663.79Uncharacterized protein AlNc14C32G2941 n=1 Tax=Alb... [more]
G4ZXV6_PHYSP8.690e-1662.07PHD-type domain-containing protein n=1 Tax=Phytoph... [more]
A0A0P1B6Z8_PLAHL1.760e-1562.07PHD-type domain-containing protein n=1 Tax=Plasmop... [more]
A0A067BXK9_SAPPC2.320e-1557.14PHD domain-containing protein n=1 Tax=Saprolegnia ... [more]
A0A6A3SHM3_9STRA3.140e-1562.07PHD-type domain-containing protein n=4 Tax=Phytoph... [more]
A0A2P4X1K7_9STRA4.190e-1560.34PHD-type domain-containing protein n=1 Tax=Phytoph... [more]
A0A225VTY5_9STRA4.330e-1560.34PHD-type domain-containing protein n=1 Tax=Phytoph... [more]
W2QGX9_PHYPN5.470e-1560.34PHD-type domain-containing protein n=34 Tax=Phytop... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15926contigL-elsbetiae_contig15926:832..3356 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size465
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15926.4094.1prot_L-elsbetiae_contig15926.4094.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15926 841..2376 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815655.2333164-UTR-L-elsbetiae_contig15926:831..8401622815655.2333164-UTR-L-elsbetiae_contig15926:831..840Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15926 832..840 -
1691683017.8049443-UTR-L-elsbetiae_contig15926:831..8401691683017.8049443-UTR-L-elsbetiae_contig15926:831..840Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15926 832..840 -
1622815655.2698503-UTR-L-elsbetiae_contig15926:2376..24211622815655.2698503-UTR-L-elsbetiae_contig15926:2376..2421Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15926 2377..2421 -
1691683017.8319366-UTR-L-elsbetiae_contig15926:2376..24211691683017.8319366-UTR-L-elsbetiae_contig15926:2376..2421Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15926 2377..2421 -
1622815655.2800217-UTR-L-elsbetiae_contig15926:3251..33561622815655.2800217-UTR-L-elsbetiae_contig15926:3251..3356Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15926 3252..3356 -
1691683017.8416154-UTR-L-elsbetiae_contig15926:3251..33561691683017.8416154-UTR-L-elsbetiae_contig15926:3251..3356Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15926 3252..3356 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815655.245912-CDS-L-elsbetiae_contig15926:840..11281622815655.245912-CDS-L-elsbetiae_contig15926:840..1128Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15926 841..1128 -
1691683017.8141673-CDS-L-elsbetiae_contig15926:840..11281691683017.8141673-CDS-L-elsbetiae_contig15926:840..1128Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15926 841..1128 -
1622815655.2583697-CDS-L-elsbetiae_contig15926:2358..23761622815655.2583697-CDS-L-elsbetiae_contig15926:2358..2376Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15926 2359..2376 -
1691683017.8231635-CDS-L-elsbetiae_contig15926:2358..23761691683017.8231635-CDS-L-elsbetiae_contig15926:2358..2376Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15926 2359..2376 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15926.4094.1

>prot_L-elsbetiae_contig15926.4094.1 ID=prot_L-elsbetiae_contig15926.4094.1|Name=mRNA_L-elsbetiae_contig15926.4094.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=102bp
MFLQYQVPAHHHHHGAGARLHLGSTQEVARPREPHPSIPGLKNRSAARSI
ITAVQSKLLAFASLFDLRGRRHRGRGRDRGRVRCSGRKTEARPSSEMKIL
S*
back to top

mRNA from alignment at L-elsbetiae_contig15926:832..3356-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15926.4094.1 ID=mRNA_L-elsbetiae_contig15926.4094.1|Name=mRNA_L-elsbetiae_contig15926.4094.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2525bp|location=Sequence derived from alignment at L-elsbetiae_contig15926:832..3356- (Laminarionema elsbetiae ELsaHSoW15)
CGCCCACGCGCTGGGGCAGGTGGAGGGCGGCAAGGCGGGCTTCTTGCAGA
TCTGCAAAATCATCGAGGAGCAGTTCGAGCCGCACCTCAACTGGAAGCTC
GAGAGGTGGGTGGGTGGGTAATATGTAGATGATGTTGACAGTCCCGTTGA
CGGTCCCGTGATGTTGTTGTTGTTGATGATTTTTGGGGCGGTGTTTTTTG
TTGTTGTGGTTGTTTGCTTGTGGAGGACGAGAGGTGACTGCTGTTGAGCT
TTTTGGTTCTGGCGTACACGTGTAATTAAACGGGAGAGCGGGAGAGGAAG
CAGAGTGGGGAGATAGTGGAGAGAGAGAGACAGATGACGAGAGAGCGAGA
CAGAGAGAGAGATAACGAGAGAGATGAAGAGAGAGCGAGACAGAGAGAGC
GAGAGAGATAGAGAGAGGGATAGGGATAGGGAGGGAGAGAGAGACAGAGA
GAGCGAGACAGAGAGAGAGAGAGGGATAGGGAGAGAGAGAGAGACAGACA
GACAGAGAGAGAGAGGAAGCCCTCACGGCGGGCTGCAGCCGTCCTGTCGT
GGTGCAGACGGCCCGGAAGGATCGATCGTGTCATCTTCGGTAGATCTTGC
ATCTTGCTTGATCACCCTGCTTTTGATCGATCGCGGTTTATTTGCACCCG
GTGCGATCGTGGTTCCTCGCGTGCCTGAAACGATCGATCGTGCAATCTTC
GTAGACCTTGCATCCTTGTTCGCCCTGCTCTCGATACCCGGTTCGGTCGT
GGCTCCTTGCCTGCCCCCCCCCCCCGCGTCTTCCGGTGAATTGACTTAAT
CCTCCCTCTTGTCCCTCATCTTGGCTGGTGCTGCTCTCCCCATGTCCCTT
CCCGATTTTTCTCTCTTTCTCTTTCTCTATCCCTCCCTATCCCTCTCTCT
CTGTTTAAATGGGGTGGGCACCGTGCGGTACTCAGCGACGTCCGCAAGAC
CCCGGTGTGGAGGTCATCCGTCCGAAAAATATGTTTCTCCAATACCAGGT
GTGTATCCATGCTTATGGTTCTATGTGTGACAGGAAGAGAGAGAGAGAGA
GAGAGAGAGAAATGAGGGGAGTTAGACGACAAGGCACAAGATTTTTGCTT
CTTCTCTGGCCATGTGTGACAGGATGAGTGAGGGACAAGAGCAGAGAGAA
AGAAACGAGGGGAATTAGATGGCAAGGCACAATCTTCAATAATTTTGCTT
CTTCTCCAGCCTTTGGTTACCCTCCGGATTAGGTCGTGTCCTCTTACTAT
CTGCTTGAAACCGTCAATATTGTTTTTTCGGCGCTGCCGCCGATGCGAAG
TGTATGCTTGCTCCTTCACCCTCTAGTAGCCTGTTCGGCCGCAGCAGCGG
TATGTATGTATTGTGGTCGTTTGCAGCGGCCATTTTTGCATGCGAAACGA
TTGAAAATTCTGATGAGACGACGACCTTTTGACGAGACGCCGTGTCTCGC
GCGTGTGGTGGTGGAGTTCGCTCGTGCGCCTCGAAAGAGATACTGTAGAC
AGGCAGAGAGAGAGGGGAAGAGAGCCGAAACGGTGCTACAATGCGGAGAC
TGGAGCAGAAACCCATCACCTGCGTGCGCGCGTGCCTTCCTGTGTGTGTG
TGTGTGACTAAAACTACTTGAAGGCCGACCTCGCAAATCTTTGCAGGGGA
GATGTTGAACTCTTCTGATATTTTAGGTTGTTTTTCTGCTCGCTTCGCCA
AATATTACATCACTGTATGGAATCCCGTTTGAACCCCATATCGAGTCCTT
GCTCTGGTGTGGGGTAGGTTCCATCTTTGATTCATTGTTTATTTTTTAAA
ATGTCGGCTGTATGTACAGAAACACTTGCGGTACTCCAGCTAAGGCGTTA
CTGGCGCCAAACCATCCGTCCTACGTATGTATCTACGTAGATACCATGTG
TGCATTACGTTTTTTTTTCTGTGCTACATGCACCAACTCAACCCACTTCG
ACCTCACCGTCGACGAGGGAAAGGGACGGCTGAACCCTTCTCGCGACAAA
AATCTTAGGCTTAAAGCACCGCAGACAGGGGGAGTGGGGGCCTTGGGGGG
CTGAACCCTTCTGCTGTGTAACCACGGCTGGCTCAGTACTCCGGCAAGAT
GTCCTCGTGACAGGGAGTCAGCCCATCGAGCACTGGAAATAAATGCGAAT
AAAAAAATAAAAAAACTGCGCAATCCAACACAACACAACACAACCCAACA
CGACCCGCAACAAACTCTCCCTACCCAGGTTCCAGCACATCACCACCACC
ACGGAGCTGGGGCACGTCTTCACCTTGGCTCGACCCAGGAAGTAGCTCGA
CCCCGAGAGCCCCATCCGTCCATCCCTGGCCTCAAAAATCGAAGCGCCGC
TCGCTCGATTATCACTGCTGTTCAATCAAAGCTTTTGGCTTTTGCTTCTC
TCTTTGATCTTCGCGGGCGGCGGCATCGTGGTCGTGGTCGTGATCGTGGT
CGCGTCCGATGTTCCGGACGGAAGACCGAAGCCCGACCTTCGTCCGAAAT
GAAAATCCTCTCGTGAGTTTCAGGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig15926:832..3356-

>mRNA_L-elsbetiae_contig15926.4094.1 ID=mRNA_L-elsbetiae_contig15926.4094.1|Name=mRNA_L-elsbetiae_contig15926.4094.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig15926:832..3356- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTCTCCAATACCAGATGTTTCTCCAATACCAGGTTCCAGCACATCA
CCACCACCACGGAGCTGGGGCACGTCTTCACCTTGGCTCGACCCAGGAAG
TAGCTCGACCCCGAGAGCCCCATCCGTCCATCCCTGGCCTCAAAAATCGA
AGCGCCGCTCGCTCGATTATCACTGCTGTTCAATCAAAGCTTTTGGCTTT
TGCTTCTCTCTTTGATCTTCGCGGGCGGCGGCATCGTGGTCGTGGTCGTG
ATCGTGGTCGCGTCCGATGTTCCGGACGGAAGACCGAAGCCCGACCTTCG
TCCGAAATGAAAATCCTCTCGTGAGTTCCAGCACATCACCACCACCACGG
AGCTGGGGCACGTCTTCACCTTGGCTCGACCCAGGAAGTAGCTCGACCCC
GAGAGCCCCATCCGTCCATCCCTGGCCTCAAAAATCGAAGCGCCGCTCGC
TCGATTATCACTGCTGTTCAATCAAAGCTTTTGGCTTTTGCTTCTCTCTT
TGATCTTCGCGGGCGGCGGCATCGTGGTCGTGGTCGTGATCGTGGTCGCG
TCCGATGTTCCGGACGGAAGACCGAAGCCCGACCTTCGTCCGAAATGAAA
ATCCTCTCGTGA
back to top