mRNA_L-elsbetiae_contig1592.4087.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1592.4087.1
Unique NamemRNA_L-elsbetiae_contig1592.4087.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1592.4087.1 vs. uniprot
Match: D7FTS4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTS4_ECTSI)

HSP 1 Score: 423 bits (1088), Expect = 1.890e-138
Identity = 270/490 (55.10%), Postives = 327/490 (66.73%), Query Frame = 1 
Query:    4 VDPQVELMEDLANELILDGAVKEAFFSSGDIFFEIARRVEATAATAEAASSAAEDNTACTQDEFDRNVGGAPRWDSWREVFADARLISAAAAVLDAAFFHSLRFPQRVCLVGRPKPSSLPVVADNLFYVYCALRRRMMRQPSGADGAGGIEREKGLDGVYSADDECMTKKGAEEAACPMVAWGKMSRGVLDRIVRALNGISDVISLFNIENESLGLVRNLVGVGIGTDVRAGTQPAASDALKFLIRVNDRTVGLIEDLDRQEKQRRQLEAERLLANGPAAVSPNSEKAGKGRRRSVFARLASLSPGSSRSRRSLTPPLTXXXXXANQPTARGSVVSGDKGGGLQHLLEEGRRGGSEVGGAGKGTSRRRRR-----VGSVPGSDASPRARRGG------PLPPPVVHGV-SQPPPSRQFLGTPPVLLHSYAKLLNSLVCGSYNLRAAYCSSCEADLRNIGREGGYLDMLAGLDGGTPRMIYGQTALFLHEI 1437
            VD QVELM+DLA+E+ILD  VKEAFFS+GDIFFEI+RR+EA AAT  A S+    NTA  +  F R+ G    +D  R V +DARLISA AAVLDAAFFHS++ PQR+ LVGRPKP SLP VA++L +VYCAL RR++      DGA   + + G             ++ AE+A  P+ A   +S GVLDR+VRALNGISDV+SLFNIE+E LG+VRNLVGVG+G  VR G QPAASDAL F++RVNDR V LIEDLDR+E++RRQLE  RLLA GP +VSP SEK  KG++RSVFARL SLSP   R RRS+TPPL+        P   G     D      + + EG  G +    A  G  ++ +       G + G       RRGG      P PP       SQ    R FL + PVLLHSYAKLLN+LVCGSYNLR A+ SSCE D+RNIGREGGYLD+L+ LDGG PR+++ QTALFLHEI
Sbjct:  111 VDAQVELMQDLADEMILDAVVKEAFFSTGDIFFEISRRLEAAAATVAAGSAV---NTAAGEIAF-RHDG----FDGRRAVVSDARLISATAAVLDAAFFHSIQIPQRIDLVGRPKPMSLPAVAEHLVFVYCALCRRIVTNCE--DGADNSDIDTGGRNDLKGFSPAGVERLAEDAMSPLDA---LSTGVLDRVVRALNGISDVVSLFNIEHEHLGIVRNLVGVGLGVKVRVGIQPAASDALAFVVRVNDRAVDLIEDLDRREQERRQLEEARLLALGPVSVSPTSEK-NKGKKRSVFARLGSLSP---RPRRSVTPPLSPPSPAVEPPV--GLPPINDNSDVRTNYILEGGSGSASKTTARAGVPKQEKSDVDNASGGLLGGLVGLEGRRGGGNSVGSPPPPSATQCFESQVSSPRGFLSSAPVLLHSYAKLLNALVCGSYNLREAFFSSCEVDIRNIGREGGYLDVLSRLDGGAPRLVFRQTALFLHEI 581
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1592.4087.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTS4_ECTSI1.890e-13855.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1592contigL-elsbetiae_contig1592:640..2774 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1716
Cds size1434
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1592.4087.1prot_L-elsbetiae_contig1592.4087.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1592 664..2516 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815654.79341-UTR-L-elsbetiae_contig1592:639..6631622815654.79341-UTR-L-elsbetiae_contig1592:639..663Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1592 640..663 +
1691683017.5977635-UTR-L-elsbetiae_contig1592:639..6631691683017.5977635-UTR-L-elsbetiae_contig1592:639..663Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1592 640..663 +
1622815654.8471615-UTR-L-elsbetiae_contig1592:2516..27741622815654.8471615-UTR-L-elsbetiae_contig1592:2516..2774Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1592 2517..2774 +
1691683017.6306298-UTR-L-elsbetiae_contig1592:2516..27741691683017.6306298-UTR-L-elsbetiae_contig1592:2516..2774Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1592 2517..2774 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815654.8042977-CDS-L-elsbetiae_contig1592:663..12481622815654.8042977-CDS-L-elsbetiae_contig1592:663..1248Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1592 664..1248 +
1691683017.6066015-CDS-L-elsbetiae_contig1592:663..12481691683017.6066015-CDS-L-elsbetiae_contig1592:663..1248Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1592 664..1248 +
1622815654.8205557-CDS-L-elsbetiae_contig1592:1445..21981622815654.8205557-CDS-L-elsbetiae_contig1592:1445..2198Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1592 1446..2198 +
1691683017.6146197-CDS-L-elsbetiae_contig1592:1445..21981691683017.6146197-CDS-L-elsbetiae_contig1592:1445..2198Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1592 1446..2198 +
1622815654.8317323-CDS-L-elsbetiae_contig1592:2420..25161622815654.8317323-CDS-L-elsbetiae_contig1592:2420..2516Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1592 2421..2516 +
1691683017.622509-CDS-L-elsbetiae_contig1592:2420..25161691683017.622509-CDS-L-elsbetiae_contig1592:2420..2516Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1592 2421..2516 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1592.4087.1

>prot_L-elsbetiae_contig1592.4087.1 ID=prot_L-elsbetiae_contig1592.4087.1|Name=mRNA_L-elsbetiae_contig1592.4087.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=478bp
MEDLANELILDGAVKEAFFSSGDIFFEIARRVEATAATAEAASSAAEDNT
ACTQDEFDRNVGGAPRWDSWREVFADARLISAAAAVLDAAFFHSLRFPQR
VCLVGRPKPSSLPVVADNLFYVYCALRRRMMRQPSGADGAGGIEREKGLD
GVYSADDECMTKKGAEEAACPMVAWGKMSRGVLDRIVRALNGISDVISLF
NIENESLGLVRNLVGVGIGTDVRAGTQPAASDALKFLIRVNDRTVGLIED
LDRQEKQRRQLEAERLLANGPAAVSPNSEKAGKGRRRSVFARLASLSPGS
SRSRRSLTPPLTPPESPANQPTARGSVVSGDKGGGLQHLLEEGRRGGSEV
GGAGKGTSRRRRRVGSVPGSDASPRARRGGPLPPPVVHGVSQPPPSRQFL
GTPPVLLHSYAKLLNSLVCGSYNLRAAYCSSCEADLRNIGREGGYLDMLA
GLDGGTPRMIYGQTALFLHEILVECHL*
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mRNA from alignment at L-elsbetiae_contig1592:640..2774+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1592.4087.1 ID=mRNA_L-elsbetiae_contig1592.4087.1|Name=mRNA_L-elsbetiae_contig1592.4087.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2135bp|location=Sequence derived from alignment at L-elsbetiae_contig1592:640..2774+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGTCGATCCCCAGGTCGAACTTATGGAAGATCTCGCAAACGAGTTGAT
ATTGGACGGTGCGGTCAAGGAGGCGTTTTTTTCTTCCGGCGACATCTTCT
TCGAAATCGCACGAAGAGTCGAAGCCACGGCCGCTACCGCGGAGGCCGCT
AGCTCTGCCGCAGAAGACAATACCGCATGTACACAGGATGAATTTGATAG
GAATGTTGGCGGCGCACCACGATGGGATAGCTGGCGAGAGGTTTTTGCTG
ACGCGCGCTTGATTTCTGCCGCAGCCGCCGTCCTCGACGCAGCTTTTTTT
CACAGTCTTCGGTTTCCACAGAGAGTTTGTCTCGTCGGACGACCGAAGCC
TTCGTCTCTTCCTGTCGTGGCGGATAATCTGTTTTACGTGTACTGTGCCC
TACGCCGCCGAATGATGAGACAACCAAGTGGCGCTGATGGCGCTGGCGGA
ATCGAACGCGAAAAGGGCCTTGATGGTGTCTATTCCGCGGACGATGAATG
CATGACCAAGAAGGGCGCAGAAGAAGCAGCATGCCCGATGGTAGCCTGGG
GCAAGATGTCACGGGGCGTCCTAGACCGCATTGTTCGGGCGCTTAACGGG
ATAAGTGACGTGAGTTTAGTTTCCATAAACTCTACCATATGTACAATGCC
CTGATTGGGAAAACGTTTTCGACCTTGTACATAGTCTCGTGCACGGGTAG
ATAGGACACCTGAGAAGCCTTCCCGACCGAGTGCTTCCATGCCCAGCGTT
CCCCATCATCAACATCCCATATATTCGAACCGTGAGCTTTCTGTTACACG
TGACAGGTAATTAGTCTCTTTAATATAGAGAACGAAAGTCTGGGCTTGGT
CCGGAATCTCGTCGGCGTCGGAATCGGAACCGACGTTCGCGCCGGAACCC
AGCCGGCAGCGTCGGACGCACTCAAGTTCCTCATTCGGGTCAACGATCGC
ACCGTCGGCCTCATCGAGGATCTTGACCGCCAGGAGAAGCAGCGGAGGCA
GTTGGAGGCGGAACGCCTGCTCGCGAATGGGCCAGCTGCTGTTTCCCCCA
ACTCCGAGAAGGCGGGCAAAGGCAGAAGGAGGAGTGTGTTCGCTAGGCTT
GCTTCTCTCTCCCCAGGCTCATCACGCTCGCGGCGATCGCTGACCCCGCC
CTTGACTCCTCCTGAGTCGCCAGCCAACCAGCCGACAGCCCGAGGTTCAG
TGGTCAGCGGCGATAAGGGCGGTGGATTGCAGCATCTCTTGGAAGAGGGG
CGGCGCGGCGGCTCCGAAGTGGGCGGGGCTGGAAAGGGCACGTCCCGGCG
AAGAAGGAGAGTGGGCAGCGTGCCGGGTTCGGATGCTTCGCCTCGAGCGA
GGAGAGGCGGGCCGCTCCCACCGCCGGTGGTGCACGGTGTGTCTCAGCCG
CCGCCGTCGCGACAGTTTTTAGGCACCCCCCCGGTACTCTTGCACTCATA
CGCGAAGCTACTGAACTCGCTGGTGTGCGGGAGCTACAACTTGAGAGCGG
CCTACTGTTCGTCGTGCGAAGCTGATCTCCGCAACATCGGGCGTGAGGGC
GGTTACCTGGTGAGAGTTATTCGAGACTTTGGGTTGGGTACGGATCTGAG
GGGGCAGGGTTTTTGGTGCACGGTATGTATTTACTGTGAAATTTTGCGCG
ATCTGGCGTTGGTGCTTCGTGTGACGGCGCTTTCGTGCCCTCCATATCAC
AGAGCCATGTAACTCACCGGTTGAAGAAAGCACGTAGTTCAGTGTGATAA
CTTTCCTGTCGTGCCTCATGGCGCCGCCCAGGACATGCTGGCGGGACTCG
ACGGTGGGACGCCTCGGATGATTTACGGGCAGACCGCTCTTTTCTTGCAC
GAGATTCTGGTTGAGTGCCACCTTTGAAGGGAGCAGGGGGCGCCGTTCCG
TTGTTGTCCCGCACAGTCTTCCGGAAGAGGAACGCATTGTACGTGTTTAG
AGGGATGAAAACACGGGGGAGAATATTTTGATGAGCAGGGGGTTGCACAG
GTGGCTTATGCTGCGCGGCAGAGTTGGAGGCAAGAGCTCTACGGTGGGTC
ATCTATCCACTTTTACCGGACCATACAGTAAGTAGTTGAAAACACAAAGC
CGCATCTTTTTTTCAAGAAATGCATTGGAGGATGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1592:640..2774+

>mRNA_L-elsbetiae_contig1592.4087.1 ID=mRNA_L-elsbetiae_contig1592.4087.1|Name=mRNA_L-elsbetiae_contig1592.4087.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2868bp|location=Sequence derived from alignment at L-elsbetiae_contig1592:640..2774+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAAGATCTCGCAAACGAGTTGATATTGGACGGTGCGGTCAAGGAGGC
GTTTTTTTCTTCCGGCGACATCTTCTTCGAAATCGCACGAAGAGTCGAAG
CCACGGCCGCTACCGCGGAGGCCGCTAGCTCTGCCGCAGAAGACAATACC
GCATGTACACAGGATGAATTTGATAGGAATGTTGGCGGCGCACCACGATG
GGATAGCTGGCGAGAGGTTTTTGCTGACGCGCGCTTGATTTCTGCCGCAG
CCGCCGTCCTCGACGCAGCTTTTTTTCACAGTCTTCGGTTTCCACAGAGA
GTTTGTCTCGTCGGACGACCGAAGCCTTCGTCTCTTCCTGTCGTGGCGGA
TAATCTGTTTTACGTGTACTGTGCCCTACGCCGCCGAATGATGAGACAAC
CAAGTGGCGCTGATGGCGCTGGCGGAATCGAACGCGAAAAGGGCCTTGAT
GGTGTCTATTCCGCGGACGATGAATGCATGACCAAGAAGGGCGCAGAAGA
AGCAGCATGCCCGATGGTAGCCTGGGGCAAGATGTCACGGGGCGTCCTAG
ACCGCATTGTTCGGGCGCTTAACGGGATAAGTGACATGGAAGATCTCGCA
AACGAGTTGATATTGGACGGTGCGGTCAAGGAGGCGTTTTTTTCTTCCGG
CGACATCTTCTTCGAAATCGCACGAAGAGTCGAAGCCACGGCCGCTACCG
CGGAGGCCGCTAGCTCTGCCGCAGAAGACAATACCGCATGTACACAGGAT
GAATTTGATAGGAATGTTGGCGGCGCACCACGATGGGATAGCTGGCGAGA
GGTTTTTGCTGACGCGCGCTTGATTTCTGCCGCAGCCGCCGTCCTCGACG
CAGCTTTTTTTCACAGTCTTCGGTTTCCACAGAGAGTTTGTCTCGTCGGA
CGACCGAAGCCTTCGTCTCTTCCTGTCGTGGCGGATAATCTGTTTTACGT
GTACTGTGCCCTACGCCGCCGAATGATGAGACAACCAAGTGGCGCTGATG
GCGCTGGCGGAATCGAACGCGAAAAGGGCCTTGATGGTGTCTATTCCGCG
GACGATGAATGCATGACCAAGAAGGGCGCAGAAGAAGCAGCATGCCCGAT
GGTAGCCTGGGGCAAGATGTCACGGGGCGTCCTAGACCGCATTGTTCGGG
CGCTTAACGGGATAAGTGACGTAATTAGTCTCTTTAATATAGAGAACGAA
AGTCTGGGCTTGGTCCGGAATCTCGTCGGCGTCGGAATCGGAACCGACGT
TCGCGCCGGAACCCAGCCGGCAGCGTCGGACGCACTCAAGTTCCTCATTC
GGGTCAACGATCGCACCGTCGGCCTCATCGAGGATCTTGACCGCCAGGAG
AAGCAGCGGAGGCAGTTGGAGGCGGAACGCCTGCTCGCGAATGGGCCAGC
TGCTGTTTCCCCCAACTCCGAGAAGGCGGGCAAAGGCAGAAGGAGGAGTG
TGTTCGCTAGGCTTGCTTCTCTCTCCCCAGGCTCATCACGCTCGCGGCGA
TCGCTGACCCCGCCCTTGACTCCTCCTGAGTCGCCAGCCAACCAGCCGAC
AGCCCGAGGTTCAGTGGTCAGCGGCGATAAGGGCGGTGGATTGCAGCATC
TCTTGGAAGAGGGGCGGCGCGGCGGCTCCGAAGTGGGCGGGGCTGGAAAG
GGCACGTCCCGGCGAAGAAGGAGAGTGGGCAGCGTGCCGGGTTCGGATGC
TTCGCCTCGAGCGAGGAGAGGCGGGCCGCTCCCACCGCCGGTGGTGCACG
GTGTGTCTCAGCCGCCGCCGTCGCGACAGTTTTTAGGCACCCCCCCGGTA
CTCTTGCACTCATACGCGAAGCTACTGAACTCGCTGGTGTGCGGGAGCTA
CAACTTGAGAGCGGCCTACTGTTCGTCGTGCGAAGCTGATCTCCGCAACA
TCGGGCGTGAGGGCGGTTACCTGGTAATTAGTCTCTTTAATATAGAGAAC
GAAAGTCTGGGCTTGGTCCGGAATCTCGTCGGCGTCGGAATCGGAACCGA
CGTTCGCGCCGGAACCCAGCCGGCAGCGTCGGACGCACTCAAGTTCCTCA
TTCGGGTCAACGATCGCACCGTCGGCCTCATCGAGGATCTTGACCGCCAG
GAGAAGCAGCGGAGGCAGTTGGAGGCGGAACGCCTGCTCGCGAATGGGCC
AGCTGCTGTTTCCCCCAACTCCGAGAAGGCGGGCAAAGGCAGAAGGAGGA
GTGTGTTCGCTAGGCTTGCTTCTCTCTCCCCAGGCTCATCACGCTCGCGG
CGATCGCTGACCCCGCCCTTGACTCCTCCTGAGTCGCCAGCCAACCAGCC
GACAGCCCGAGGTTCAGTGGTCAGCGGCGATAAGGGCGGTGGATTGCAGC
ATCTCTTGGAAGAGGGGCGGCGCGGCGGCTCCGAAGTGGGCGGGGCTGGA
AAGGGCACGTCCCGGCGAAGAAGGAGAGTGGGCAGCGTGCCGGGTTCGGA
TGCTTCGCCTCGAGCGAGGAGAGGCGGGCCGCTCCCACCGCCGGTGGTGC
ACGGTGTGTCTCAGCCGCCGCCGTCGCGACAGTTTTTAGGCACCCCCCCG
GTACTCTTGCACTCATACGCGAAGCTACTGAACTCGCTGGTGTGCGGGAG
CTACAACTTGAGAGCGGCCTACTGTTCGTCGTGCGAAGCTGATCTCCGCA
ACATCGGGCGTGAGGGCGGTTACCTGGACATGCTGGCGGGACTCGACGGT
GGGACGCCTCGGATGATTTACGGGCAGACCGCTCTTTTCTTGCACGAGAT
TCTGGTTGAGTGCCACCTTTGAGACATGCTGGCGGGACTCGACGGTGGGA
CGCCTCGGATGATTTACGGGCAGACCGCTCTTTTCTTGCACGAGATTCTG
GTTGAGTGCCACCTTTGA
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