mRNA_L-elsbetiae_contig15909.4084.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15909.4084.1
Unique NamemRNA_L-elsbetiae_contig15909.4084.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15909.4084.1 vs. uniprot
Match: A0A836CIT0_9STRA (2',3'-cyclic-nucleotide 3'-phosphodiesterase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIT0_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 3.550e-8
Identity = 31/84 (36.90%), Postives = 50/84 (59.52%), Query Frame = 1 
Query:   10 YAGHSLWLVPGEPARSKIQTSIDRYSSEHGTVHFQAHVTLIAGVEPEGGAAEVLKKAESLALKLQPISARVEQTACMELYFKSV 261
            + GHSLWL+P +PA   +Q  +   S +  +  F+ H TL+AG+ PE    EV++K   LAL++      +++ A  +LYF+SV
Sbjct:    7 FVGHSLWLLPAQPALDALQEVVMEISVKRHSPCFKPHCTLLAGL-PESEE-EVIRKTRDLALRVAATPMTIDRVATKQLYFQSV 88
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15909.4084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CIT0_9STRA3.550e-836.902',3'-cyclic-nucleotide 3'-phosphodiesterase n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15909contigL-elsbetiae_contig15909:3164..3466 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-24_000835.1
Exons1
Model size303
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815654.477164-CDS-L-elsbetiae_contig15909:3163..34661622815654.477164-CDS-L-elsbetiae_contig15909:3163..3466Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15909 3164..3466 -
1691683017.3593326-CDS-L-elsbetiae_contig15909:3163..34661691683017.3593326-CDS-L-elsbetiae_contig15909:3163..3466Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15909 3164..3466 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15909.4084.1prot_L-elsbetiae_contig15909.4084.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15909 3164..3466 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15909.4084.1

>prot_L-elsbetiae_contig15909.4084.1 ID=prot_L-elsbetiae_contig15909.4084.1|Name=mRNA_L-elsbetiae_contig15909.4084.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
TSLYAGHSLWLVPGEPARSKIQTSIDRYSSEHGTVHFQAHVTLIAGVEPE
GGAAEVLKKAESLALKLQPISARVEQTACMELYFKSVSLHRQLISKILPP
H
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mRNA from alignment at L-elsbetiae_contig15909:3164..3466-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15909.4084.1 ID=mRNA_L-elsbetiae_contig15909.4084.1|Name=mRNA_L-elsbetiae_contig15909.4084.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=303bp|location=Sequence derived from alignment at L-elsbetiae_contig15909:3164..3466- (Laminarionema elsbetiae ELsaHSoW15)
ACTTCTTTGTACGCAGGTCATTCGCTGTGGCTCGTTCCTGGAGAACCAGC
GCGTTCGAAGATCCAAACTTCTATCGACCGCTACAGCTCGGAACACGGCA
CGGTCCACTTCCAGGCCCATGTGACTTTGATTGCTGGAGTAGAGCCGGAA
GGCGGAGCAGCGGAGGTCCTCAAGAAGGCTGAGAGCCTCGCGTTGAAGCT
GCAACCCATATCTGCGCGTGTGGAACAAACTGCGTGCATGGAGCTCTACT
TCAAGAGCGTGAGTCTTCACAGACAGCTGATTTCGAAAATCCTTCCACCC
CAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15909:3164..3466-

>mRNA_L-elsbetiae_contig15909.4084.1 ID=mRNA_L-elsbetiae_contig15909.4084.1|Name=mRNA_L-elsbetiae_contig15909.4084.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig15909:3164..3466- (Laminarionema elsbetiae ELsaHSoW15)
ACTTCTTTGTACGCAGGTCATTCGCTGTGGCTCGTTCCTGGAGAACCAGC
GCGTTCGAAGATCCAAACTTCTATCGACCGCTACAGCTCGGAACACGGCA
CGGTCCACTTCCAGGCCCATGTGACTTTGATTGCTGGAGTAGAGCCGGAA
GGCGGAGCAGCGGAGGTCCTCAAGAAGGCTGAGAGCCTCGCGTTGAAGCT
GCAACCCATATCTGCGCGTGTGGAACAAACTGCGTGCATGGAGCTCTACT
TCAAGAGCGTGAGTCTTCACAGACAGCTGATTTCGAAAATCCTTCCACCC
CACACTTCTTTGTACGCAGGTCATTCGCTGTGGCTCGTTCCTGGAGAACC
AGCGCGTTCGAAGATCCAAACTTCTATCGACCGCTACAGCTCGGAACACG
GCACGGTCCACTTCCAGGCCCATGTGACTTTGATTGCTGGAGTAGAGCCG
GAAGGCGGAGCAGCGGAGGTCCTCAAGAAGGCTGAGAGCCTCGCGTTGAA
GCTGCAACCCATATCTGCGCGTGTGGAACAAACTGCGTGCATGGAGCTCT
ACTTCAAGAGCGTGAGTCTTCACAGACAGCTGATTTCGAAAATCCTTCCA
CCCCAC
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