mRNA_L-elsbetiae_contig1590.4081.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1590.4081.1
Unique NamemRNA_L-elsbetiae_contig1590.4081.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1590.4081.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1590contigL-elsbetiae_contig1590:10792..11492 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size624
Cds size363
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1590.4081.1prot_L-elsbetiae_contig1590.4081.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1590 10841..11280 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815654.21452-UTR-L-elsbetiae_contig1590:10791..108401622815654.21452-UTR-L-elsbetiae_contig1590:10791..10840Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1590 10792..10840 +
1691683017.2706146-UTR-L-elsbetiae_contig1590:10791..108401691683017.2706146-UTR-L-elsbetiae_contig1590:10791..10840Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1590 10792..10840 +
1622815654.3044205-UTR-L-elsbetiae_contig1590:11280..114921622815654.3044205-UTR-L-elsbetiae_contig1590:11280..11492Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1590 11281..11492 +
1691683017.3087506-UTR-L-elsbetiae_contig1590:11280..114921691683017.3087506-UTR-L-elsbetiae_contig1590:11280..11492Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1590 11281..11492 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815654.225661-CDS-L-elsbetiae_contig1590:10840..109931622815654.225661-CDS-L-elsbetiae_contig1590:10840..10993Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1590 10841..10993 +
1691683017.2807286-CDS-L-elsbetiae_contig1590:10840..109931691683017.2807286-CDS-L-elsbetiae_contig1590:10840..10993Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1590 10841..10993 +
1622815654.2388082-CDS-L-elsbetiae_contig1590:11037..111041622815654.2388082-CDS-L-elsbetiae_contig1590:11037..11104Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1590 11038..11104 +
1691683017.2894933-CDS-L-elsbetiae_contig1590:11037..111041691683017.2894933-CDS-L-elsbetiae_contig1590:11037..11104Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1590 11038..11104 +
1622815654.251403-CDS-L-elsbetiae_contig1590:11137..112801622815654.251403-CDS-L-elsbetiae_contig1590:11137..11280Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1590 11138..11280 +
1691683017.298399-CDS-L-elsbetiae_contig1590:11137..112801691683017.298399-CDS-L-elsbetiae_contig1590:11137..11280Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1590 11138..11280 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1590.4081.1

>prot_L-elsbetiae_contig1590.4081.1 ID=prot_L-elsbetiae_contig1590.4081.1|Name=mRNA_L-elsbetiae_contig1590.4081.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=121bp
MRVGGPQVPAGEAGNPREAERCKQPGVEQESAQITLQPCRRRRCRCRRHR
RRRRRREVDHGAVALLKQTLILVVEENVPLGVALRPHRGTYILECCFVLH
VLCLLLCFIRARQIEVAWCI*
back to top

mRNA from alignment at L-elsbetiae_contig1590:10792..11492+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1590.4081.1 ID=mRNA_L-elsbetiae_contig1590.4081.1|Name=mRNA_L-elsbetiae_contig1590.4081.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=701bp|location=Sequence derived from alignment at L-elsbetiae_contig1590:10792..11492+ (Laminarionema elsbetiae ELsaHSoW15)
GTCTACGACGCTCTGCGAGCTATGCTTCTACAAGAGGCGCGCCGCCTTCA
TGCGGGTGGGTGGCCCGCAAGTACCTGCTGGCGAAGCCGGCAACCCCCGT
GAGGCGGAGCGCTGCAAGCAGCCCGGGGTCGAACAAGAAAGCGCCCAAAT
CACCTTGCAGCCCTGCCGGAGGCGGCGCTGCCGCTGCCGCCGCCATCGCC
GCCGCCGCCGAGAAGTAGACCATGGGGCTGCCGCTGCCGCCGCCATCGCC
GCCGCCGCCGAGAAGTAGACCATGGGGCAGTCGCGCTCCTAAAGCAAACG
CTAATCTTGGTTGTGATACCTCAACTTGCTTTTGTTTTTGCTCTGTTGGA
AGAGAACGTTCCTTTAGGTGTCGCTTTGCGTCCACATCGTGGTACATATA
TACTTGAGTGTTGCTTCGTCTTACACGTGCTCTGTTTGTTGCTCTGTTTC
ATACGGGCTCGTCAGATAGAAGTGGCTTGGTGCATTTGACTCTTTTCATT
TACGGTTTGTTCGAGATTTTTTTCGGGATGGGACGTTCATTTTTAGATTT
GAGGGAAATATGTGGTTGGTCCTTTGCAGTGTTCGGATAATGCGACGCAT
CTCTCTCATGCAGTTCAGTCGAGAGTAGCATATATATGGCTGATGTGTTA
GTTGACGTATGGTTTAAGTGGGGGAGCATTCACCAGTTGAGTGTGATGGA
C
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1590:10792..11492+

>mRNA_L-elsbetiae_contig1590.4081.1 ID=mRNA_L-elsbetiae_contig1590.4081.1|Name=mRNA_L-elsbetiae_contig1590.4081.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=726bp|location=Sequence derived from alignment at L-elsbetiae_contig1590:10792..11492+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGGTGGGTGGCCCGCAAGTACCTGCTGGCGAAGCCGGCAACCCCCG
TGAGGCGGAGCGCTGCAAGCAGCCCGGGGTCGAACAAGAAAGCGCCCAAA
TCACCTTGCAGCCCTGCCGGAGGCGGCGCTGCCGCTGCCGCCGCCATCGC
CGCATGCGGGTGGGTGGCCCGCAAGTACCTGCTGGCGAAGCCGGCAACCC
CCGTGAGGCGGAGCGCTGCAAGCAGCCCGGGGTCGAACAAGAAAGCGCCC
AAATCACCTTGCAGCCCTGCCGGAGGCGGCGCTGCCGCTGCCGCCGCCAT
CGCCGCCGCCGCCGCCGCCGAGAAGTAGACCATGGGGCAGTCGCGCTCCT
AAAGCAAACGCTAATCTTGGTTGCGCCGCCGCCGCCGAGAAGTAGACCAT
GGGGCAGTCGCGCTCCTAAAGCAAACGCTAATCTTGGTTGTGGAAGAGAA
CGTTCCTTTAGGTGTCGCTTTGCGTCCACATCGTGGTACATATATACTTG
AGTGTTGCTTCGTCTTACACGTGCTCTGTTTGTTGCTCTGTTTCATACGG
GCTCGTCAGATAGAAGTGGCTTGGTGCATTTGATGGAAGAGAACGTTCCT
TTAGGTGTCGCTTTGCGTCCACATCGTGGTACATATATACTTGAGTGTTG
CTTCGTCTTACACGTGCTCTGTTTGTTGCTCTGTTTCATACGGGCTCGTC
AGATAGAAGTGGCTTGGTGCATTTGA
back to top