mRNA_L-elsbetiae_contig159.4077.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig159.4077.1
Unique NamemRNA_L-elsbetiae_contig159.4077.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig159.4077.1 vs. uniprot
Match: A0A6H5JMI1_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMI1_9PHAE)

HSP 1 Score: 305 bits (781), Expect = 1.450e-103
Identity = 157/194 (80.93%), Postives = 169/194 (87.11%), Query Frame = 1
Query:    1 MAFFGLTALGPQNCFQVSLLDFSYLDVFTELDTEKAFNRVDHQQRGFLHPEQVEEFLAELYHGKPKACDLARFTAKMKTSSVTVEGDEGSRVTLGDIQSAMAQLKKEVEEETNQAKWHKGSGSDVNSNQSFRETVRRHEYIARGPRERYARTVTAVQEHGWHDQLEINKQVVHGKKSCAETVYASELVKSGVYF 582
            MAFFGLTALGPQN FQVSLLDFSYLDVFT LD EKAFN VD ++RG +H +QVE FL ELYHGKPKACDLARF  K  +     EG E +RVTL DIQS M QL+KEVEEETNQAKWHKGSGSD++SNQ+FRE VRRHEYIARGPRERYARTVTAVQEHGW DQL+INKQ+VHGKKSCAETVYASELVKSGVYF
Sbjct:    1 MAFFGLTALGPQNSFQVSLLDFSYLDVFTALDIEKAFNIVDQEKRGHIHSDQVEAFLTELYHGKPKACDLARFMEKKSS----FEGQE-NRVTLDDIQSTMTQLRKEVEEETNQAKWHKGSGSDLSSNQNFREKVRRHEYIARGPRERYARTVTAVQEHGWQDQLDINKQMVHGKKSCAETVYASELVKSGVYF 189          
BLAST of mRNA_L-elsbetiae_contig159.4077.1 vs. uniprot
Match: D8LF25_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF25_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 2.400e-43
Identity = 79/108 (73.15%), Postives = 88/108 (81.48%), Query Frame = 1
Query:    1 MAFFGLTALGPQNCFQVSLLDFSYLDVFTELDTEKAFNRVDHQQRGFLHPEQVEEFLAELYHGKPKACDLARFTAKMKTSSVTVEGDEGSRVTLGDIQSAMAQLKKEV 324
            MAFFGLTALGPQN FQV+LLDFSYLDVFT LD EKAFN VDHQ+RG++H +QVE FL ELYHGKP ACDLARF  K K+    +EG E +RVTL DIQS MAQL+KE 
Sbjct:    1 MAFFGLTALGPQNSFQVALLDFSYLDVFTALDMEKAFNIVDHQKRGYIHSDQVEAFLTELYHGKPIACDLARFMEKKKS----LEGQE-NRVTLDDIQSTMAQLRKEA 103          
BLAST of mRNA_L-elsbetiae_contig159.4077.1 vs. uniprot
Match: A0A7S2V2Y5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2Y5_9STRA)

HSP 1 Score: 135 bits (340), Expect = 1.100e-36
Identity = 74/194 (38.14%), Postives = 117/194 (60.31%), Query Frame = 1
Query:    1 MAFFGLTALGPQNCFQVSLLDFSYLDVFTELDTEKAFNRVDHQQRGFLHPEQVEEFLAELYHGKPKACDLARFTAKMKTSSVTVEGDEGSRVTLGDIQSAMAQLKKEVEEETNQAKWHKGSGSDVNSNQSFRETVRRHEYIARGPRERYARTVTAVQEHGWHDQLEINKQVVHGKKSCAETVYASELVKSGVYF 582
            MAFFGLT+LGPQ+ F  SLLD   L++F++ D E AF +VD    GF+   ++E  L E+Y G     ++  F AK  T+       +  +++  +  S + +L++EVEE+    +   G  S  +SN  +RE + +H  +  GP ++Y + +TA QE+GW  + E+++    GKKSC ET+YA+ELVKSG+Y+
Sbjct:    1 MAFFGLTSLGPQDSFATSLLDTINLNIFSDEDFETAFKKVDRDGSGFIERNEIEALLREVYRGDCPRNEVEMFMAKFDTN-------QDGKISWEEFVSTLCELRQEVEEQEKAKEQRVGPASQFSSNLEYRENMHKHTRLNTGPTDKYNQPMTASQEYGWQHK-EVDQAPRAGKKSCEETLYAAELVKSGMYY 186          
BLAST of mRNA_L-elsbetiae_contig159.4077.1 vs. uniprot
Match: A0A836CBM4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBM4_9STRA)

HSP 1 Score: 103 bits (256), Expect = 4.590e-24
Identity = 73/196 (37.24%), Postives = 99/196 (50.51%), Query Frame = 1
Query:    1 MAFFGLTALGPQNCFQVSLLDFSYLDVFTELDTEKAFNRVDHQQRGFLHPEQVEEFLAELYHGKPKACDLARFTAKMKTSSVTVEGDEGSRVTLGDIQSAMAQLKKEVEEETNQAKWHKGSGSDVNSNQSFRETVRRHEYIARGPRERYARTVTAVQEHGWHDQL--EINKQVVHGKKSCAETVYASELVKSGVYF 582
            MAFFGLTALGPQN F  SL   S L +F++ D   AF  V     G L  + V   L  LY G     D ARF AK   +++   G     +    I  A+ QL+ ++ +      W   +     SN+ +R  VRRH  +   P+E+YA  + A Q+ GW  +   E      H KKSC ET +A+E+VKSG+YF
Sbjct:    1 MAFFGLTALGPQNTFACSLKGASDLQIFSDEDWRLAFEAV--AVEGALRRDDVTALLEALYRGPAPVDDAARF-AKAAEAAL---GSGWDALACAQILRAVQQLRADMAQLQADEAWRARASCGTTSNEEYRNRVRRHCGLHLAPQEQYAVPLKAAQDLGWQQRPPGEGAAAGAHSKKSCEETKFAAEMVKSGMYF 190          
BLAST of mRNA_L-elsbetiae_contig159.4077.1 vs. uniprot
Match: A0A7S2TRH2_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TRH2_9EUKA)

HSP 1 Score: 95.9 bits (237), Expect = 3.160e-21
Identity = 64/196 (32.65%), Postives = 101/196 (51.53%), Query Frame = 1
Query:    4 AFFGLTALGPQNCFQVSLLDFSYLDVFTELDTEKAFNRVDHQQRGFLHPEQVEEFLAELYHGKPKACDLARFTAKMKTSSVTVEGDEGSRVTLGDIQSAMAQLKKEVEEETNQAKWHKGSGSDVNSNQSFRETVRRHEYIARGPRERYARTVTAVQEHGWH--DQLEINKQVVH-GKKSCAETVYASELVKSGVYF 582
            +FFGL ALGP + F  +LL    +  FTE + EKAF  +D    G++  ++V   L  LY  K    +  +   K        + ++  ++T  + + A+ +LK +V++ET          +  NS +S      +H+   RGP++ YA  +T  QE GW    + E NK   H  K SC ETV+ASE++KSG+Y+
Sbjct:    8 SFFGLVALGPNDPFSHNLLKNMNMSKFTEEEFEKAFKSIDKDGNGYISIDEVRYLLTSLYSMKNPPEEEVKMFVKF------FDKNKDGKITYEEFKEAVPKLKGKVQKETKV-----NHATTTNSVESLYRVRNKHKRNCRGPQQLYAAPMTTAQEVGWQTASKAEKNKNDPHMPKNSCEETVFASEMIKSGIYY 192          
BLAST of mRNA_L-elsbetiae_contig159.4077.1 vs. uniprot
Match: A0A7S4DF25_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DF25_9EUKA)

HSP 1 Score: 90.9 bits (224), Expect = 3.820e-19
Identity = 62/198 (31.31%), Postives = 100/198 (50.51%), Query Frame = 1
Query:    4 AFFGLTALGPQNCFQVSLLDFSYLDVFTELDTEKAFNRVDHQQRGFLHPEQVEEFLAELYHGKPKACDLARFTAKMKTSSVTVEGDEGSRVTLGDIQSAMAQLKKEVEEET--NQAKWHKGSGSDVNSNQSFRETVRRHEYIARGPRERYARTVTAVQEHGWHDQLEINKQVVHG---KKSCAETVYASELVKSGVYF 582
            +FFGL ALGP + F  +LL    +  FTE + EKAF  +D    G++  ++V   L  LY  K    +  +   ++       + ++  ++T  + ++A+ +LK++V +ET  N AK         NS +S      +H    R P++ YA  +T  QE GW    +  K        K SC ETV+ASE++KSG+Y+
Sbjct:   25 SFFGLVALGPNDPFSHNLLKNMNMSKFTEEEFEKAFKSIDKDGNGYISIDEVRYLLTSLYSMKSPPEEEVKMFVQL------FDANKDGKITFEEFKNAVPKLKEKVRKETKMNHAK-------TTNSAKSLHRVRNKHVRDCRAPQQLYATPMTTAQEVGWQTASKAEKNENDPQMPKSSCDETVFASEMIKSGIYY 209          
BLAST of mRNA_L-elsbetiae_contig159.4077.1 vs. uniprot
Match: A0A7S3GWS7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GWS7_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.270e-13
Identity = 51/194 (26.29%), Postives = 91/194 (46.91%), Query Frame = 1
Query:    1 MAFFGLTALGPQNCFQVSLLDFSYLDVFTELDTEKAFNRVDHQQRGFLHPEQVEEFLAELYHGKPKACDLARFTAKMKTSSVTVEGDEGSRVTLGDIQSAMAQLKKEVEEETNQAKWHKGSGSDVNSNQSFRETVRRHEYIARGPRERYARTVTAVQEHGWHDQLEINKQVVHGKKSCAETVYASELVKSGVYF 582
            MAFFGLTALGPQN F+V+   F Y+ VF E D + A+ +V+      +H  ++      L+HG   A +    +   +        +    ++L      M +L++E +E++   +       + NS       +R++  +    + +    +T  QE+GW  Q    K    G+     T +A+EL+K+G+Y+
Sbjct:    3 MAFFGLTALGPQNAFEVNSTTFRYIQVFDEQDFKDAWIKVNGPDALHVHRPRLPLVFKALFHGPVPANEQGPISEAFENGVF----ETPETISLDSYLKIMVRLREEADEQSRAREGRPNPNCEFNSTSEMSLAIRKNAAMKHELQTKLTAPLTGTQEYGWSKQD--LKAPTAGRGGSDITKFAAELIKNGIYY 190          
BLAST of mRNA_L-elsbetiae_contig159.4077.1 vs. uniprot
Match: A0A482S0M9_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S0M9_9ARCH)

HSP 1 Score: 56.6 bits (135), Expect = 9.490e-7
Identity = 45/159 (28.30%), Postives = 75/159 (47.17%), Query Frame = 1
Query:    1 MAFFGLTALGPQNCFQVSLLDFSYLDVFTELDTEKAFNRVDHQQRGFLHPEQVEEFLAELYHGKPKACDLARFTAKMKTSSVTVEGDEGS-RVTLGDIQSAMAQLKKEVEEETNQAKWHKGSGSDVNSNQSFRETVRRHEYIARGPRERYARTVTAVQE 474
            MAFFGLTALGPQN F  + +   YL +F E D   A+ + +   R F    ++   +  L+HG     D+       ++       D+GS  V        +A L+K+ E+  +          +  S+QSFRE++R++  I +  + + +  +TA  E
Sbjct:    1 MAFFGLTALGPQNAFAANAITRRYLQIFDEQDFHDAWKKAN-GDRTFCAKNKIPAVMEALFHGPVPDNDMNPVVEAFESV------DDGSGMVAFATFMRIIAHLQKDAEKAEHVHDGKPRPECEFISSQSFRESLRKNAAIKQNFQNKLSAPLTATME 152          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig159.4077.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JMI1_9PHAE1.450e-10380.93EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
D8LF25_ECTSI2.400e-4373.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2V2Y5_9STRA1.100e-3638.14Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A836CBM4_9STRA4.590e-2437.24Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2TRH2_9EUKA3.160e-2132.65Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A7S4DF25_9EUKA3.820e-1931.31Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A7S3GWS7_9STRA1.270e-1326.29Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A482S0M9_9ARCH9.490e-728.30Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig159contigL-elsbetiae_contig159:28941..31286 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.0
Seed ortholog evalue2.6e-18
Seed eggNOG ortholog227086.JGI_V11_86502
Hectar predicted targeting categoryother localisation
EggNOG OGs2E0YM@1,2S8BS@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_006460.1
Exons6
Model size610
Cds size585
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815653.6759052-UTR-L-elsbetiae_contig159:28940..289651622815653.6759052-UTR-L-elsbetiae_contig159:28940..28965Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig159 28941..28965 -
1691683016.8971672-UTR-L-elsbetiae_contig159:28940..289651691683016.8971672-UTR-L-elsbetiae_contig159:28940..28965Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig159 28941..28965 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815653.6912603-CDS-L-elsbetiae_contig159:28965..290401622815653.6912603-CDS-L-elsbetiae_contig159:28965..29040Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig159 28966..29040 -
1691683016.907697-CDS-L-elsbetiae_contig159:28965..290401691683016.907697-CDS-L-elsbetiae_contig159:28965..29040Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig159 28966..29040 -
1622815653.701386-CDS-L-elsbetiae_contig159:29159..292671622815653.701386-CDS-L-elsbetiae_contig159:29159..29267Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig159 29160..29267 -
1691683016.9173536-CDS-L-elsbetiae_contig159:29159..292671691683016.9173536-CDS-L-elsbetiae_contig159:29159..29267Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig159 29160..29267 -
1622815653.7154584-CDS-L-elsbetiae_contig159:29515..295961622815653.7154584-CDS-L-elsbetiae_contig159:29515..29596Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig159 29516..29596 -
1691683016.9278922-CDS-L-elsbetiae_contig159:29515..295961691683016.9278922-CDS-L-elsbetiae_contig159:29515..29596Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig159 29516..29596 -
1622815653.7254314-CDS-L-elsbetiae_contig159:30460..306251622815653.7254314-CDS-L-elsbetiae_contig159:30460..30625Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig159 30461..30625 -
1691683016.9366715-CDS-L-elsbetiae_contig159:30460..306251691683016.9366715-CDS-L-elsbetiae_contig159:30460..30625Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig159 30461..30625 -
1622815653.7387362-CDS-L-elsbetiae_contig159:30955..310241622815653.7387362-CDS-L-elsbetiae_contig159:30955..31024Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig159 30956..31024 -
1691683016.9454691-CDS-L-elsbetiae_contig159:30955..310241691683016.9454691-CDS-L-elsbetiae_contig159:30955..31024Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig159 30956..31024 -
1622815653.7513156-CDS-L-elsbetiae_contig159:31199..312861622815653.7513156-CDS-L-elsbetiae_contig159:31199..31286Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig159 31200..31286 -
1691683016.9542873-CDS-L-elsbetiae_contig159:31199..312861691683016.9542873-CDS-L-elsbetiae_contig159:31199..31286Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig159 31200..31286 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig159.4077.1prot_L-elsbetiae_contig159.4077.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig159 28966..31286 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig159.4077.1

>prot_L-elsbetiae_contig159.4077.1 ID=prot_L-elsbetiae_contig159.4077.1|Name=mRNA_L-elsbetiae_contig159.4077.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=195bp
MAFFGLTALGPQNCFQVSLLDFSYLDVFTELDTEKAFNRVDHQQRGFLHP
EQVEEFLAELYHGKPKACDLARFTAKMKTSSVTVEGDEGSRVTLGDIQSA
MAQLKKEVEEETNQAKWHKGSGSDVNSNQSFRETVRRHEYIARGPRERYA
RTVTAVQEHGWHDQLEINKQVVHGKKSCAETVYASELVKSGVYF*
back to top

mRNA from alignment at L-elsbetiae_contig159:28941..31286-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig159.4077.1 ID=mRNA_L-elsbetiae_contig159.4077.1|Name=mRNA_L-elsbetiae_contig159.4077.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2346bp|location=Sequence derived from alignment at L-elsbetiae_contig159:28941..31286- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTTTCTTCGGCTTGACAGCTCTAGGCCCGCAGAACTGCTTCCAGGT GTCCCTTCTGGACTTCAGCTACCTGGATGTATTTACGGTCGGTGTCGAAA CAAGTCGGTGTGTAAAGTTTTTATCTATCTATCTAGTCTAGACTACATAC ACACAACTGCAGAGTACGCCGCTCACTTTGCACACATATGCATTTACCTC CGAGTTGTAGATCAACAGTCCAACTTTTTGTCGGTGCTTGCCCTGGTCCT CTACACCACCAGGAATTGGACACGGAGAAGGCGTTCAACCGCGTTGACCA CCAGCAGCGAGGATTTTTACACCCCGAGCAGGTAGGCCCGGCGCACAAAC TACAGGCGCAATAGATTCGAGGTGTGCCTGCTCCACCCGGTCATTTAGTG CTTTGGATGTATAATCCGGTGTTTTGGGCGTTTGAATTTGGAACGCAATA GCACCCGGCGAACAACCTTCCCACGCGAAGTACTCCGGAGTATATGGTAG GCGCGGGCGTTCGACAAACAGCCCAGGTTCAAAGTTCACGACTTTCTGCA TATTTGCCGTGAGACGGTGTTTGTAGATGGAGGCTCTCGAGCTTCCAACG TGGATTTGCTGCCCAGTGGTATGTTCTGAGGCCTGCCTGCGCGTGGATGA AAATGCGCAAGGTTGAAGAGTTTCTGGCCGAGTTATACCACGGGAAGCCG AAAGCTTGCGACCTGGCTAGGTTCACAGCAAAAATGAAGACCTCCTCAGT GACGGTGGAAGGAGATGAAGGAAGCCGTGTGACGCTGGGCGATATTCAGT CTGCGATGGCCCAGTTAAAGAAGGAGGTGGGAAAACATACTACACGTCCC AGGCCGTTGTATGTACAAAAATGTTCGTACGAAAGAAACATTCGAAAATT GAACATTTGACAAAATAAGTTGATGGCACCATGCGTCATCGAGTTTTGTC TCACGCTTGACCATCCTCTGATAGGTTGCACTAAGGTCTAGAAAGCTGTA TTGTAGTGACGAATCATGTCCTCACAGACGCTTTCCTAATCTGACCGACT CTCGAAAAACTGGAAACCATTGCGCCGACGAGGTGAGCCGCATTCGCTTG GCGCAGGAAACAAAGACATTGGGACATTTATCTACATTTTATCTACTAAA TACGTTTTAATTTTACACGAATCTTAGTGGGAGCCACACTGTGCCCCCAG AGCTCGACGTCGTGTCTGGCTAGATCTCTGCAAAGGTGCCGTGCAAAGCT ATTGTGCTAAACATAGTCTATACACATGTACACACCAAAAAACGTTTTTG CCGCTCAATACTAGATGTTTGTCAGATGTACAGCACGTGATCTAACCCCA TTTATTCTGCAAACAGACATACGAAGTACTCTACCTTTGATTTTGTACCG GCGAGACACAAGACCCCTCGGGGTTCAGTTTAGTACCACCGGGCGCGTCT GTATTATATATATTTTTTGCTTTTCTTCCGCGACGCCGAGTGTGCCTTGT TTTGTGACCACGGGCCCCCAAGGATATTTTGGACTAGCGAGCTAATATGA CAAACAACAACACATACAACGAAGTGTGGATTTATCTTTCGTGGCACTCA TTTTTGATACGTTTGAGAAAATACTATCTATGATCAACTGGTTCTCCCTG CTGACGGTATTGATTGTGACGATGCTTTGGATCGGGACAGGTGGAGGAAG AAACAAATCAGGCCAAGTGGCACAAGGGCTCGGGTTCAGACGTCAACTCA AACCAATCCTTCCGAGAAACGGTGCGTTGGTGGGCAATACGACAGCTTCA CGTCGGGCGATTCACTATCTGCACGAAGCATTGACTTTGACAATGTACGC AGCTTTAAGTATGTGCGGCTACATGATCATAAAAAATGCATTTTGAAGAC AGCTTTTTCGAAGCACCAAAAAAAGTGGTCTTGTACGATTCAGTCCAGAC CCAAAGAAAACACCTTTTTACATGCACACTGAAAGTACACTCCACTACAT ATGCGCTACATCTGACAAGGTGCGGCGACACGAGTATATTGCAAGGGGGC CGCGTGAACGGTACGCCAGAACGGTGACCGCAGTTCAAGAACACGGCTGG CATGACCAGCTAGAGATCAACAAGCAGGTACAGCCCCTAAACATACCATA TGGTGTTCGTTTGAACGAAATTGCGCTGGATCGGATAAATCTGTTTTCTT CCACCTAATATATATTCCTGATGTTGTGCTATGCTCGATGAAACAGGTCG TTCATGGCAAGAAGAGCTGTGCTGAGACCGTGTATGCTTCCGAGCTGGTG AAAAGTGGAGTGTATTTTTGAGCTGCTGGTGTGGGGGCGCAACATG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig159:28941..31286-

>mRNA_L-elsbetiae_contig159.4077.1 ID=mRNA_L-elsbetiae_contig159.4077.1|Name=mRNA_L-elsbetiae_contig159.4077.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1170bp|location=Sequence derived from alignment at L-elsbetiae_contig159:28941..31286- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTTTCTTCGGCTTGACAGCTCTAGGCCCGCAGAACTGCTTCCAGGT
GTCCCTTCTGGACTTCAGCTACCTGGATGTATTTACGATGGCTTTCTTCG
GCTTGACAGCTCTAGGCCCGCAGAACTGCTTCCAGGTGTCCCTTCTGGAC
TTCAGCTACCTGGATGTATTTACGGAATTGGACACGGAGAAGGCGTTCAA
CCGCGTTGACCACCAGCAGCGAGGATTTTTACACCCCGAGCAGGAATTGG
ACACGGAGAAGGCGTTCAACCGCGTTGACCACCAGCAGCGAGGATTTTTA
CACCCCGAGCAGGTTGAAGAGTTTCTGGCCGAGTTATACCACGGGAAGCC
GAAAGCTTGCGACCTGGCTAGGTTCACAGCAAAAATGAAGACCTCCTCAG
TGACGGTGGAAGGAGATGAAGGAAGCCGTGTGACGCTGGGCGATATTCAG
TCTGCGATGGCCCAGTTAAAGAAGGAGGTTGAAGAGTTTCTGGCCGAGTT
ATACCACGGGAAGCCGAAAGCTTGCGACCTGGCTAGGTTCACAGCAAAAA
TGAAGACCTCCTCAGTGACGGTGGAAGGAGATGAAGGAAGCCGTGTGACG
CTGGGCGATATTCAGTCTGCGATGGCCCAGTTAAAGAAGGAGGTGGAGGA
AGAAACAAATCAGGCCAAGTGGCACAAGGGCTCGGGTTCAGACGTCAACT
CAAACCAATCCTTCCGAGAAACGGTGGAGGAAGAAACAAATCAGGCCAAG
TGGCACAAGGGCTCGGGTTCAGACGTCAACTCAAACCAATCCTTCCGAGA
AACGGTGCGGCGACACGAGTATATTGCAAGGGGGCCGCGTGAACGGTACG
CCAGAACGGTGACCGCAGTTCAAGAACACGGCTGGCATGACCAGCTAGAG
ATCAACAAGCAGGTGCGGCGACACGAGTATATTGCAAGGGGGCCGCGTGA
ACGGTACGCCAGAACGGTGACCGCAGTTCAAGAACACGGCTGGCATGACC
AGCTAGAGATCAACAAGCAGGTCGTTCATGGCAAGAAGAGCTGTGCTGAG
ACCGTGTATGCTTCCGAGCTGGTGAAAAGTGGAGTGTATTTTTGAGTCGT
TCATGGCAAGAAGAGCTGTGCTGAGACCGTGTATGCTTCCGAGCTGGTGA
AAAGTGGAGTGTATTTTTGA
back to top