mRNA_L-elsbetiae_contig15897.4073.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15897.4073.1
Unique NamemRNA_L-elsbetiae_contig15897.4073.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15897.4073.1 vs. uniprot
Match: D8LSN9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSN9_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 8.090e-36
Identity = 75/106 (70.75%), Postives = 84/106 (79.25%), Query Frame = 1 
Query:  676 IALWLDMRTAVLPAAQTLKGLYDDLRRREEALGRGPGDPDWALGRVPDPVGALLYAAQPAERAAEEMAALGG-GGALPCFRLSGAD-EGKILDVSSGDVAGIGLDP 987
            +ALWLDMRTAVLPAAQTLK LY +LR+REEALGR P D DW L RVP+PVGALLYAA+P ERAAEEM ALG    ALPCFRL G D    ++DVSSG V G+ +DP
Sbjct:  105 VALWLDMRTAVLPAAQTLKTLYGELRQREEALGRSPEDTDWTLSRVPNPVGALLYAAEPEERAAEEMVALGETAAALPCFRLGGTDGTAVVVDVSSGHVVGVRVDP 210
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15897.4073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSN9_ECTSI8.090e-3670.75Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15897contigL-elsbetiae_contig15897:2365..3984 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_003160.1
Exons2
Model size1082
Cds size1080
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815652.8196244-CDS-L-elsbetiae_contig15897:2364..24391622815652.8196244-CDS-L-elsbetiae_contig15897:2364..2439Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15897 2365..2439 +
1691683016.2670555-CDS-L-elsbetiae_contig15897:2364..24391691683016.2670555-CDS-L-elsbetiae_contig15897:2364..2439Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15897 2365..2439 +
1622815652.8323648-CDS-L-elsbetiae_contig15897:2979..39841622815652.8323648-CDS-L-elsbetiae_contig15897:2979..3984Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15897 2980..3984 +
1691683016.2776673-CDS-L-elsbetiae_contig15897:2979..39841691683016.2776673-CDS-L-elsbetiae_contig15897:2979..3984Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15897 2980..3984 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15897.4073.1prot_L-elsbetiae_contig15897.4073.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15897 2365..3984 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15897.4073.1

>prot_L-elsbetiae_contig15897.4073.1 ID=prot_L-elsbetiae_contig15897.4073.1|Name=mRNA_L-elsbetiae_contig15897.4073.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=360bp
SRSRCSSFVALNLVVCVQQSVFDNQKPENPFRLPGREAGGVPPQTHASMI
VSKAWWIAVAALVVSEARASSPGRRPPANLRRAHCSAPLPPSSSASSSPP
AGPSRKATAPAFLPPLGPLSLFSPPAPTTRLPGSSSSSSSSSSLATRAPS
CCRHRRLRRAKTRPPPPSPPPSRAGARQDRRSSALFMTAGGTTLPSDDAG
NDSDSLPPGQAEATGGGSGGGGGGGIALWLDMRTAVLPAAQTLKGLYDDL
RRREEALGRGPGDPDWALGRVPDPVGALLYAAQPAERAAEEMAALGGGGA
LPCFRLSGADEGKILDVSSGDVAGIGLDPASAGGGGIGGSPAVEIVAAAQ
RTGGSGSGSG
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mRNA from alignment at L-elsbetiae_contig15897:2365..3984+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15897.4073.1 ID=mRNA_L-elsbetiae_contig15897.4073.1|Name=mRNA_L-elsbetiae_contig15897.4073.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1620bp|location=Sequence derived from alignment at L-elsbetiae_contig15897:2365..3984+ (Laminarionema elsbetiae ELsaHSoW15)
TCTCGCTCGCGGTGCAGCTCTTTCGTCGCTCTCAACCTGGTGGTGTGTGT
TCAACAGTCGGTCTTCGACAATCAGGCAAGTATCCGTCACGGCAGTAATG
GTAAAACACAAAACACTCAGAAAAACAAAAAACTATTTTTCTCTTGACCA
CGGGGACCCAACAGAGAAACATTCAAAAACTCGCATCATGAAAGAAGAAA
CCCTTGTTTCTATGTAGCGGACGACAGCTGCAATGTTTGGTTGCTGTCAC
CAGCTGGTTGTCACCAAGAACGAGGATCGCTCGCAAAGCGACTCCGCAGC
TGGCGGCGCCTGTCGGGATGCTATTCATTATCGCGATGCCATTGCCGTCA
GTGATGGTCCATCAGCCGACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCAACCCCCCCC
CCCCCCCCCACGGNNNNNNNNCCCCCGCGGCGGGCGGCGCCGGGCGGGGT
GCTTTTTTTTTCCCCGCGCCCCTTGCCGCCGGGGTGGGCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCGGCGCTCTCCCCAACCGCTTGTGCCTGCTCCG
CTGCTCCGTCACCAGAAACCAGAGAACCCGTTTCGTCTACCAGGCAGAGA
GGCCGGCGGGGTACCTCCCCAAACCCACGCGAGCATGATAGTGTCGAAAG
CGTGGTGGATCGCCGTCGCCGCTCTGGTGGTATCCGAGGCGAGGGCGTCG
TCGCCCGGCCGCCGTCCTCCTGCCAATCTCCGTCGAGCACACTGCTCCGC
GCCATTGCCACCGTCATCATCAGCATCATCATCACCACCAGCCGGTCCGT
CACGAAAGGCAACGGCGCCCGCCTTTCTCCCGCCTCTAGGCCCGCTGTCC
TTGTTCTCCCCGCCTGCCCCGACCACCCGGCTGCCTGGCAGCAGCAGCAG
CAGCAGCAGCAGCAGTAGCCTGGCAACACGAGCGCCTTCCTGCTGCCGAC
ATCGCCGTCTCCGCCGAGCGAAAACGCGGCCACCACCACCGTCACCGCCC
CCTTCCCGCGCCGGGGCGCGACAGGACCGGAGATCCTCCGCGCTCTTCAT
GACGGCGGGCGGAACGACCCTCCCCTCCGACGACGCGGGAAACGACAGCG
ACAGCCTCCCGCCGGGGCAGGCGGAGGCGACGGGCGGCGGCAGCGGCGGG
GGCGGCGGCGGCGGTATCGCCCTTTGGCTGGACATGCGCACCGCGGTACT
GCCAGCGGCCCAAACCCTCAAGGGCCTGTACGACGACCTCCGGCGGAGGG
AGGAAGCGCTCGGCCGAGGCCCGGGAGACCCGGACTGGGCGCTGGGCCGC
GTGCCCGACCCGGTCGGGGCGCTGCTCTACGCCGCGCAGCCGGCGGAGAG
GGCGGCGGAAGAGATGGCCGCGCTCGGCGGCGGCGGGGCGCTCCCGTGCT
TCCGGTTGAGCGGCGCGGATGAGGGAAAAATCTTAGACGTGTCGAGCGGG
GACGTCGCGGGAATCGGGCTCGATCCCGCCTCCGCCGGCGGCGGCGGGAT
CGGGGGCAGCCCGGCGGTGGAGATCGTCGCGGCGGCCCAACGAACCGGCG
GCAGCGGCAGCGGCAGCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15897:2365..3984+

>mRNA_L-elsbetiae_contig15897.4073.1 ID=mRNA_L-elsbetiae_contig15897.4073.1|Name=mRNA_L-elsbetiae_contig15897.4073.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2160bp|location=Sequence derived from alignment at L-elsbetiae_contig15897:2365..3984+ (Laminarionema elsbetiae ELsaHSoW15)
TCTCGCTCGCGGTGCAGCTCTTTCGTCGCTCTCAACCTGGTGGTGTGTGT
TCAACAGTCGGTCTTCGACAATCAGTCTCGCTCGCGGTGCAGCTCTTTCG
TCGCTCTCAACCTGGTGGTGTGTGTTCAACAGTCGGTCTTCGACAATCAG
AAACCAGAGAACCCGTTTCGTCTACCAGGCAGAGAGGCCGGCGGGGTACC
TCCCCAAACCCACGCGAGCATGATAGTGTCGAAAGCGTGGTGGATCGCCG
TCGCCGCTCTGGTGGTATCCGAGGCGAGGGCGTCGTCGCCCGGCCGCCGT
CCTCCTGCCAATCTCCGTCGAGCACACTGCTCCGCGCCATTGCCACCGTC
ATCATCAGCATCATCATCACCACCAGCCGGTCCGTCACGAAAGGCAACGG
CGCCCGCCTTTCTCCCGCCTCTAGGCCCGCTGTCCTTGTTCTCCCCGCCT
GCCCCGACCACCCGGCTGCCTGGCAGCAGCAGCAGCAGCAGCAGCAGCAG
TAGCCTGGCAACACGAGCGCCTTCCTGCTGCCGACATCGCCGTCTCCGCC
GAGCGAAAACGCGGCCACCACCACCGTCACCGCCCCCTTCCCGCGCCGGG
GCGCGACAGGACCGGAGATCCTCCGCGCTCTTCATGACGGCGGGCGGAAC
GACCCTCCCCTCCGACGACGCGGGAAACGACAGCGACAGCCTCCCGCCGG
GGCAGGCGGAGGCGACGGGCGGCGGCAGCGGCGGGGGCGGCGGCGGCGGT
ATCGCCCTTTGGCTGGACATGCGCACCGCGGTACTGCCAGCGGCCCAAAC
CCTCAAGGGCCTGTACGACGACCTCCGGCGGAGGGAGGAAGCGCTCGGCC
GAGGCCCGGGAGACCCGGACTGGGCGCTGGGCCGCGTGCCCGACCCGGTC
GGGGCGCTGCTCTACGCCGCGCAGCCGGCGGAGAGGGCGGCGGAAGAGAT
GGCCGCGCTCGGCGGCGGCGGGGCGCTCCCGTGCTTCCGGTTGAGCGGCG
CGGATGAGGGAAAAATCTTAGACGTGTCGAGCGGGGACGTCGCGGGAATC
GGGCTCGATCCCGCCTCCGCCGGCGGCGGCGGGATCGGGGGCAGCCCGGC
GGTGGAGATCGTCGCGGCGGCCCAACGAACCGGCGGCAGCGGCAGCGGCA
GCGGCAAACCAGAGAACCCGTTTCGTCTACCAGGCAGAGAGGCCGGCGGG
GTACCTCCCCAAACCCACGCGAGCATGATAGTGTCGAAAGCGTGGTGGAT
CGCCGTCGCCGCTCTGGTGGTATCCGAGGCGAGGGCGTCGTCGCCCGGCC
GCCGTCCTCCTGCCAATCTCCGTCGAGCACACTGCTCCGCGCCATTGCCA
CCGTCATCATCAGCATCATCATCACCACCAGCCGGTCCGTCACGAAAGGC
AACGGCGCCCGCCTTTCTCCCGCCTCTAGGCCCGCTGTCCTTGTTCTCCC
CGCCTGCCCCGACCACCCGGCTGCCTGGCAGCAGCAGCAGCAGCAGCAGC
AGCAGTAGCCTGGCAACACGAGCGCCTTCCTGCTGCCGACATCGCCGTCT
CCGCCGAGCGAAAACGCGGCCACCACCACCGTCACCGCCCCCTTCCCGCG
CCGGGGCGCGACAGGACCGGAGATCCTCCGCGCTCTTCATGACGGCGGGC
GGAACGACCCTCCCCTCCGACGACGCGGGAAACGACAGCGACAGCCTCCC
GCCGGGGCAGGCGGAGGCGACGGGCGGCGGCAGCGGCGGGGGCGGCGGCG
GCGGTATCGCCCTTTGGCTGGACATGCGCACCGCGGTACTGCCAGCGGCC
CAAACCCTCAAGGGCCTGTACGACGACCTCCGGCGGAGGGAGGAAGCGCT
CGGCCGAGGCCCGGGAGACCCGGACTGGGCGCTGGGCCGCGTGCCCGACC
CGGTCGGGGCGCTGCTCTACGCCGCGCAGCCGGCGGAGAGGGCGGCGGAA
GAGATGGCCGCGCTCGGCGGCGGCGGGGCGCTCCCGTGCTTCCGGTTGAG
CGGCGCGGATGAGGGAAAAATCTTAGACGTGTCGAGCGGGGACGTCGCGG
GAATCGGGCTCGATCCCGCCTCCGCCGGCGGCGGCGGGATCGGGGGCAGC
CCGGCGGTGGAGATCGTCGCGGCGGCCCAACGAACCGGCGGCAGCGGCAG
CGGCAGCGGC
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