mRNA_L-elsbetiae_contig15860.4063.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15860.4063.1
Unique NamemRNA_L-elsbetiae_contig15860.4063.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15860.4063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15860contigL-elsbetiae_contig15860:358..2929 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size403
Cds size402
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15860.4063.1prot_L-elsbetiae_contig15860.4063.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15860 358..2929 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815651.5815434-CDS-L-elsbetiae_contig15860:357..3911622815651.5815434-CDS-L-elsbetiae_contig15860:357..391Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15860 358..391 +
1691683015.3652275-CDS-L-elsbetiae_contig15860:357..3911691683015.3652275-CDS-L-elsbetiae_contig15860:357..391Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15860 358..391 +
1622815651.5939825-CDS-L-elsbetiae_contig15860:1046..10941622815651.5939825-CDS-L-elsbetiae_contig15860:1046..1094Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15860 1047..1094 +
1691683015.3750446-CDS-L-elsbetiae_contig15860:1046..10941691683015.3750446-CDS-L-elsbetiae_contig15860:1046..1094Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15860 1047..1094 +
1622815651.6044052-CDS-L-elsbetiae_contig15860:1628..18651622815651.6044052-CDS-L-elsbetiae_contig15860:1628..1865Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15860 1629..1865 +
1691683015.3847578-CDS-L-elsbetiae_contig15860:1628..18651691683015.3847578-CDS-L-elsbetiae_contig15860:1628..1865Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15860 1629..1865 +
1622815651.6162024-CDS-L-elsbetiae_contig15860:2846..29291622815651.6162024-CDS-L-elsbetiae_contig15860:2846..2929Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15860 2847..2929 +
1691683015.393368-CDS-L-elsbetiae_contig15860:2846..29291691683015.393368-CDS-L-elsbetiae_contig15860:2846..2929Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15860 2847..2929 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15860.4063.1

>prot_L-elsbetiae_contig15860.4063.1 ID=prot_L-elsbetiae_contig15860.4063.1|Name=mRNA_L-elsbetiae_contig15860.4063.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=134bp
ANDADCATRYAGNAYTGSDWPGAHGARATDTGHCPACSFPRCYGTARSGS
NGHCPACSPPRCHGTAGSGSNGHCPACSPPLCHGAARIGSNGHCPACDRT
WNGPAGATGAGRNYDFAGGGAGAGDTRDYCAARY
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mRNA from alignment at L-elsbetiae_contig15860:358..2929+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15860.4063.1 ID=mRNA_L-elsbetiae_contig15860.4063.1|Name=mRNA_L-elsbetiae_contig15860.4063.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2572bp|location=Sequence derived from alignment at L-elsbetiae_contig15860:358..2929+ (Laminarionema elsbetiae ELsaHSoW15)
GCCAACGACGCCGACTGCGCAACCCGTTACGCCGGTGCGTGTGTGTGTGT
GTGCTTGTGTTGTGTGTCTTTGTGTGTGCGCCTGTGTGTGCGCGCCTGTG
TGTGTGCGTGGGTGCGTGTGCGTGTGTGTGTGTTATTGCCTGTGTCTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTAGCGCCTTAGCGC
CTTGTATTTTTTGTTTGGCGGTGACTCCTGCTGCTGTGGAATGTGTGCTG
TGCTGTTTTGCGGTGTACCGGACCAGACGGTGCCCTGGCCGGTGGCGCGT
GTTTTTGAAGAGAGGTTTCTCCTTTCGCCCTGCTGCCCTTGCCTCTGTGG
CCCGCTCCTCCGTGTGTTCAGCGCTTAGTGCTTGTCCGCCATGCTTGACT
CGGCCAGACGTGCACTCTGCTTTTCATGTAGCGCACCGGTGTGCTACGCT
GAATGCTGCGTGTGTTTTGCGGGGGCAGGGGAGGGGGATTGACGTCTGTG
TTTTTTTTTTTTTCGTGTTGTATCTTGTTGATGTAAGATCGTTTTTTTGC
AGGAACATCCGTCATCGTTTGTGTTAAAAGCGCGTTTAGCATGACGGTGT
GGCAATTTTAATCGAGCCACCCGTTATTTTTCCGCCGCTGTCGCTTTTGC
CGCTGCCGCCGTTGCTCTCTTTTCGCTCTCAACTTCCAGGGAATGCCTAC
ACAGGGTCCGATTGGCCAGGCGCCCACGGTGCAAGAGGTATGTGGCGTCG
CTATGTTTCCGGTGTAACTAGACTCAAAAGGCTTCAGCAACCACCTGTTG
TGCATGGTTCCGTTGTCGAGTTGCACGAAAAACATGCTGTTAACTCATGG
GAACTGCGAATGGATGTAAATGAACGGAGACACAACAAGAGCGAGCGGCA
CACGCACGGGCCGATTGTTTTGGTGGGAAGTAGTCTTTGGTTTTGATTTT
GTTTTTTTTTTCCGAACGCCGTTCGATCGATCGATCCATCGAGGTCGTAG
ACCCCTAACGCACACACGCCACCCCGTTCCGCTGTTGTTTTCGTTGTTTT
CCCCACACATAAACCCCGCCCACCTGCCCCACCGGCCAAACCCCACCGAT
CGGCCCTTCCTCTTTGCGCCTTCCACGACACCACCAACGTAACGACACCC
CCCCCAATCACACACGTTGCGCTACACCCGACTGCGATCTGCGGGGGCTT
AACGGTGCATCCACATCGAACTTTTTTTTTTTCATCACCGCGCGAAAACG
AACGAACGAACGAAACGTTAGCCACCGACACCGGCCACTGCCCAGCCTGT
AGCTTCCCCCGCTGCTACGGCACAGCCCGTAGTGGGTCCAACGGCCACTG
CCCAGCCTGTAGCCCCCCCCGGTGCCACGGCACAGCCGGTAGTGGGTCCA
ACGGCCACTGCCCAGCCTGTAGCCCCCCCCTCTGCCACGGCGCAGCCCGT
ATTGGGTCCAACGGCCACTGCCCAGCCTGTGATCGCACCTGGAACGGCCC
AGCCGGTGGTAAGTCCACCCACTGCCACCACTCAGCCTGTAGCTCCACCC
ACCGGTACGGCACAACCGGTAGTGGGTCCAACAGCCACTGCCCAGCCTGT
AGCCCCCCCGGCCGCTACTGCACAGCCCATAGTGGGTCCAACGGCCACTG
CCCAGCCTGTAGTGGGTCCAACGGCCACTGCCCAGCCCGTAGTGGGTCCA
ACGGCAACTGCCCAGCCTGTAGCTCCACCCACCGCTACGGCACAGCCGGT
AGTGGGTCCAACGGCCACTGCCCAGCCTGTAGCCCCCCCCCCTGCCACGG
CACAGCCCGTAGTGGGTCCAACGGCCACTGCCCAGCCTGTAGCCCCCCCC
GCTGCAACCACACAGCCCGTAGTAGGTCCATCGGCCACTGCCCAGCCTGT
AGCCCCCCCGGCCGCTACTGCACAGCCCGTAGTGGGTCCAACTGCCACTG
CCCAGCCTGTAGCCCCCCCGGCTGCTACGGCGCAGCCCGTAGTGGGTCCA
ACGGCCACTGCCCAGCCTGTAGCCCCCCCGGCTGCAACCGCCCAGCCTGT
AGTGGGTCCAACGGCCACTGCCCAGCCCGCAGTGGGTCCAACAGCCACTG
CCCAGCCTGTAGTGGGTCCAACGGCCACTGCCCAGCCCGTAGTGGGTCCA
ACAGCCACTGCCCAGCCTGTAGTGGGTCCAACGGCCACTGCCCAGCCTGT
AGCCCCCCCGGCCGCTACTGCACAGCCCGTAGTGGGTCCAACGGCCACTG
TCCAGCCTGTAGCCCCACCCGCCGCTACTGCGCAGCCTGTAGTAGGCCCT
ACAACACCCACCGCTCAACCTGCAGCCCCCCCCGCTACTACGGCGCAGCC
AGTGACCGCGCCGACAACGCCAACCGGAACAACTCCGCCCCCCGCTGTCG
CTCCTTCGGCCGTGCCCCCTTCCCCACCCCCGGCGATACCCACCCCGGTT
CCCGTGGCCGTGCCCCCTGCCCCCCCTACGGAACGGCAGCAACCGGTGCA
GGCAGGAACTACGACTTCGCCGGCGGCGGCGCCGGCGCCGGTGACACCAG
GGACTACTGTGCCGCCCGCTAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15860:358..2929+

>mRNA_L-elsbetiae_contig15860.4063.1 ID=mRNA_L-elsbetiae_contig15860.4063.1|Name=mRNA_L-elsbetiae_contig15860.4063.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=804bp|location=Sequence derived from alignment at L-elsbetiae_contig15860:358..2929+ (Laminarionema elsbetiae ELsaHSoW15)
GCCAACGACGCCGACTGCGCAACCCGTTACGCCGGCCAACGACGCCGACT
GCGCAACCCGTTACGCCGGGAATGCCTACACAGGGTCCGATTGGCCAGGC
GCCCACGGTGCAAGAGGGAATGCCTACACAGGGTCCGATTGGCCAGGCGC
CCACGGTGCAAGAGCCACCGACACCGGCCACTGCCCAGCCTGTAGCTTCC
CCCGCTGCTACGGCACAGCCCGTAGTGGGTCCAACGGCCACTGCCCAGCC
TGTAGCCCCCCCCGGTGCCACGGCACAGCCGGTAGTGGGTCCAACGGCCA
CTGCCCAGCCTGTAGCCCCCCCCTCTGCCACGGCGCAGCCCGTATTGGGT
CCAACGGCCACTGCCCAGCCTGTGATCGCACCTGGAACGGCCCAGCCGGT
GCCACCGACACCGGCCACTGCCCAGCCTGTAGCTTCCCCCGCTGCTACGG
CACAGCCCGTAGTGGGTCCAACGGCCACTGCCCAGCCTGTAGCCCCCCCC
GGTGCCACGGCACAGCCGGTAGTGGGTCCAACGGCCACTGCCCAGCCTGT
AGCCCCCCCCTCTGCCACGGCGCAGCCCGTATTGGGTCCAACGGCCACTG
CCCAGCCTGTGATCGCACCTGGAACGGCCCAGCCGGTGCAACCGGTGCAG
GCAGGAACTACGACTTCGCCGGCGGCGGCGCCGGCGCCGGTGACACCAGG
GACTACTGTGCCGCCCGCTACCAACCGGTGCAGGCAGGAACTACGACTTC
GCCGGCGGCGGCGCCGGCGCCGGTGACACCAGGGACTACTGTGCCGCCCG
CTAC
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