mRNA_L-elsbetiae_contig104.406.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig104.406.1
Unique NamemRNA_L-elsbetiae_contig104.406.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig104.406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig104contigL-elsbetiae_contig104:32498..33620 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size556
Cds size534
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig104.406.1prot_L-elsbetiae_contig104.406.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig104 32519..33620 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815265.3108213-UTR-L-elsbetiae_contig104:32497..325181622815265.3108213-UTR-L-elsbetiae_contig104:32497..32518Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig104 32498..32518 +
1691682805.2309656-UTR-L-elsbetiae_contig104:32497..325181691682805.2309656-UTR-L-elsbetiae_contig104:32497..32518Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig104 32498..32518 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815265.3577662-CDS-L-elsbetiae_contig104:32518..325231622815265.3577662-CDS-L-elsbetiae_contig104:32518..32523Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig104 32519..32523 +
1691682805.242139-CDS-L-elsbetiae_contig104:32518..325231691682805.242139-CDS-L-elsbetiae_contig104:32518..32523Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig104 32519..32523 +
1622815265.3706646-CDS-L-elsbetiae_contig104:32739..329711622815265.3706646-CDS-L-elsbetiae_contig104:32739..32971Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig104 32740..32971 +
1691682805.2501266-CDS-L-elsbetiae_contig104:32739..329711691682805.2501266-CDS-L-elsbetiae_contig104:32739..32971Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig104 32740..32971 +
1622815265.3808815-CDS-L-elsbetiae_contig104:33323..336201622815265.3808815-CDS-L-elsbetiae_contig104:33323..33620Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig104 33324..33620 +
1691682805.2647655-CDS-L-elsbetiae_contig104:33323..336201691682805.2647655-CDS-L-elsbetiae_contig104:33323..33620Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig104 33324..33620 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig104.406.1

>prot_L-elsbetiae_contig104.406.1 ID=prot_L-elsbetiae_contig104.406.1|Name=mRNA_L-elsbetiae_contig104.406.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=178bp
MARMTPPSAAPSLAPSSASSAAPTAALSAGPTMAPTAAVVLANEEFGFLG
PGLMFGSFSADGVSDGVLAWLGEEGVVRQVVCELHPCPGGSESVLVGGGA
ATQPPGSRLLPRAQTQSRSFNKRGWIQHQTAKRGEQPPYSSAMRGGDGAL
LRGQDRTRQSGGKKGISGPAVWRRQNEP
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mRNA from alignment at L-elsbetiae_contig104:32498..33620+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig104.406.1 ID=mRNA_L-elsbetiae_contig104.406.1|Name=mRNA_L-elsbetiae_contig104.406.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1123bp|location=Sequence derived from alignment at L-elsbetiae_contig104:32498..33620+ (Laminarionema elsbetiae ELsaHSoW15)
GCGAGACCTTCCCCAGTTCCCATGGCGTGAGTTGTTTGGGGGAGGGGGCG
TATTGGGGTTGAAAGCTGTTGGCTGCTTCGGTGTGTAGACAGGCTGCCAG
GAGGGTTATTGGTGATTATATTTGTCGTTGCTTGCCGACTTTTTGCGCGG
ACGCTCCCGTCCGCCTGCTTCTGCCGGAGTAAAGGACGCACCCTACCTCA
CTGCGGGGCGTTATTTTTGTCCGTCTTCGATCGTTGTTCCAGGCGGATGA
CTCCTCCGAGCGCGGCTCCAAGTCTAGCTCCAAGCTCAGCTTCAAGCGCG
GCTCCAACCGCCGCTCTGAGTGCCGGCCCGACAATGGCGCCCACGGCCGC
GGTCGTTCTGGCGAACGAAGAATTCGGGTTTCTGGGCCCTGGGCTCATGT
TCGGGTCGTTCTCCGCCGATGGGGTGTCGGACGGTGTGTTGGCTTGGCTC
GGAGAAGAGGGCGTCGTGAGACAGGTGTGCATGTAATATATATGTGCATC
GCACACACCTGGGGTTCTGTTTGAATGCGGGTGCAGCGTAAACCAATGGT
CTGCTTGTTGTTCATCGCTGCAACTTCGCAGCATTGCCCTGTTGTACTTT
ATCCACTTCGAAGCGATCGTCTTGCGTTTAACTATCACGAAACACGGTAT
TGAGCCCGCAAACACAACCAAGCCGGGCAGCATTGGACTACGATGACACA
TAACGTCGTTTGGTGCCAAAAACCTTCTTCTCTCCTTCCCCGTCTTCCTT
CCCTTTCAACATCGCAACGCCAACACCGGACGATCGGTCGGTTGGTCCGG
TCGACACTGGCGACGGCGTCGGCTAGGTGGTATGCGAGCTTCATCCATGC
CCTGGGGGGTCTGAATCGGTTCTCGTGGGTGGTGGGGCTGCGACGCAGCC
CCCCGGCAGCAGATTGCTCCCGAGAGCGCAAACTCAAAGCCGAAGCTTCA
ATAAGCGTGGCTGGATTCAGCACCAGACGGCAAAGCGCGGGGAGCAACCG
CCGTACAGCAGTGCGATGCGTGGCGGGGATGGCGCTTTGTTGCGCGGTCA
GGACCGAACGCGGCAATCGGGGGGCAAGAAGGGTATTTCAGGTCCGGCGG
TGTGGCGACGGCAAAACGAGCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig104:32498..33620+

>mRNA_L-elsbetiae_contig104.406.1 ID=mRNA_L-elsbetiae_contig104.406.1|Name=mRNA_L-elsbetiae_contig104.406.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1068bp|location=Sequence derived from alignment at L-elsbetiae_contig104:32498..33620+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCATGGCGCGGATGACTCCTCCGAGCGCGGCTCCAAGTCTAGCTCCA
AGCTCAGCTTCAAGCGCGGCTCCAACCGCCGCTCTGAGTGCCGGCCCGAC
AATGGCGCCCACGGCCGCGGTCGTTCTGGCGAACGAAGAATTCGGGTTTC
TGGGCCCTGGGCTCATGTTCGGGTCGTTCTCCGCCGATGGGGTGTCGGAC
GGTGTGTTGGCTTGGCTCGGAGAAGAGGGCGTCGTGAGACAGGCGGATGA
CTCCTCCGAGCGCGGCTCCAAGTCTAGCTCCAAGCTCAGCTTCAAGCGCG
GCTCCAACCGCCGCTCTGAGTGCCGGCCCGACAATGGCGCCCACGGCCGC
GGTCGTTCTGGCGAACGAAGAATTCGGGTTTCTGGGCCCTGGGCTCATGT
TCGGGTCGTTCTCCGCCGATGGGGTGTCGGACGGTGTGTTGGCTTGGCTC
GGAGAAGAGGGCGTCGTGAGACAGGTGGTATGCGAGCTTCATCCATGCCC
TGGGGGGTCTGAATCGGTTCTCGTGGGTGGTGGGGCTGCGACGCAGCCCC
CCGGCAGCAGATTGCTCCCGAGAGCGCAAACTCAAAGCCGAAGCTTCAAT
AAGCGTGGCTGGATTCAGCACCAGACGGCAAAGCGCGGGGAGCAACCGCC
GTACAGCAGTGCGATGCGTGGCGGGGATGGCGCTTTGTTGCGCGGTCAGG
ACCGAACGCGGCAATCGGGGGGCAAGAAGGGTATTTCAGGTCCGGCGGTG
TGGCGACGGCAAAACGAGCCGGTGGTATGCGAGCTTCATCCATGCCCTGG
GGGGTCTGAATCGGTTCTCGTGGGTGGTGGGGCTGCGACGCAGCCCCCCG
GCAGCAGATTGCTCCCGAGAGCGCAAACTCAAAGCCGAAGCTTCAATAAG
CGTGGCTGGATTCAGCACCAGACGGCAAAGCGCGGGGAGCAACCGCCGTA
CAGCAGTGCGATGCGTGGCGGGGATGGCGCTTTGTTGCGCGGTCAGGACC
GAACGCGGCAATCGGGGGGCAAGAAGGGTATTTCAGGTCCGGCGGTGTGG
CGACGGCAAAACGAGCCG
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