mRNA_L-elsbetiae_contig15838.4056.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15838.4056.1
Unique NamemRNA_L-elsbetiae_contig15838.4056.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15838.4056.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15838contigL-elsbetiae_contig15838:753..1306 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size556
Cds size372
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815650.7511077-CDS-L-elsbetiae_contig15838:752..11241622815650.7511077-CDS-L-elsbetiae_contig15838:752..1124Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15838 753..1124 +
1691683014.7849443-CDS-L-elsbetiae_contig15838:752..11241691683014.7849443-CDS-L-elsbetiae_contig15838:752..1124Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15838 753..1124 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815650.7640436-UTR-L-elsbetiae_contig15838:1124..13061622815650.7640436-UTR-L-elsbetiae_contig15838:1124..1306Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15838 1125..1306 +
1691683014.8019893-UTR-L-elsbetiae_contig15838:1124..13061691683014.8019893-UTR-L-elsbetiae_contig15838:1124..1306Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15838 1125..1306 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15838.4056.1prot_L-elsbetiae_contig15838.4056.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15838 753..1124 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15838.4056.1

>prot_L-elsbetiae_contig15838.4056.1 ID=prot_L-elsbetiae_contig15838.4056.1|Name=mRNA_L-elsbetiae_contig15838.4056.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=124bp
GEETQAESGSKNVEHQLSLSTYSTVTSLFPTILQRLLTNRRPHKILILGR
WTKSKTSWATLACQKADLNGGSEERTYDNHARIEATNTDTGHRTLRWRGP
YGKGRKSGGVGVCVLAICTRRDR*
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mRNA from alignment at L-elsbetiae_contig15838:753..1306+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15838.4056.1 ID=mRNA_L-elsbetiae_contig15838.4056.1|Name=mRNA_L-elsbetiae_contig15838.4056.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=554bp|location=Sequence derived from alignment at L-elsbetiae_contig15838:753..1306+ (Laminarionema elsbetiae ELsaHSoW15)
GGAGAGGAGACACAAGCCGAATCAGGAAGCAAAAATGTCGAGCATCAGCT
ATCTTTGAGTACGTACAGTACTGTAACAAGTTTATTCCCAACGATACTTC
AAAGGCTACTTACTAACAGACGGCCGCATAAAATCTTGATTCTAGGGCGG
TGGACCAAATCAAAAACAAGTTGGGCGACCTTAGCCTGTCAAAAGGCAGA
CCTGAATGGTGGCAGTGAGGAGAGAACATACGACAACCATGCGCGCATCG
AGGCCACAAACACGGATACAGGCCACAGGACATTGCGCTGGAGAGGGCCC
TATGGCAAGGGTAGAAAGTCTGGCGGGGTCGGCGTTTGTGTGCTTGCGAT
CTGTACAAGACGAGACAGGTGATGTCACGGGGAATACGATCCAAATCGCC
ACCCAAGACCCCACATCTCGGAGCCAACACTTCGGGAAGGCGACAACAAC
AATTAGCATTCCACAGGGCACATGACTGTTGTGCAACCTACATATGGTAG
CGAGTGTGCGTACCCCGCACTCATCCATGGCCCGACCTGACCCCCTTACT
ATCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15838:753..1306+

>mRNA_L-elsbetiae_contig15838.4056.1 ID=mRNA_L-elsbetiae_contig15838.4056.1|Name=mRNA_L-elsbetiae_contig15838.4056.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=744bp|location=Sequence derived from alignment at L-elsbetiae_contig15838:753..1306+ (Laminarionema elsbetiae ELsaHSoW15)
GGAGAGGAGACACAAGCCGAATCAGGAAGCAAAAATGTCGAGCATCAGCT
ATCTTTGAGTACGTACAGTACTGTAACAAGTTTATTCCCAACGATACTTC
AAAGGCTACTTACTAACAGACGGCCGCATAAAATCTTGATTCTAGGGCGG
TGGACCAAATCAAAAACAAGTTGGGCGACCTTAGCCTGTCAAAAGGCAGA
CCTGAATGGTGGCAGTGAGGAGAGAACATACGACAACCATGCGCGCATCG
AGGCCACAAACACGGATACAGGCCACAGGACATTGCGCTGGAGAGGGCCC
TATGGCAAGGGTAGAAAGTCTGGCGGGGTCGGCGTTTGTGTGCTTGCGAT
CTGTACAAGACGAGACAGGTGAGGAGAGGAGACACAAGCCGAATCAGGAA
GCAAAAATGTCGAGCATCAGCTATCTTTGAGTACGTACAGTACTGTAACA
AGTTTATTCCCAACGATACTTCAAAGGCTACTTACTAACAGACGGCCGCA
TAAAATCTTGATTCTAGGGCGGTGGACCAAATCAAAAACAAGTTGGGCGA
CCTTAGCCTGTCAAAAGGCAGACCTGAATGGTGGCAGTGAGGAGAGAACA
TACGACAACCATGCGCGCATCGAGGCCACAAACACGGATACAGGCCACAG
GACATTGCGCTGGAGAGGGCCCTATGGCAAGGGTAGAAAGTCTGGCGGGG
TCGGCGTTTGTGTGCTTGCGATCTGTACAAGACGAGACAGGTGA
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