mRNA_L-elsbetiae_contig15836.4055.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15836.4055.1
Unique NamemRNA_L-elsbetiae_contig15836.4055.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15836.4055.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15836contigL-elsbetiae_contig15836:246..805 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size560
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15836.4055.1prot_L-elsbetiae_contig15836.4055.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15836 300..629 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815650.696162-UTR-L-elsbetiae_contig15836:245..2991622815650.696162-UTR-L-elsbetiae_contig15836:245..299Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15836 246..299 +
1691683014.7579176-UTR-L-elsbetiae_contig15836:245..2991691683014.7579176-UTR-L-elsbetiae_contig15836:245..299Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15836 246..299 +
1622815650.7186007-UTR-L-elsbetiae_contig15836:629..8051622815650.7186007-UTR-L-elsbetiae_contig15836:629..805Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15836 630..805 +
1691683014.775862-UTR-L-elsbetiae_contig15836:629..8051691683014.775862-UTR-L-elsbetiae_contig15836:629..805Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15836 630..805 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815650.7068105-CDS-L-elsbetiae_contig15836:299..6291622815650.7068105-CDS-L-elsbetiae_contig15836:299..629Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15836 300..629 +
1691683014.767321-CDS-L-elsbetiae_contig15836:299..6291691683014.767321-CDS-L-elsbetiae_contig15836:299..629Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15836 300..629 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15836.4055.1

>prot_L-elsbetiae_contig15836.4055.1 ID=prot_L-elsbetiae_contig15836.4055.1|Name=mRNA_L-elsbetiae_contig15836.4055.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=110bp
MEEMMLAFFYLVFTRGGVLGGSGGAWVRRGDCEYVRVCGITYVAHELRTS
LWPRWNSVETRACWLSDRRVFSLFFHYSSTVVVVRVTKTVRENHVHPRAR
GITTYFVHT*
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mRNA from alignment at L-elsbetiae_contig15836:246..805+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15836.4055.1 ID=mRNA_L-elsbetiae_contig15836.4055.1|Name=mRNA_L-elsbetiae_contig15836.4055.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=560bp|location=Sequence derived from alignment at L-elsbetiae_contig15836:246..805+ (Laminarionema elsbetiae ELsaHSoW15)
GATATTTCGCTGCGAGCGAGAGCCCTCGTCGAGCCAGACAACAGACAGGG
CGGGATGGAGGAAATGATGCTTGCTTTTTTTTATCTGGTATTTACTCGAG
GGGGGGTTCTTGGCGGCAGTGGGGGGGCATGGGTTAGGCGAGGCGACTGT
GAATATGTGCGAGTGTGTGGAATTACGTATGTAGCGCACGAATTACGTAC
CTCCCTCTGGCCCCGTTGGAACAGCGTCGAAACACGTGCTTGCTGGTTGT
CGGATCGACGTGTTTTTTCCCTATTTTTTCACTACAGCAGTACTGTGGTT
GTTGTTCGTGTGACGAAAACTGTGCGCGAAAACCATGTACACCCCCGCGC
CCGGGGCATAACAACGTACTTCGTACATACGTAGCGAGTTAGTTGCCCAA
TGACCCCCCCCGTCTTGCGTGTCAATGCGACAGGTAGGGGGGGGAGGGGG
AGGGGCGCCGCCGCCGCTTTACAGCGGGACGCGGCGGCCGCCCCTCGGAT
TCTTAATTTGTTTTTTATCTTATTTTATGGATGTTCAATTTTTTGTGTAC
AACAGGGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15836:246..805+

>mRNA_L-elsbetiae_contig15836.4055.1 ID=mRNA_L-elsbetiae_contig15836.4055.1|Name=mRNA_L-elsbetiae_contig15836.4055.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig15836:246..805+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGAAATGATGCTTGCTTTTTTTTATCTGGTATTTACTCGAGGGGG
GGTTCTTGGCGGCAGTGGGGGGGCATGGGTTAGGCGAGGCGACTGTGAAT
ATGTGCGAGTGTGTGGAATTACGTATGTAGCGCACGAATTACGTACCTCC
CTCTGGCCCCGTTGGAACAGCGTCGAAACACGTGCTTGCTGGTTGTCGGA
TCGACGTGTTTTTTCCCTATTTTTTCACTACAGCAGTACTGTGGTTGTTG
TTCGTGTGACGAAAACTGTGCGCGAAAACCATGTACACCCCCGCGCCCGG
GGCATAACAACGTACTTCGTACATACGTAGATGGAGGAAATGATGCTTGC
TTTTTTTTATCTGGTATTTACTCGAGGGGGGGTTCTTGGCGGCAGTGGGG
GGGCATGGGTTAGGCGAGGCGACTGTGAATATGTGCGAGTGTGTGGAATT
ACGTATGTAGCGCACGAATTACGTACCTCCCTCTGGCCCCGTTGGAACAG
CGTCGAAACACGTGCTTGCTGGTTGTCGGATCGACGTGTTTTTTCCCTAT
TTTTTCACTACAGCAGTACTGTGGTTGTTGTTCGTGTGACGAAAACTGTG
CGCGAAAACCATGTACACCCCCGCGCCCGGGGCATAACAACGTACTTCGT
ACATACGTAG
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