prot_L-elsbetiae_contig15833.4054.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig15833.4054.1
Unique Nameprot_L-elsbetiae_contig15833.4054.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length245
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15833.4054.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 53..84
e-value: 3.1E-4
score: 18.7
coord: 90..121
e-value: 8.7E-4
score: 17.3
coord: 18..50
e-value: 4.0E-8
score: 31.0
coord: 194..226
e-value: 0.0021
score: 16.1
coord: 158..192
e-value: 1.6E-8
score: 32.2
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 73..132
e-value: 7.0E-4
score: 19.6
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 14..61
e-value: 1.4E-10
score: 41.2
coord: 155..202
e-value: 4.1E-10
score: 39.7
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 121..155
score: 9.602
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 156..190
score: 11.783
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 191..225
score: 9.493
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 15..49
score: 11.564
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 86..120
score: 9.251
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 50..84
score: 10.161
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 88..243
e-value: 9.0E-40
score: 138.9
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 3..87
e-value: 9.7E-20
score: 72.6
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 151..236
coord: 11..169

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15833contigL-elsbetiae_contig15833:1476..2210 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15833.4054.1mRNA_L-elsbetiae_contig15833.4054.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig15833 1108..3106 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig15833.4054.1 ID=prot_L-elsbetiae_contig15833.4054.1|Name=mRNA_L-elsbetiae_contig15833.4054.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=245bp
MDALRDKWRRGEAPDVKAYNVCIKACGDAGQWKAALDVFREMKRVGIAAN
VNTYAAAIAACGKGGQGKLAKELLREMETMGSAPVTVRRYNAAIAACGAG
REWRLARELLEELTDKGLAPNLASYHACILACEKGRRPAEAVELLREAEE
RGLAPNYVTYNGCISACRKGGQWEMAVDLLREMGEKGLTPNAASFGAAIE
ACGRGGQAEVAVGLLTKMLRDNLKPSAATFNVVISVLRIGGPVV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf