mRNA_L-elsbetiae_contig10392.405.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10392.405.1
Unique NamemRNA_L-elsbetiae_contig10392.405.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10392.405.1 vs. uniprot
Match: A0A6H5LAN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAN0_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 5.800e-10
Identity = 53/100 (53.00%), Postives = 63/100 (63.00%), Query Frame = -3 
Query:   43 RPSHRR----GSRGSAFATPSSSVGSFVGTPMALA----------GSNSGSGAKQQPGTPLSRPLMQMRSRLMKRWNSTLVG--TPVSSGAWGGDSGPTS 294
            RPS+RR    G RG+A  +P+SSVGSF G    L+              G+G+KQ PGTPLS  LM MRSRL+KRW+STL G  TPVS+G W  DSGP S
Sbjct: 1104 RPSNRRVAVGGLRGAA--SPTSSVGSFGGASRELSVGXXXXXXXXXXXXGTGSKQ-PGTPLSVGLMSMRSRLLKRWSSTLAGAGTPVSAGGWSYDSGPGS 1200
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BLAST of mRNA_L-elsbetiae_contig10392.405.1 vs. uniprot
Match: D8LKD8_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKD8_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 1.180e-7
Identity = 42/71 (59.15%), Postives = 48/71 (67.61%), Query Frame = -3 
Query:    4 GSGAKQQPGTPLSRPLMQMRSRLMKRWNSTLVG--TPVSSGAWGGDSGPTS-------LSPAGPGAADQQQ 189
            G+G+KQ PGTPLS  LM MRSRL+KRW+STL G  TPVS+G W  DSGP S        + AG G ADQ Q
Sbjct: 1031 GTGSKQ-PGTPLSVGLMSMRSRLLKRWSSTLAGAGTPVSAGGWSYDSGPGSPNGGSSVAAAAGTGGADQYQ 1100
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10392.405.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LAN0_9PHAE5.800e-1053.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKD8_ECTSI1.180e-759.15Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10392contigL-elsbetiae_contig10392:4575..5344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size771
Cds size486
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815265.262087-CDS-L-elsbetiae_contig10392:4574..50601622815265.262087-CDS-L-elsbetiae_contig10392:4574..5060Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10392 4575..5060 +
1691682805.2145288-CDS-L-elsbetiae_contig10392:4574..50601691682805.2145288-CDS-L-elsbetiae_contig10392:4574..5060Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10392 4575..5060 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815265.2745135-UTR-L-elsbetiae_contig10392:5060..53441622815265.2745135-UTR-L-elsbetiae_contig10392:5060..5344Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10392 5061..5344 +
1691682805.222755-UTR-L-elsbetiae_contig10392:5060..53441691682805.222755-UTR-L-elsbetiae_contig10392:5060..5344Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10392 5061..5344 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10392.405.1prot_L-elsbetiae_contig10392.405.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10392 4575..5060 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10392.405.1

>prot_L-elsbetiae_contig10392.405.1 ID=prot_L-elsbetiae_contig10392.405.1|Name=mRNA_L-elsbetiae_contig10392.405.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=162bp
LLLLVGSAGPSGRQRRRPRVAAPRPRRHRRPHERRVPALHQPGAHLHQRP
RERRPRLLLRAGAGVGPGQCHRGAHERSDAARRRRESASPRAPPVRRPGA
TVPPVSAATYYKPVLVPVPTAVTAAAGNRGIPRRRRRARATTGGVASVRP
SKVLLLRFRAP*
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mRNA from alignment at L-elsbetiae_contig10392:4575..5344+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10392.405.1 ID=mRNA_L-elsbetiae_contig10392.405.1|Name=mRNA_L-elsbetiae_contig10392.405.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=770bp|location=Sequence derived from alignment at L-elsbetiae_contig10392:4575..5344+ (Laminarionema elsbetiae ELsaHSoW15)
CTGCTGCTGCTGGTCGGCAGCGCCGGGCCCAGCGGGAGACAACGACGTCG
GCCCCGAGTCGCCGCCCCACGCCCCCGACGACACCGGCGTCCCCACGAGC
GTCGAGTTCCAGCGCTTCATCAGCCGGGAGCGCATCTGCATCAGCGGCCT
CGAGAGCGGCGTCCCCGGTTGCTGCTTCGCGCCGGAGCCGGAGTTGGACC
CGGCCAATGCCATCGGGGTGCCCACGAACGATCCGACGCTGCTCGACGGC
GTCGCGAAAGCGCTTCCCCTCGAGCCCCGCCGGTGAGACGGCCGGGAGCA
ACTGTCCCCCCCGTCTCCGCCGCCACCTACTACAAACCCGTCCTCGTCCC
CGTCCCCACCGCCGTCACCGCCGCCGCCGGAAACCGCGGAATCCCGCGCC
GCCGCCGCCGAGCTCGAGCCACTACCGGCGGCGTTGCCTCTGTCCGCCCT
AGTAAAGTGCTGCTGCTCCGCTTTCGAGCGCCCTGAGCCCTCCACGATGC
TTGCCGCTTCGTCCCCGGCCGCCGCCGCGGCGGCAAGCGCGCCTTCCTTG
CGGGCGACGACGGCGGCGGCTACCGCCGCCAAGCCCCGGGAAGGCTCGGC
GGGAGCTGCCCCGGCGGCGGTTGGGCTGTCGCTACCAACTGTGCCCCCGA
AGGCCGCGTCGCCCCCGGCCTCCGCGTTCGCCGCGTCACCCCCGGCCTCC
GCGTTCGCCGCGTCGGTGTCCACCCGGAGCCGGGACGCAGGCCGGTGCAA
GCTTCCCCCTCCAGGCGCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10392:4575..5344+

>mRNA_L-elsbetiae_contig10392.405.1 ID=mRNA_L-elsbetiae_contig10392.405.1|Name=mRNA_L-elsbetiae_contig10392.405.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=972bp|location=Sequence derived from alignment at L-elsbetiae_contig10392:4575..5344+ (Laminarionema elsbetiae ELsaHSoW15)
CTGCTGCTGCTGGTCGGCAGCGCCGGGCCCAGCGGGAGACAACGACGTCG
GCCCCGAGTCGCCGCCCCACGCCCCCGACGACACCGGCGTCCCCACGAGC
GTCGAGTTCCAGCGCTTCATCAGCCGGGAGCGCATCTGCATCAGCGGCCT
CGAGAGCGGCGTCCCCGGTTGCTGCTTCGCGCCGGAGCCGGAGTTGGACC
CGGCCAATGCCATCGGGGTGCCCACGAACGATCCGACGCTGCTCGACGGC
GTCGCGAAAGCGCTTCCCCTCGAGCCCCGCCGGTGAGACGGCCGGGAGCA
ACTGTCCCCCCCGTCTCCGCCGCCACCTACTACAAACCCGTCCTCGTCCC
CGTCCCCACCGCCGTCACCGCCGCCGCCGGAAACCGCGGAATCCCGCGCC
GCCGCCGCCGAGCTCGAGCCACTACCGGCGGCGTTGCCTCTGTCCGCCCT
AGTAAAGTGCTGCTGCTCCGCTTTCGAGCGCCCTGACTGCTGCTGCTGGT
CGGCAGCGCCGGGCCCAGCGGGAGACAACGACGTCGGCCCCGAGTCGCCG
CCCCACGCCCCCGACGACACCGGCGTCCCCACGAGCGTCGAGTTCCAGCG
CTTCATCAGCCGGGAGCGCATCTGCATCAGCGGCCTCGAGAGCGGCGTCC
CCGGTTGCTGCTTCGCGCCGGAGCCGGAGTTGGACCCGGCCAATGCCATC
GGGGTGCCCACGAACGATCCGACGCTGCTCGACGGCGTCGCGAAAGCGCT
TCCCCTCGAGCCCCGCCGGTGAGACGGCCGGGAGCAACTGTCCCCCCCGT
CTCCGCCGCCACCTACTACAAACCCGTCCTCGTCCCCGTCCCCACCGCCG
TCACCGCCGCCGCCGGAAACCGCGGAATCCCGCGCCGCCGCCGCCGAGCT
CGAGCCACTACCGGCGGCGTTGCCTCTGTCCGCCCTAGTAAAGTGCTGCT
GCTCCGCTTTCGAGCGCCCTGA
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